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2025-04-15 14:20:31, GGRNA.v2 : RefSeq release 229 (Mar, 2025)

LOCUS       NM_001179648            1305 bp    mRNA    linear   PLN 17-DEC-2024
DEFINITION  Saccharomyces cerevisiae S288C ribosome biosynthesis protein RRP14
            (RRP14), partial mRNA.
ACCESSION   NM_001179648
VERSION     NM_001179648.1
DBLINK      BioProject: PRJNA128
KEYWORDS    RefSeq.
SOURCE      Saccharomyces cerevisiae S288C
  ORGANISM  Saccharomyces cerevisiae S288C
            Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina;
            Saccharomycetes; Saccharomycetales; Saccharomycetaceae;
            Saccharomyces.
REFERENCE   1  (bases 1 to 1305)
  AUTHORS   Engel,S.R., Wong,E.D., Nash,R.S., Aleksander,S., Alexander,M.,
            Douglass,E., Karra,K., Miyasato,S.R., Simison,M., Skrzypek,M.S.,
            Weng,S. and Cherry,J.M.
  TITLE     New data and collaborations at the Saccharomyces Genome Database:
            updated reference genome, alleles, and the Alliance of Genome
            Resources
  JOURNAL   Genetics 220 (4) (2022)
   PUBMED   34897464
REFERENCE   2  (bases 1 to 1305)
  AUTHORS   Goffeau,A., Barrell,B.G., Bussey,H., Davis,R.W., Dujon,B.,
            Feldmann,H., Galibert,F., Hoheisel,J.D., Jacq,C., Johnston,M.,
            Louis,E.J., Mewes,H.W., Murakami,Y., Philippsen,P., Tettelin,H. and
            Oliver,S.G.
  TITLE     Life with 6000 genes
  JOURNAL   Science 274 (5287), 546 (1996)
   PUBMED   8849441
REFERENCE   3  (bases 1 to 1305)
  AUTHORS   Dujon,B., Alexandraki,D., Andre,B., Ansorge,W., Baladron,V.,
            Ballesta,J.P., Banrevi,A., Bolle,P.A., Bolotin-Fukuhara,M.,
            Bossier,P. et al.
  TITLE     Complete DNA sequence of yeast chromosome XI
  JOURNAL   Nature 369 (6479), 371-378 (1994)
   PUBMED   8196765
REFERENCE   4  (bases 1 to 1305)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (17-DEC-2024) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   5  (bases 1 to 1305)
  CONSRTM   Saccharomyces Genome Database
  TITLE     Direct Submission
  JOURNAL   Submitted (04-MAY-2012) Department of Genetics, Stanford
            University, Stanford, CA 94305-5120, USA
  REMARK    Protein update by submitter
REFERENCE   6  (bases 1 to 1305)
  CONSRTM   Saccharomyces Genome Database
  TITLE     Direct Submission
  JOURNAL   Submitted (31-MAR-2011) Department of Genetics, Stanford
            University, Stanford, CA 94305-5120, USA
  REMARK    Sequence update by submitter
REFERENCE   7  (bases 1 to 1305)
  CONSRTM   Saccharomyces Genome Database
  TITLE     Direct Submission
  JOURNAL   Submitted (14-DEC-2009) Department of Genetics, Stanford
            University, Stanford, CA 94305-5120, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by SGD. This record
            is derived from an annotated genomic sequence (NC_001143).
            
            ##Genome-Annotation-Data-START##
            Annotation Provider :: SGD
            Annotation Status   :: Full Annotation
            Annotation Version  :: R64-4-1
            URL                 :: http://www.yeastgenome.org/
            ##Genome-Annotation-Data-END##
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..1305
                     /organism="Saccharomyces cerevisiae S288C"
                     /mol_type="mRNA"
                     /strain="S288C"
                     /db_xref="taxon:559292"
                     /chromosome="XI"
     gene            <1..>1305
                     /gene="RRP14"
                     /locus_tag="YKL082C"
                     /db_xref="GeneID:853780"
     CDS             1..1305
                     /gene="RRP14"
                     /locus_tag="YKL082C"
                     /experiment="EXISTENCE:direct assay:GO:0005730 nucleolus
                     [PMID:17804645|PMID:11489916]"
                     /experiment="EXISTENCE:mutant phenotype:GO:0042273
                     ribosomal large subunit biogenesis
                     [PMID:17804645|PMID:17272295]"
                     /experiment="EXISTENCE:mutant phenotype:GO:0042274
                     ribosomal small subunit biogenesis [PMID:17272295]"
                     /note="Essential protein, constituent of 66S pre-ribosomal
                     particles; interacts with proteins involved in ribosomal
                     biogenesis and cell polarity; member of the SURF-6 family"
                     /codon_start=1
                     /product="ribosome biosynthesis protein RRP14"
                     /protein_id="NP_012841.1"
                     /db_xref="GeneID:853780"
                     /db_xref="SGD:S000001565"
                     /translation="
MSNSLEERLRANSSAFDGLLALIPAKYYYDEKSQEQWKAKKKTKEQSKNDKLKKLDPEQRDDETSSTLEVMKKKEKDAKPVVLPGEKFKHMKMQKQKEATSKVEGDSDLNVEVNDPMIIAPDEDEEEEEDIKVIFDDEGNEIPLESKKDTTEPDRSVEKKSITEEEKLQRKKNLEALRSKLQAKISDMKSKRKAPGSREAILAQRKRKEELKKRKRLESEQEQDQDEIASDSDMEDIDSDLENNSKKRFKKGKKDSEINADGVMFQNIIFDDGARATSDLQRLRKAGRTKGPAKNDVKSHLKLLEAKKNKMEAKDELEQIKQKEKEKWQKAMLQAEGIKIRDDEKLLRKAIKRKEAQKRKSAIEWSERKRVVEDTISERQKRREENLRIRKDNKGKKRNKQEKMKRKYVGSAVPKKRAGFEGRLKTGKKKGGPK"
     misc_feature    22..174
                     /gene="RRP14"
                     /locus_tag="YKL082C"
                     /note="60S ribosome biogenesis protein Rrp14; Region:
                     RRP14; pfam15459"
                     /db_xref="CDD:464729"
     misc_feature    661..1200
                     /gene="RRP14"
                     /locus_tag="YKL082C"
                     /note="Surfeit locus protein 6; Region: SURF6; pfam04935"
                     /db_xref="CDD:461491"
ORIGIN      
atgagtaattcacttgaggagcgccttcgtgctaattcaagcgccttcgatggtttattggctttaattcctgcaaaatactattatgatgaaaaaagtcaagagcaatggaaggccaagaagaaaaccaaagaacagagtaaaaatgataaactgaaaaaattagacccggagcaacgtgatgatgaaacatctagtacattagaagtaatgaagaagaaggagaaagacgcaaagccggtggtcctacctggtgaaaaattcaagcacatgaaaatgcaaaagcaaaaggaagcaacatcaaaagtggaaggagactccgacctgaacgtagaagtaaacgatcctatgataatagcaccagacgaagatgaagaagaggaagaggatattaaggtgatctttgatgatgagggaaatgaaataccattagaatctaaaaaagatactacagagcccgatagatctgtcgaaaagaagtctattacagaggaagagaaactacaaagaaagaaaaacttggaagcactacgttccaagttacaagcgaaaatttcagatatgaagagtaaaaggaaagcacccggttctagagaggctattcttgctcaaaggaaacgcaaggaagagttgaaaaaaagaaagcgtctagaaagtgaacaggaacaggatcaggatgaaattgcgtctgattccgatatggaagacatcgatagtgatttagaaaacaattcgaaaaaaagattcaaaaaaggcaagaaggactcagaaattaacgcagatggtgtaatgtttcaaaatatcatattcgatgatggtgcaagggccacttcagatttacaaaggttaagaaaagctggtagaacgaagggtccggctaagaatgatgtaaaatcacacttaaagttattagaagccaagaagaataagatggaggcgaaagacgaactagaacaaatcaagcagaaggaaaaggaaaaatggcaaaaggctatgttacaagcagaaggaattaagattagggatgacgaaaaactacttcgcaaagctataaagagaaaggaagcacaaaagagaaagtctgcgattgaatggagcgaacgtaagagggttgtggaagacacgatatctgaaagacaaaagagaagagaagagaatctgaggattaggaaagacaacaagggtaaaaagagaaataagcaagaaaagatgaaaagaaagtatgtcggtagtgccgtaccaaagaaaagagccggatttgagggtagattaaaaacaggtaaaaagaagggaggacctaaataa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]