2024-11-01 08:13:18, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS NM_001395151 2894 bp mRNA linear ROD 28-MAR-2024 DEFINITION Rattus norvegicus protection of telomeres 1 (Pot1), mRNA. ACCESSION NM_001395151 XM_006236161 VERSION NM_001395151.1 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE 1 (bases 1 to 2894) AUTHORS Yin,H., Hardikar,S., Lindstroem,S., Hsu,L., Anderson,K.E., Banbury,B.L., Berndt,S.I., Chan,A.T., Giovanucci,E.L., Harrison,T.A., Joshi,A.D., Nan,H., Potter,J.D., Sakoda,L.C., Slattery,M.L., Schoen,R.E., White,E., Peters,U. and Newcomb,P.A. TITLE Telomere Maintenance Variants and Survival after Colorectal Cancer: Smoking- and Sex-Specific Associations JOURNAL Cancer Epidemiol Biomarkers Prev 29 (9), 1817-1824 (2020) PUBMED 32586834 REFERENCE 2 (bases 1 to 2894) AUTHORS Ishigaki,K., Akiyama,M., Kanai,M., Takahashi,A., Kawakami,E., Sugishita,H., Sakaue,S., Matoba,N., Low,S.K., Okada,Y., Terao,C., Amariuta,T., Gazal,S., Kochi,Y., Horikoshi,M., Suzuki,K., Ito,K., Koyama,S., Ozaki,K., Niida,S., Sakata,Y., Sakata,Y., Kohno,T., Shiraishi,K., Momozawa,Y., Hirata,M., Matsuda,K., Ikeda,M., Iwata,N., Ikegawa,S., Kou,I., Tanaka,T., Nakagawa,H., Suzuki,A., Hirota,T., Tamari,M., Chayama,K., Miki,D., Mori,M., Nagayama,S., Daigo,Y., Miki,Y., Katagiri,T., Ogawa,O., Obara,W., Ito,H., Yoshida,T., Imoto,I., Takahashi,T., Tanikawa,C., Suzuki,T., Sinozaki,N., Minami,S., Yamaguchi,H., Asai,S., Takahashi,Y., Yamaji,K., Takahashi,K., Fujioka,T., Takata,R., Yanai,H., Masumoto,A., Koretsune,Y., Kutsumi,H., Higashiyama,M., Murayama,S., Minegishi,N., Suzuki,K., Tanno,K., Shimizu,A., Yamaji,T., Iwasaki,M., Sawada,N., Uemura,H., Tanaka,K., Naito,M., Sasaki,M., Wakai,K., Tsugane,S., Yamamoto,M., Yamamoto,K., Murakami,Y., Nakamura,Y., Raychaudhuri,S., Inazawa,J., Yamauchi,T., Kadowaki,T., Kubo,M. and Kamatani,Y. TITLE Large-scale genome-wide association study in a Japanese population identifies novel susceptibility loci across different diseases JOURNAL Nat Genet 52 (7), 669-679 (2020) PUBMED 32514122 REFERENCE 3 (bases 1 to 2894) AUTHORS Yu,Y., Tan,R., Ren,Q., Gao,B., Sheng,Z., Zhang,J., Zheng,X., Jiang,Y., Lan,L. and Mao,Z. TITLE POT1 inhibits the efficiency but promotes the fidelity of nonhomologous end joining at non-telomeric DNA regions JOURNAL Aging (Albany NY) 9 (12), 2529-2543 (2017) PUBMED 29227966 REFERENCE 4 (bases 1 to 2894) AUTHORS Poojary,S.S., Mishra,G., Singh,T.D., Gupta,S., Shrivastav,B.R. and Tiwari,P.K. TITLE Telomere length variation and expression analysis of shelterin complex genes during gallbladder carcinogenesis JOURNAL J Cancer Res Ther 13 (2), 235-239 (2017) PUBMED 28643740 REFERENCE 5 (bases 1 to 2894) AUTHORS Karami,S., Han,Y., Pande,M., Cheng,I., Rudd,J., Pierce,B.L., Nutter,E.L., Schumacher,F.R., Kote-Jarai,Z., Lindstrom,S., Witte,J.S., Fang,S., Han,J., Kraft,P., Hunter,D.J., Song,F., Hung,R.J., McKay,J., Gruber,S.B., Chanock,S.J., Risch,A., Shen,H., Haiman,C.A., Boardman,L., Ulrich,C.M., Casey,G., Peters,U., Amin Al Olama,A., Berchuck,A., Berndt,S.I., Bezieau,S., Brennan,P., Brenner,H., Brinton,L., Caporaso,N., Chan,A.T., Chang-Claude,J., Christiani,D.C., Cunningham,J.M., Easton,D., Eeles,R.A., Eisen,T., Gala,M., Gallinger,S.J., Gayther,S.A., Goode,E.L., Gronberg,H., Henderson,B.E., Houlston,R., Joshi,A.D., Kury,S., Landi,M.T., Le Marchand,L., Muir,K., Newcomb,P.A., Permuth-Wey,J., Pharoah,P., Phelan,C., Potter,J.D., Ramus,S.J., Risch,H., Schildkraut,J., Slattery,M.L., Song,H., Wentzensen,N., White,E., Wiklund,F., Zanke,B.W., Sellers,T.A., Zheng,W., Chatterjee,N., Amos,C.I. and Doherty,J.A. CONSRTM GECCO and the GAME-ON Network: CORECT, DRIVE, ELLIPSE, FOCI, and TRICL TITLE Telomere structure and maintenance gene variants and risk of five cancer types JOURNAL Int J Cancer 139 (12), 2655-2670 (2016) PUBMED 27459707 REFERENCE 6 (bases 1 to 2894) AUTHORS Kelleher,C., Kurth,I. and Lingner,J. TITLE Human protection of telomeres 1 (POT1) is a negative regulator of telomerase activity in vitro JOURNAL Mol Cell Biol 25 (2), 808-818 (2005) PUBMED 15632080 REFERENCE 7 (bases 1 to 2894) AUTHORS Liu,D., O'Connor,M.S., Qin,J. and Songyang,Z. TITLE Telosome, a mammalian telomere-associated complex formed by multiple telomeric proteins JOURNAL J Biol Chem 279 (49), 51338-51342 (2004) PUBMED 15383534 REFERENCE 8 (bases 1 to 2894) AUTHORS Liu,D., Safari,A., O'Connor,M.S., Chan,D.W., Laegeler,A., Qin,J. and Songyang,Z. TITLE PTOP interacts with POT1 and regulates its localization to telomeres JOURNAL Nat Cell Biol 6 (7), 673-680 (2004) PUBMED 15181449 REFERENCE 9 (bases 1 to 2894) AUTHORS Loayza,D. and De Lange,T. TITLE POT1 as a terminal transducer of TRF1 telomere length control JOURNAL Nature 423 (6943), 1013-1018 (2003) PUBMED 12768206 REFERENCE 10 (bases 1 to 2894) AUTHORS Colgin,L.M., Baran,K., Baumann,P., Cech,T.R. and Reddel,R.R. TITLE Human POT1 facilitates telomere elongation by telomerase JOURNAL Curr Biol 13 (11), 942-946 (2003) PUBMED 12781132 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAXUCZ010000004.1. On Jun 4, 2021 this sequence version replaced XM_006236161.3. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: SRR26643292.16887.1, SRR26643288.18142.1 [ECO:0000332] RNAseq introns :: mixed sample support SAMEA5760383, SAMEA5760386 [ECO:0006172] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-43 JAXUCZ010000004.1 55228501-55228543 c 44-109 JAXUCZ010000004.1 55225282-55225347 c 110-331 JAXUCZ010000004.1 55220914-55221135 c 332-378 JAXUCZ010000004.1 55217874-55217920 c 379-493 JAXUCZ010000004.1 55212898-55213012 c 494-624 JAXUCZ010000004.1 55199614-55199744 c 625-915 JAXUCZ010000004.1 55196339-55196629 c 916-1071 JAXUCZ010000004.1 55192964-55193119 c 1072-1241 JAXUCZ010000004.1 55187448-55187617 c 1242-1327 JAXUCZ010000004.1 55184334-55184419 c 1328-1390 JAXUCZ010000004.1 55183125-55183187 c 1391-1547 JAXUCZ010000004.1 55180469-55180625 c 1548-1753 JAXUCZ010000004.1 55178709-55178914 c 1754-1889 JAXUCZ010000004.1 55177899-55178034 c 1890-1978 JAXUCZ010000004.1 55175863-55175951 c 1979-2070 JAXUCZ010000004.1 55174201-55174292 c 2071-2176 JAXUCZ010000004.1 55172488-55172593 c 2177-2894 JAXUCZ010000004.1 55170821-55171538 c FEATURES Location/Qualifiers source 1..2894 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN" /db_xref="taxon:10116" /chromosome="4" /map="4q22" gene 1..2894 /gene="Pot1" /gene_synonym="Pot1a" /note="protection of telomeres 1" /db_xref="GeneID:500054" /db_xref="RGD:1562696" exon 1..43 /gene="Pot1" /gene_synonym="Pot1a" /inference="alignment:Splign:2.1.0" exon 44..109 /gene="Pot1" /gene_synonym="Pot1a" /inference="alignment:Splign:2.1.0" exon 110..331 /gene="Pot1" /gene_synonym="Pot1a" /inference="alignment:Splign:2.1.0" exon 332..378 /gene="Pot1" /gene_synonym="Pot1a" /inference="alignment:Splign:2.1.0" misc_feature 340..342 /gene="Pot1" /gene_synonym="Pot1a" /note="upstream in-frame stop codon" CDS 370..2286 /gene="Pot1" /gene_synonym="Pot1a" /note="protection of telomeres 1A; protection of telomeres 1 homolog" /codon_start=1 /product="protection of telomeres protein 1" /protein_id="NP_001382080.1" /db_xref="GeneID:500054" /db_xref="RGD:1562696" /translation="
MSLVPVTPYTYTPLNLLKEGAVANVYGVVKFFKPPYLSKGTDYCSVVTIVDPTNVKLTCMLFSGNYEALPIIYKVGDIVRFHRLKIQVYKNELQGINSSGFASLTFEGTLGTPVTARTSSKVFSFTSQDQKMVEALRVWASKHIAASSSLVQLCDAQPLQYYDLTCQLLGKAEVDGTAFLLKVWDGTRTMFPSWRVSIQNLTFEGDLSHIQRLQSLVIDILVYDNHVQVAKSLKIGSFIRIYSLHTKLQSVDSETSKSLLRLEFHLHGGTSYGRGIRVLPDESSCVDQLKKDLECADSAVTQPSNGICQSKNEDSFVLSSSASGSVSLYEEERCQQVSSTILTDHQHLEKTPLCAVLKQKAPQQYRVRAKLRSYLPRRLPQSVKLICPQCHSLQEVPHEDSLDKLLQDAATKAPDIRLQGTSLYESKIWTTEGQGGRQVAVHFVKKDGVLPLSSECLILIEGGRLCEVSKLSSKFHSVIPVRSGPEDLELLDISAPFLIQGKLHHYGCKQCSSLKPIQNLNSLLNKGPWIPSSVAKVLGIVPLQYVFVMTFTLDDGTGVLDTYLKDSENFFKIPASEVLTDDNLQRNLEAIMDMICPPGIKVDAYPWLECLIKSYNVTIGTEQRICYQIFDTTVAEDV"
misc_feature 400..792 /gene="Pot1" /gene_synonym="Pot1a" /note="Telomeric single stranded DNA binding POT1/CDC13; Region: Telo_bind; smart00976" /db_xref="CDD:214949" misc_feature order(439..441,601..603,607..609,613..615,679..681) /gene="Pot1" /gene_synonym="Pot1a" /note="generic binding surface II [active]" /db_xref="CDD:239943" misc_feature order(460..471,475..477,511..513,577..579,583..585, 589..594,694..696) /gene="Pot1" /gene_synonym="Pot1a" /note="OB1/OB2 interface [polypeptide binding]; other site" /db_xref="CDD:239943" misc_feature order(466..468,475..477,481..483,493..495,511..513, 547..549,553..555,559..561,628..630,634..636,649..651) /gene="Pot1" /gene_synonym="Pot1a" /note="ssDNA binding site [nucleotide binding]; other site" /db_xref="CDD:239943" misc_feature 850..1206 /gene="Pot1" /gene_synonym="Pot1a" /note="A subfamily of OB folds similar to the second OB fold (OB2) of human protection of telomeres 1 protein (hPOT1). POT1 proteins bind to the single-stranded (ss) 3-prime ends of the telomere. hPOT1 binds specifically to ss telomeric DNA repeats ending with...; Region: hPOT1_OB2; cd04498" /db_xref="CDD:239944" misc_feature order(850..852,1036..1041,1096..1098,1102..1104, 1168..1173,1180..1185,1189..1191) /gene="Pot1" /gene_synonym="Pot1a" /note="ssDNA binding [nucleotide binding]; other site" /db_xref="CDD:239944" misc_feature order(1087..1089,1093..1095,1177..1179,1186..1188, 1198..1200) /gene="Pot1" /gene_synonym="Pot1a" /note="binding surface II [active]" /db_xref="CDD:239944" misc_feature 1411..2271 /gene="Pot1" /gene_synonym="Pot1a" /note="Protection Of Telomeres Protein 1 (POT1) C-terminal region; Region: Pot1C; cd20374" /db_xref="CDD:380669" misc_feature order(1411..1413,1474..1476,1495..1497,1726..1728, 1807..1809,1813..1815,1978..1980,1987..1989,2098..2100, 2143..2145,2155..2157,2251..2253) /gene="Pot1" /gene_synonym="Pot1a" /note="disease mutation sites; other site" /db_xref="CDD:380669" misc_feature order(1495..1497,1501..1512,1519..1521,1540..1542, 1546..1548,1552..1557,1561..1563,1642..1644,1648..1650, 1654..1662,1678..1680,1696..1698,1723..1731,1768..1770, 1777..1782,1789..1794,2011..2019,2065..2067,2101..2106, 2113..2115,2122..2124,2206..2208,2212..2214,2218..2220, 2239..2241,2245..2247,2251..2253) /gene="Pot1" /gene_synonym="Pot1a" /note="heterodimer interface [polypeptide binding]; other site" /db_xref="CDD:380669" exon 379..493 /gene="Pot1" /gene_synonym="Pot1a" /inference="alignment:Splign:2.1.0" exon 494..624 /gene="Pot1" /gene_synonym="Pot1a" /inference="alignment:Splign:2.1.0" exon 625..915 /gene="Pot1" /gene_synonym="Pot1a" /inference="alignment:Splign:2.1.0" exon 916..1071 /gene="Pot1" /gene_synonym="Pot1a" /inference="alignment:Splign:2.1.0" exon 1072..1241 /gene="Pot1" /gene_synonym="Pot1a" /inference="alignment:Splign:2.1.0" exon 1242..1327 /gene="Pot1" /gene_synonym="Pot1a" /inference="alignment:Splign:2.1.0" exon 1328..1390 /gene="Pot1" /gene_synonym="Pot1a" /inference="alignment:Splign:2.1.0" exon 1391..1547 /gene="Pot1" /gene_synonym="Pot1a" /inference="alignment:Splign:2.1.0" exon 1548..1753 /gene="Pot1" /gene_synonym="Pot1a" /inference="alignment:Splign:2.1.0" exon 1754..1889 /gene="Pot1" /gene_synonym="Pot1a" /inference="alignment:Splign:2.1.0" exon 1890..1978 /gene="Pot1" /gene_synonym="Pot1a" /inference="alignment:Splign:2.1.0" exon 1979..2070 /gene="Pot1" /gene_synonym="Pot1a" /inference="alignment:Splign:2.1.0" exon 2071..2176 /gene="Pot1" /gene_synonym="Pot1a" /inference="alignment:Splign:2.1.0" exon 2177..2894 /gene="Pot1" /gene_synonym="Pot1a" /inference="alignment:Splign:2.1.0" ORIGIN
tgggcgcgtcaatgcagaccttagttgtccgcgggtcttgctgggaaaactcagttgttcttaatgccttgcggaagtaaaacagctgttttgaagattagactttgagaggctgtaggcctaacgatgactgtctgcgtgttggagagactaagaacctcggtcctgttcagccaatctgtttgatgcttcagcagtccctacctggtgctgaaaccctacagtatttctgcagagcgtttggaagactctgaagctgctgtctgatgtcagtaaatgacagcagcagcagcggcagcgggattgacgcactcactagcaggaatgaaaggtttgtgataaatctatgagaggatttcccatcaaacaatgtctttggttccggtaactccctatacatatacacccctgaatctacttaaggaaggtgcagttgccaatgtctatggtgttgtgaaattctttaagcctccatatctcagcaaaggaactgattattgctcagttgtaacaattgtggacccaacaaatgtgaagttaacgtgcatgctctttagtggaaactatgaagcccttccgatcatttacaaagttggagacattgttcgcttccataggctgaagatccaagtatataaaaatgagcttcagggaatcaacagctctgggttcgcgtctttgacatttgaaggaacattagggacacctgtcacagcacgtacttcaagcaaagtttttagcttcacttctcaggaccaaaaaatggtagaagctttgcgagtttgggcatccaagcacattgcagcttcttcaagtttagtgcagctgtgtgacgctcagcccctgcaatattatgacctgacctgtcagcttctgggtaaagcagaagtggatggaacagcctttcttctaaaggtatgggacggaaccaggactatgtttccctcttggagagtctccatacaaaatcttacctttgaaggtgacttgagtcacattcagcggctacagagtctggtgatagacattctagtctatgacaatcatgttcaagtggcaaaatccctcaagattggaagctttattcgaatctatagcctccataccaaacttcagtctgttgattcagaaaccagcaagtcattgttaaggctggagtttcatctccatggagggaccagttatggtcgggggattagggttttgccagatgaaagctcgtgtgtggatcagctgaaaaaagatttagaatgtgcagattcggcagtcactcaaccctcaaatggtatctgtcaatcaaaaaatgaggatagctttgtactttcaagctctgcatcaggctcagtatccctgtatgaggaagaacgatgtcagcaagtctcttctacaatactcacagatcaccagcacttagagaaaactccattgtgtgccgttttgaagcaaaaggctccgcagcaatatcgggtccgtgccaagctgaggtcgtatttgcccaggagacttccccagtctgttaaactgatctgtccgcagtgccattcactacaagaagttccacatgaggacagtttggataaacttttgcaagatgctgcaactaaagcgccagacatcaggctgcaaggtacatctttgtatgaatcaaagatctggaccaccgaaggccagggaggacggcaggtcgctgttcactttgtgaagaaggatggtgttctcccactttcaagtgaatgtctaattttgatagaaggaggaagactctgtgaagtgtccaagctgtccagcaagttccacagtgtgatccctgtgaggtccggccctgaggatctggagctcctcgacatttcagccccattcctcatacagggaaagctgcatcactatggatgtaaacagtgttcaagcttgaaacctatacaaaacctaaattcccttcttaataaaggaccatggattccttcctccgtggcaaaagtcctgggcattgtgcctctgcagtatgtgtttgttatgacgttcactctggatgatggaacaggagtgttggacacttacctcaaggattctgaaaactttttcaagatcccagcatctgaagtcctcactgatgacaaccttcagaggaatctggaagcgatcatggatatgatatgccctcctggaataaaagttgatgcatacccgtggcttgagtgcctcatcaagtcctacaatgtcaccattggaacagaacaacgaatttgctaccagatttttgacaccacggttgcagaagatgtctagtgctgccattcagtgcagtgtgtatggattttacaattttagaaaaggtcatgactctgagattctcagaagacacttggctattgtcaaaagtattgtatccattttcactgtagttcttttgtacagaaaactattttgttatttatgccatcttgtgaacatgtcagaaatcccttgctgctcatcatgtcccagggagtataaaatgagacagcactggttggggagaatgcccactctcatttttaaaacactggtagcaacttctccttctgtgctgtttgattctttttttttttttttttttgtacagaagaatctgcttagcaacttctgaaagaattctccctctacttccacacatgagtatcaggttaactgagtgcttgttgaacagatgccgtctcaccaagcggggatatactaaaaggagggtttcctttcagaagacatggctttgtttgggtgctcttgatgcccatttcaggataaatgtatctctttgaaccaaatagtatgcgtgactttctgcttctctctggaatactagaagctatttaatttcataccaactaataaagtgataggatttatattttcatgaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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