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2025-04-15 14:18:04, GGRNA.v2 : RefSeq release 229 (Mar, 2025)

LOCUS       NM_001180701            1371 bp    mRNA    linear   PLN 17-DEC-2024
DEFINITION  Saccharomyces cerevisiae S288C She9p (SHE9), partial mRNA.
ACCESSION   NM_001180701
VERSION     NM_001180701.1
DBLINK      BioProject: PRJNA128
KEYWORDS    RefSeq.
SOURCE      Saccharomyces cerevisiae S288C
  ORGANISM  Saccharomyces cerevisiae S288C
            Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina;
            Saccharomycetes; Saccharomycetales; Saccharomycetaceae;
            Saccharomyces.
REFERENCE   1  (bases 1 to 1371)
  AUTHORS   Engel,S.R., Wong,E.D., Nash,R.S., Aleksander,S., Alexander,M.,
            Douglass,E., Karra,K., Miyasato,S.R., Simison,M., Skrzypek,M.S.,
            Weng,S. and Cherry,J.M.
  TITLE     New data and collaborations at the Saccharomyces Genome Database:
            updated reference genome, alleles, and the Alliance of Genome
            Resources
  JOURNAL   Genetics 220 (4) (2022)
   PUBMED   34897464
REFERENCE   2  (bases 1 to 1371)
  AUTHORS   Jacq,C., Alt-Morbe,J., Andre,B., Arnold,W., Bahr,A., Ballesta,J.P.,
            Bargues,M., Baron,L., Becker,A., Biteau,N., Blocker,H., Blugeon,C.,
            Boskovic,J., Brandt,P., Bruckner,M., Buitrago,M.J., Coster,F.,
            Delaveau,T., del Rey,F., Dujon,B., Eide,L.G.,
            Garcia-Cantalejo,J.M., Goffeau,A., Gomez-Peris,A., Zaccaria,P. et
            al.
  TITLE     The nucleotide sequence of Saccharomyces cerevisiae chromosome IV
  JOURNAL   Nature 387 (6632 SUPPL), 75-78 (1997)
   PUBMED   9169867
REFERENCE   3  (bases 1 to 1371)
  AUTHORS   Goffeau,A., Barrell,B.G., Bussey,H., Davis,R.W., Dujon,B.,
            Feldmann,H., Galibert,F., Hoheisel,J.D., Jacq,C., Johnston,M.,
            Louis,E.J., Mewes,H.W., Murakami,Y., Philippsen,P., Tettelin,H. and
            Oliver,S.G.
  TITLE     Life with 6000 genes
  JOURNAL   Science 274 (5287), 546 (1996)
   PUBMED   8849441
REFERENCE   4  (bases 1 to 1371)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (17-DEC-2024) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   5  (bases 1 to 1371)
  CONSRTM   Saccharomyces Genome Database
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JAN-2015) Department of Genetics, Stanford
            University, Stanford, CA 94305-5120, USA
  REMARK    Protein update by submitter
REFERENCE   6  (bases 1 to 1371)
  CONSRTM   Saccharomyces Genome Database
  TITLE     Direct Submission
  JOURNAL   Submitted (06-FEB-2013) Department of Genetics, Stanford
            University, Stanford, CA 94305-5120, USA
  REMARK    Protein update by submitter
REFERENCE   7  (bases 1 to 1371)
  CONSRTM   Saccharomyces Genome Database
  TITLE     Direct Submission
  JOURNAL   Submitted (04-MAY-2012) Department of Genetics, Stanford
            University, Stanford, CA 94305-5120, USA
  REMARK    Protein update by submitter
REFERENCE   8  (bases 1 to 1371)
  CONSRTM   Saccharomyces Genome Database
  TITLE     Direct Submission
  JOURNAL   Submitted (31-MAR-2011) Department of Genetics, Stanford
            University, Stanford, CA 94305-5120, USA
  REMARK    Sequence update by submitter
REFERENCE   9  (bases 1 to 1371)
  CONSRTM   Saccharomyces Genome Database
  TITLE     Direct Submission
  JOURNAL   Submitted (11-DEC-2009) Department of Genetics, Stanford
            University, Stanford, CA 94305-5120, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by SGD. This record
            is derived from an annotated genomic sequence (NC_001136).
            
            ##Genome-Annotation-Data-START##
            Annotation Provider :: SGD
            Annotation Status   :: Full Annotation
            Annotation Version  :: R64-4-1
            URL                 :: http://www.yeastgenome.org/
            ##Genome-Annotation-Data-END##
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..1371
                     /organism="Saccharomyces cerevisiae S288C"
                     /mol_type="mRNA"
                     /strain="S288C"
                     /db_xref="taxon:559292"
                     /chromosome="IV"
     gene            <1..>1371
                     /gene="SHE9"
                     /locus_tag="YDR393W"
                     /gene_synonym="MDM33"
                     /db_xref="GeneID:852002"
     CDS             1..1371
                     /gene="SHE9"
                     /locus_tag="YDR393W"
                     /gene_synonym="MDM33"
                     /experiment="EXISTENCE:direct assay:GO:0005739
                     mitochondrion [PMID:24769239]"
                     /experiment="EXISTENCE:direct assay:GO:0005743
                     mitochondrial inner membrane [PMID:12591915]"
                     /experiment="EXISTENCE:mutant phenotype:GO:0007005
                     mitochondrion organization [PMID:11907266]"
                     /experiment="EXISTENCE:mutant phenotype:GO:0007007 inner
                     mitochondrial membrane organization [PMID:12591915]"
                     /note="Protein required for normal mitochondrial
                     morphology; localized to mitochondrial inner membrane; may
                     be involved in fission of the inner membrane; forms a
                     homo-oligomeric complex"
                     /codon_start=1
                     /product="She9p"
                     /protein_id="NP_010681.1"
                     /db_xref="GeneID:852002"
                     /db_xref="SGD:S000002801"
                     /translation="
MLRYYGATRNLPLVFSINKLMLRASSFTRPFHYSSYSLQNGDTPDKGSTNKNEIRTPNNAVWKENIELQWQHLKKKLNELYSRFNFHRDQLSFQVNKAKKSIQEANRKLSEQENEINDSRLNYNKDELTSAKIEGLPSEREQHRKKWSRKLEFYFDSLQETLFTATRALNDVTGYSGIQKLKSSISLMEKKLEATKKEHKLFKAQYANAIDERAQSQREVNELLQRQSAWSSSDLERFTQLYKNDALNARQEQELKNKVKEIESKEEQLNDDLYRAILTRYHEEQIWSDKIRRTSTWGTFILMGMNIFLFIVLQLLLEPWKRKRLVGSFEDKVKSALNEYAKEQNMKMDKLLPGKSSEVTDQGNTENSIVEEHIEQRGECKINTAEIDRPEVATAETTTTEMKSFRDIWERIKALFVTLKSIQYRKLDAPLVFDTLEFYLYSISLVSMTILVSGLI"
     misc_feature    439..1032
                     /gene="SHE9"
                     /locus_tag="YDR393W"
                     /gene_synonym="MDM33"
                     /note="She9 / Mdm33 family; Region: She9_MDM33; pfam05546"
                     /db_xref="CDD:428516"
ORIGIN      
atgttgagatactatggggcgacaagaaacttacccttagtattcagcattaacaaattaatgttgagggcgtcatctttcaccaggccatttcattatagttcatattctctacagaacggtgatactcctgataaaggcagcactaataaaaatgaaatacggacacctaataacgctgtttggaaagaaaatatagaacttcaatggcagcacttgaaaaagaaattaaatgaattgtattctaggtttaacttccaccgagatcaattatcctttcaagttaacaaggccaaaaaatcaattcaagaggcaaacaggaagttgtctgagcaagagaatgaaatcaacgattcccgtttaaactataataaagatgaattgaccagtgcgaaaattgaaggattgccctccgaaagggaacaacatagaaaaaaatggtctagaaagttagagttttattttgactcattacaggagacgttatttactgccacacgtgctttaaatgatgtgaccggttattctggaattcaaaagctcaaatctagcatcagtctaatggaaaaaaaattagaagctacaaagaaagaacacaaactgtttaaggcacagtacgctaacgccattgatgaacgtgctcaatcccaaagagaagttaacgaattattgcaaaggcaaagcgcgtggtcttcgagcgatttagagagatttacgcagctatacaaaaatgacgccttgaatgctagacaggagcaagaactaaaaaacaaggttaaagaaattgaaagcaaagaagaacaactaaatgacgacttgtatagagcaattttgaccaggtaccatgaggaacaaatatggtcagacaaaatccgaagaacatccacctggggtacattcatcttaatgggtatgaatatattcttgtttattgtcctacaattactattagaaccttggaaacggaaaaggttagtaggatcgtttgaagacaaagtcaaaagcgctctcaacgaatatgccaaggagcagaatatgaagatggataaattgttacctggaaaatcatcggaagtaacagaccaaggcaacacagaaaactcgatcgttgaagagcacatagaacagagaggtgaatgtaaaattaatacggcggaaatcgacaggcctgaagttgcaacggctgagaccactacaacagaaatgaaatccttcagagatatttgggaacgaataaaggcactttttgtcacactaaaaagcatacaatataggaaacttgacgctcccctagtctttgacaccttagagttctacttatactcaatttctttagtgagtatgacaatcttggtatccgggctgatatga
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]