2024-11-01 08:31:47, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS NM_001107738 5206 bp mRNA linear ROD 22-MAR-2023 DEFINITION Rattus norvegicus ITPR interacting domain containing 2 (Itprid2), mRNA. ACCESSION NM_001107738 XM_001067501 XM_230036 VERSION NM_001107738.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE 1 (bases 1 to 5206) AUTHORS Inokuchi J, Komiya M, Baba I, Naito S, Sasazuki T and Shirasawa S. TITLE Deregulated expression of KRAP, a novel gene encoding actin-interacting protein, in human colon cancer cells JOURNAL J Hum Genet 49 (1), 46-52 (2004) PUBMED 14673706 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CH473949.1. On or before Oct 4, 2007 this sequence version replaced XM_230036.4, XM_001067501.1. ##Evidence-Data-START## RNAseq introns :: single sample supports all introns SAMD00132262, SAMD00132266 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on conservation, expression, longest protein ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..5206 /organism="Rattus norvegicus" /mol_type="mRNA" /db_xref="taxon:10116" /chromosome="3" /map="3q24" gene 1..5206 /gene="Itprid2" /gene_synonym="Ssfa2" /note="ITPR interacting domain containing 2" /db_xref="GeneID:311146" /db_xref="RGD:1310767" exon 1..422 /gene="Itprid2" /gene_synonym="Ssfa2" /inference="alignment:Splign:2.1.0" CDS 218..3985 /gene="Itprid2" /gene_synonym="Ssfa2" /note="sperm specific antigen 2; sperm-specific antigen 3" /codon_start=1 /product="protein ITPRID2" /protein_id="NP_001101208.1" /db_xref="GeneID:311146" /db_xref="RGD:1310767" /translation="
MNRPLSAEAEEELEWQVASRRRKAWAKCRSSWQASETEDLSTETTTQDEDEDDEEDLPGAKLPAAAGRGNVPNEKIAIWLKDCRTPLGASLDEQSSVGPKGVLLRNGGSFEDDLSLGAEANHLHEPDAQVENCNNILAKERRLQFHQKGRSMNSTGSGKSSGTVSSVSELLELYEEDPEEILYNLGFGRDEPDIASKIPSRFFNSSSFARGIDIKVFLSAQMQRMEVENPNYALTSRFRQIEVLTTVANAFSSLYSQVSGTPLQRIGSMSSVTSTKEAADCPPPLTRSNTANRLMKTLSKLNLCVDKTEKAEGSSTPAAEKGRSLSVSLSEDGGGGKSDPKPQKVIKKKESSSMLATVTEEVSGSSSTITDSIDADRLSDEAESNISHKVESEENGEAHSQNDALRQSAVTDPDFGHDGGSMSSLCELESSSELKSAQASSSEKEPCATLTIPSIRNIMVQQKDSFEMEEVQSTEGEAPHVPATCQLSLAKSKRDHLLRTASQHSDSSGFAEDSTDCLSLNHLQVHESLQAMGSSADSCDSETTVTSLGEDHVTPTAPDQPYFNESEEESLASLQKGRAKVIVAEKRKADNQDFPHCATAENAGNNESVKGPCEPGPQITETETEEEPPLAATGELLREGSGESDMDKGSECEFAQYTTHHILRSLTSFEEAQGSGMSSKKKTEFPSSVDRVNTALQRAQMKVCSMSGQRVGRSLIKSKDLLKQRYFLAKAGYPLRRSQSLPTTLLSPVRVVSSVNVRLSPGKETRCSPPSFTYKYTPEEEQELEKQVTEHDGQSLVKSTIFIPPSSVKKEEAPQSEGTRLEECHHGRLAPCPQFAPISQSTCSLHSVHSEWQDRPLCEHMRTLSAHSVPNISGAACSAFSSPFGCPYSHRHAAHPCRPCPVNPPSAIEMQLRRVLHDIRNSLQNLSQYPMTRGPDLAAAPYSTQKSSVLPLYENTFQELQVVRRSLNLFRTQMMDLELAMLRQQTVVYPHMTEEDRYEVDQLQGLRNSVRMELQDLELQLEERLLGLDEQLRAVRVPSPFRSSALPGMCGSRSADNLSCPSPLNVMEPVTELMREQSYLKSELGLSLGDMGYEIPPGESSESVFSQATSESSSVCSSPSHTNRRSRGPSGSKPRARLVARKKIFRASVALTPTAPSRTGSVQTPPDLESSEEAGAAEEASQVVGLTSHVEEEPEDLSLMPTAEEMHRNVEQDELQQVIREIKESIVGEIRREIVSGLLAAVSSSKASASKQDSH"
misc_feature 653..1114 /gene="Itprid2" /gene_synonym="Ssfa2" /note="Ki-ras-induced actin-interacting protein-IP3R-interacting domain; Region: KRAP_IP3R_bind; pfam14722" /db_xref="CDD:464280" misc_feature 2804..3313 /gene="Itprid2" /gene_synonym="Ssfa2" /note="Sperm-specific antigen 2 C-terminus; Region: SSFA2_C; pfam14723" /db_xref="CDD:464281" exon 423..468 /gene="Itprid2" /gene_synonym="Ssfa2" /inference="alignment:Splign:2.1.0" exon 469..518 /gene="Itprid2" /gene_synonym="Ssfa2" /inference="alignment:Splign:2.1.0" exon 519..575 /gene="Itprid2" /gene_synonym="Ssfa2" /inference="alignment:Splign:2.1.0" exon 576..615 /gene="Itprid2" /gene_synonym="Ssfa2" /inference="alignment:Splign:2.1.0" exon 616..714 /gene="Itprid2" /gene_synonym="Ssfa2" /inference="alignment:Splign:2.1.0" exon 715..923 /gene="Itprid2" /gene_synonym="Ssfa2" /inference="alignment:Splign:2.1.0" exon 924..1627 /gene="Itprid2" /gene_synonym="Ssfa2" /inference="alignment:Splign:2.1.0" exon 1628..1700 /gene="Itprid2" /gene_synonym="Ssfa2" /inference="alignment:Splign:2.1.0" exon 1701..1789 /gene="Itprid2" /gene_synonym="Ssfa2" /inference="alignment:Splign:2.1.0" exon 1790..3001 /gene="Itprid2" /gene_synonym="Ssfa2" /inference="alignment:Splign:2.1.0" exon 3002..3079 /gene="Itprid2" /gene_synonym="Ssfa2" /inference="alignment:Splign:2.1.0" exon 3080..3207 /gene="Itprid2" /gene_synonym="Ssfa2" /inference="alignment:Splign:2.1.0" exon 3208..3358 /gene="Itprid2" /gene_synonym="Ssfa2" /inference="alignment:Splign:2.1.0" exon 3359..3424 /gene="Itprid2" /gene_synonym="Ssfa2" /inference="alignment:Splign:2.1.0" exon 3425..3880 /gene="Itprid2" /gene_synonym="Ssfa2" /inference="alignment:Splign:2.1.0" exon 3881..3999 /gene="Itprid2" /gene_synonym="Ssfa2" /inference="alignment:Splign:2.1.0" exon 4000..5206 /gene="Itprid2" /gene_synonym="Ssfa2" /inference="alignment:Splign:2.1.0" ORIGIN
cgccaggccaggccgggttcacgtgaagcgccagccctcggcccctccctcccttccttccctccccccctccctgtcccctcctcctgaggcgcccgctctggctcccccgggccccctgcccggctgggcgctgacagcagcggcgggggtccccgcagccgccgctgtgtcccgcgcaggctcgggctgggcccgcgaagcccccggcgcggccatgaaccgacccttgtcggcggaggcggaggaggaactggagtggcaagtggcgagtcgcaggaggaaggcctgggccaagtgccgcagctcctggcaggcgtcggagaccgaggatctgtccacagagacgacgacacaggacgaggacgaggacgacgaggaggacctcccaggcgcgaagctgccggcagccgcggggcgaggaaacgtgcccaacgagaagatcgcgatatggctcaaagactgccgcactcctttgggagcctcactggatgagcaaagcagcgttgggcccaagggtgtgcttttgagaaatggaggaagctttgaagatgacttgtcactgggagctgaagccaatcacctacatgaacctgatgctcaagttgaaaactgcaacaatatcttggccaaagagagaagacttcagtttcatcagaaagggagaagtatgaattccactgggtctgggaaaagcagtggtactgtgtcaagtgtttcagaactgctggagctttacgaggaagatcctgaagaaattctatataatcttggatttggacgagatgaaccagatattgcttctaaaattccttccagattttttaattcgtcatcctttgccagaggcatagacattaaagtgtttttgagtgcgcaaatgcagcggatggaagtggagaacccaaattacgctctgacaagccgttttcgtcaaattgaagtcctcactactgtggccaatgcattttcttctctgtattcccaagtctctggaaccccattgcagaggattggaagtatgtcctcagtgacctccaccaaggaggcggcagactgccctcctcccctgactcgaagcaacactgcaaaccgtctgatgaaaacactctcaaaactaaacttgtgtgttgataaaacagagaaagcagaagggagctctacccccgctgctgagaaaggaaggagtctaagtgtttcactgtctgaagatggtggaggcggcaagagtgacccaaagcctcagaaggttataaagaagaaggagtcctcttcaatgctggctacggttacagaagaagtctcaggcagttcctcgaccatcacagacagcattgatgctgacaggctttctgatgaagcagagagtaacattagccacaaggtggaaagtgaagaaaatggagaagctcacagtcagaatgacgcgctccggcagtctgctgttacagatcctgactttggccatgacgggggcagcatgtccagcctctgtgagctggagagcagcagtgagctgaagagtgcccaggcgtcctcgagtgagaaagagccatgtgcaaccctgacaatcccatccataagaaacataatggtgcagcagaaagactcctttgagatggaagaggtccagagcacagagggagaagcacctcacgtgccagccacttgccagctaagccttgccaagtcaaaaagagatcatctgttgcgaactgcaagtcagcattctgatagcagcgggtttgctgaggattccacagactgcctctccctcaatcaccttcaggttcatgagtccctgcaagccatggggagcagtgctgacagctgcgacagtgaaacaactgtcacatcacttggtgaagaccatgtgactccgacagcaccagaccagccttacttcaatgaatcagaggaggagtctcttgcctctctgcagaagggaagagcaaaggtcatagttgctgagaaaagaaaagcagataaccaagatttcccccactgtgcgactgcagagaatgctggaaacaatgagtccgtgaagggtccatgtgagcctgggcctcagattacagagactgagacagaggaggagccacctctggcagccactggagagctcctgagggaagggagtggagagagtgatatggataagggcagtgaatgtgaatttgcgcagtacaccacacaccacattctcaggtccttgacttcctttgaagaggctcagggcagcggtatgagctctaaaaagaaaactgagtttccctcttctgtggacagagtgaacactgccctgcagagagctcaaatgaaggtttgcagtatgtctggtcagagagtagggcgtagcctaataaaatcaaaggatctgttgaaacaaaggtactttctcgcaaaagctggctatcctctaagaaggtctcagtctttgcccaccactttactgagcccagtaagggtggtatcttctgtcaatgtacgattatctccaggaaaagagaccaggtgcagcccaccatccttcacctacaagtacacacctgaagaggaacaagaattggaaaagcaagtaactgaacacgatggccagtctttggttaaatctaccatcttcatccctccatcctctgtgaagaaagaagaggcccctcagagtgaggggacacgactggaggaatgccaccatggaaggcttgccccctgcccacagtttgctccaatctcccagtccacctgctcccttcactctgtccactctgagtggcaggacaggcctctgtgtgaacacatgagaactctgagtgcccatagtgtccccaacatatcaggtgctgcatgtagtgccttctcctctccttttggttgtccctactcacatagacacgctgcccacccatgcaggccatgccctgtgaaccctccttccgccatagagatgcagttgcggagagtgttacatgacattagaaactcactacagaatctctcacagtaccctatgacgagaggacctgatcttgctgctgctccatacagtactcagaagtcgtctgttctacctctttatgaaaatacctttcaggagcttcaggttgtgagacggagcctgaatctgttcagaacgcagatgatggacttggagctggccatgctgcgtcagcaaacggtggtgtaccctcatatgacagaggaggacaggtatgaagttgatcagctgcagggcctgcggaactctgtccgaatggagctgcaggacctggagctgcagctggaggagcgcttgctgggcctggatgagcagctccgtgcagtgcgggtgccttcaccattccgttcctctgcactcccggggatgtgtggcagtaggagcgctgataacttatcatgcccgtctccactgaacgtcatggagccggtcacagaactgatgcgagagcagtcgtacctgaagtctgagctgggcctgagccttggagacatggggtatgagattcctcctggagagagctcagagtccgttttctctcaagctacatcagagtcatcttccgtctgctccagcccctcccacaccaacagaagatctagagggccatccgggagcaaacccagagcccgcttagtggcgagaaagaagatattccgagcctctgtggccctgacaccaactgccccgtctagaacaggctctgtgcaaacacctccagatctggagagttctgaagaagctggagcagctgaagaagcctcacaagtcgtgggacttacatctcacgtggaggaagaaccagaggatctctctctgatgccaacggctgaggaaatgcaccggaatgtggagcaggacgagctgcagcaggtcatccgcgagattaaagagtctattgttggggaaattagacgagaaattgtaagtggacttttggcagcagtgtcttcaagtaaagcatctgcttctaagcaggacagccactgagtgggacatactcgggttgggatgcattcccttagcctacacaggtgttgttggtgatttatgctggtgaaggtgtctgtcctatggaagatattttctactgagctgggctacttacacagtggactatgtgcatttctgtatgcagtgtacaggttacggttctatgcatcaaaattttaaaaaatatacttagaaacgtaggcactttgctgactcatttctaaactatcagactggccatttgaaagactagtatttatttgtatgtcaatatttttccagttgatgtcccatgtagagttaattgtaaaacttgaagaatccagacataaccgacttataaataacatatttcttcagactagcttctacaacactgacctctatgaggtatttactgtgcaataacagattcgtcttttgagtgcttgaagcaaccgatgattttttcctccactgctcttcatggggtcacttctaagaagactaatggttctgttgtaaagattgctcttaattctcgaggaggctactgagaagcagtagggtagatctcatgaggttacctacaactacttcatgttcttacactgtaagcctgttgctttgccccaacaaatgtaatttaattatagctatgggccttctggtagacactgtactctccgcgttgtaactttattatagctatgtgccttgtggtaagcattatgtactctgccttgtccagatgtcttactctaaggtgttcttctgtcttttagactaagtagtattgtcaagataatggggcctatgacttgaatggatagaatagaaatgaataagctgggttttgtttttccaaatgagatttagatttgtttttctcatgcataaatgattttaattcagttttaaccagtgaaagctcatggttttcttaaaacaaaaacaaaaaaacaaaggttcctatctgatactatatatgtcaaataaatgtataaagtagcaaccaaatgttattagaaattagtcttttagtatttgtaattttcaactccgattatgttactttgtgtgaaaatttttagtcaaaagtgcttggaaataattagcattctttgaaagaatacctaaaaagtttataaatatttgaactatcacacaaaggctattctctaaaaaacaaaaaccccattaaaacaataaagtatttattttgcctaaaatgttaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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