LOCUS       NM_001180543            1635 bp    mRNA    linear   PLN 17-DEC-2024
DEFINITION  Saccharomyces cerevisiae S288C mRNA splicing protein PRP42 (PRP42),
            partial mRNA.
ACCESSION   NM_001180543
VERSION     NM_001180543.1
DBLINK      BioProject: PRJNA128
KEYWORDS    RefSeq.
SOURCE      Saccharomyces cerevisiae S288C
  ORGANISM  Saccharomyces cerevisiae S288C
            Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina;
            Saccharomycetes; Saccharomycetales; Saccharomycetaceae;
            Saccharomyces.
REFERENCE   1  (bases 1 to 1635)
  AUTHORS   Engel,S.R., Wong,E.D., Nash,R.S., Aleksander,S., Alexander,M.,
            Douglass,E., Karra,K., Miyasato,S.R., Simison,M., Skrzypek,M.S.,
            Weng,S. and Cherry,J.M.
  TITLE     New data and collaborations at the Saccharomyces Genome Database:
            updated reference genome, alleles, and the Alliance of Genome
            Resources
  JOURNAL   Genetics 220 (4) (2022)
   PUBMED   34897464
REFERENCE   2  (bases 1 to 1635)
  AUTHORS   Jacq,C., Alt-Morbe,J., Andre,B., Arnold,W., Bahr,A., Ballesta,J.P.,
            Bargues,M., Baron,L., Becker,A., Biteau,N., Blocker,H., Blugeon,C.,
            Boskovic,J., Brandt,P., Bruckner,M., Buitrago,M.J., Coster,F.,
            Delaveau,T., del Rey,F., Dujon,B., Eide,L.G.,
            Garcia-Cantalejo,J.M., Goffeau,A., Gomez-Peris,A., Zaccaria,P. et
            al.
  TITLE     The nucleotide sequence of Saccharomyces cerevisiae chromosome IV
  JOURNAL   Nature 387 (6632 SUPPL), 75-78 (1997)
   PUBMED   9169867
REFERENCE   3  (bases 1 to 1635)
  AUTHORS   Goffeau,A., Barrell,B.G., Bussey,H., Davis,R.W., Dujon,B.,
            Feldmann,H., Galibert,F., Hoheisel,J.D., Jacq,C., Johnston,M.,
            Louis,E.J., Mewes,H.W., Murakami,Y., Philippsen,P., Tettelin,H. and
            Oliver,S.G.
  TITLE     Life with 6000 genes
  JOURNAL   Science 274 (5287), 546 (1996)
   PUBMED   8849441
REFERENCE   4  (bases 1 to 1635)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (17-DEC-2024) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   5  (bases 1 to 1635)
  CONSRTM   Saccharomyces Genome Database
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JAN-2015) Department of Genetics, Stanford
            University, Stanford, CA 94305-5120, USA
  REMARK    Protein update by submitter
REFERENCE   6  (bases 1 to 1635)
  CONSRTM   Saccharomyces Genome Database
  TITLE     Direct Submission
  JOURNAL   Submitted (06-FEB-2013) Department of Genetics, Stanford
            University, Stanford, CA 94305-5120, USA
  REMARK    Protein update by submitter
REFERENCE   7  (bases 1 to 1635)
  CONSRTM   Saccharomyces Genome Database
  TITLE     Direct Submission
  JOURNAL   Submitted (04-MAY-2012) Department of Genetics, Stanford
            University, Stanford, CA 94305-5120, USA
  REMARK    Protein update by submitter
REFERENCE   8  (bases 1 to 1635)
  CONSRTM   Saccharomyces Genome Database
  TITLE     Direct Submission
  JOURNAL   Submitted (31-MAR-2011) Department of Genetics, Stanford
            University, Stanford, CA 94305-5120, USA
  REMARK    Sequence update by submitter
REFERENCE   9  (bases 1 to 1635)
  CONSRTM   Saccharomyces Genome Database
  TITLE     Direct Submission
  JOURNAL   Submitted (11-DEC-2009) Department of Genetics, Stanford
            University, Stanford, CA 94305-5120, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by SGD. This record
            is derived from an annotated genomic sequence (NC_001136).
            
            ##Genome-Annotation-Data-START##
            Annotation Provider :: SGD
            Annotation Status   :: Full Annotation
            Annotation Version  :: R64-4-1
            URL                 :: http://www.yeastgenome.org/
            ##Genome-Annotation-Data-END##
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..1635
                     /organism="Saccharomyces cerevisiae S288C"
                     /mol_type="mRNA"
                     /strain="S288C"
                     /db_xref="taxon:559292"
                     /chromosome="IV"
     gene            <1..>1635
                     /gene="PRP42"
                     /locus_tag="YDR235W"
                     /gene_synonym="MUD16; SNU65"
                     /db_xref="GeneID:851821"
     CDS             1..1635
                     /gene="PRP42"
                     /locus_tag="YDR235W"
                     /gene_synonym="MUD16; SNU65"
                     /experiment="EXISTENCE:direct assay:GO:0003723 RNA binding
                     [PMID:9418882]"
                     /experiment="EXISTENCE:direct assay:GO:0005685 U1 snRNP
                     [PMID:9630245]"
                     /experiment="EXISTENCE:direct assay:GO:0071004 U2-type
                     prespliceosome [PMID:16618970]"
                     /experiment="EXISTENCE:mutant phenotype:GO:0000398 mRNA
                     splicing, via spliceosome [PMID:9418882]"
                     /note="U1 snRNP protein involved in splicing; required for
                     U1 snRNP biogenesis; contains multiple tetriatricopeptide
                     repeats"
                     /codon_start=1
                     /product="mRNA splicing protein PRP42"
                     /protein_id="NP_010521.1"
                     /db_xref="GeneID:851821"
                     /db_xref="SGD:S000002643"
                     /translation="

MDKYTALIHDENFSTLTLNVSRYPKSLAYWEKLLNYIVKASAPICKSTEPQLLKLIRCTYSSMLNEFPYLENYYIDFALLEYKLGNVSMSHKIFQRGLQAFNQRSLLLWTSYLKFCNNVISHQKQLFKKYETAEEYVGLHFFSGEFWDLYLEQISSRCTSSKKYWNVLRKILEIPLHSFSKFYALWLQRIDDIMDLKQLSQLTSKDELLKKLKIDINYSGRKGPYLQDAKKKLKKITKEMYMVVQYQVLEIYSIFESKIYINYYTSPETLVSSDEIETWIKYLDYTITLQTDSLTHLNFQRALLPLAHYDLVWIKYSKWLINSKNDLLGAKNVLLMGLKFSLKKTEIIKLLYSVICKLNEYVLLRNLLEKIESSYSDNVENVDDFEIFWDYLQFKTFCQNSLYSSRYSDSQSNGLLNKELFDKVWKRLSCKEKKSGQEILLNNLVQFYSKDTVEFVEKNIFQKIIEFGWEYYLQNGMFWNCYCRLIYFDTSRSYLDKRQYIVRKIWPQIDKKFAQSVLPSLTEFCESYFPEEMDTLEEMFTEEP"

     misc_feature    166..>549
                     /gene="PRP42"
                     /locus_tag="YDR235W"
                     /gene_synonym="MUD16; SNU65"
                     /note="Pre-mRNA 3'-end processing (cleavage and
                     polyadenylation) factor [RNA processing and modification];
                     Region: RNA14; COG5107"
                     /db_xref="CDD:227438"
ORIGIN      

atggataaatatactgctttgattcacgatgagaatttttcaactcttacattgaatgtctcgagataccctaaaagtttggcatattgggagaagttactgaactatatagtaaaggcttcggcaccaatatgcaagtccactgagcctcaattattaaagttaatacgatgtacttattcttctatgctgaatgagtttccctatctagaaaactactatatcgacttcgcgctactggaatacaaactagggaatgtttctatgtctcataagatatttcagcgcggattgcaagcctttaaccaaagatctttactattatggacttcatatttaaagttttgtaataacgttatctcacaccagaagcagttgtttaaaaaatatgaaacagctgaagaatatgttggtttgcattttttcagtggggaattctgggatttatacctggaacaaattagctcaagatgtacgtcttctaagaaatattggaacgttttgaggaagatactcgaaattcctttacactctttttcgaaattttatgcattatggttacagcgcatagacgatataatggacctaaagcaattatcacaactaacaagtaaagatgaattattgaagaaactcaagatagacatcaattacagtggaagaaagggaccgtacctgcaggatgcaaagaaaaagttgaagaaaataacgaaggaaatgtacatggttgtacaatatcaagtacttgaaatctattccatttttgaatcaaaaatttatatcaactattatacatcgccagaaaccttggtttcttcagatgaaatagaaacatggataaaatacttggattataccatcaccttacaaacagattctttaacacatttaaattttcaaagagctttacttcctctggcccattatgatcttgtatggataaaatacagtaaatggttgataaattcaaaaaatgaccttttgggggcaaaaaacgttctattaatgggtcttaaattttctttgaagaagaccgaaataataaaactactgtattcagttatttgcaagttaaatgagtacgtacttttgcgaaatctattggaaaaaattgagtcctcatattccgacaatgttgaaaacgttgatgattttgagatattttgggactatcttcagttcaaaacgttctgccagaattctctgtattccagtcgatattctgattcacaatcaaacgggcttttgaataaggagctgtttgataaagtatggaaacgtttgagttgtaaagaaaaaaaaagtggtcaagaaattttattgaataacttagtacagttttattcgaaggataccgtagaatttgtagaaaagaacatatttcaaaagataatagaatttggttgggagtactacctacagaacggtatgttctggaactgttattgccgtttaatttatttcgacacttctaggtcatatttggacaagaggcaatatattgtcagaaaaatatggccccaaatagacaaaaaatttgcacagagcgtcttgccgtctttaacagaattctgtgagtcatacttcccagaggagatggatacattagaggaaatgtttactgaagaaccttag

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