2024-04-20 01:44:15, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_039098347 4961 bp mRNA linear ROD 11-JUN-2023 DEFINITION PREDICTED: Rattus norvegicus zinc finger protein 729-like (LOC102556098), mRNA. ACCESSION XM_039098347 VERSION XM_039098347.1 DBLINK BioProject: PRJNA677964 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_051336.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_015227675.2-RS_2023_06 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 06/06/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4961 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN/NHsdMcwi" /db_xref="taxon:10116" /chromosome="1" /sex="male" /tissue_type="kidney" /country="USA: Wisconsin, Milwaukee, Medical College of Wisconsin" /collection_date="2019-03-08" /collected_by="Rebecca Schilling" gene 1..4961 /gene="LOC102556098" /note="zinc finger protein 729-like; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 2 long SRA reads, 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns" /db_xref="GeneID:102556098" /db_xref="RGD:7732163" CDS 2372..4276 /gene="LOC102556098" /codon_start=1 /product="zinc finger protein 431-like" /protein_id="XP_038954275.1" /db_xref="GeneID:102556098" /db_xref="RGD:7732163" /translation="
MDALTYDDVHVNFTREEWALLDPSQKSLYKDVMQETYRNLTAIGYNWEDHSFEEHCQSFRRYGRHERCHTGEKPSENTQCGKAFAQHSHLQRHKSTHTGEKLYECKPRDKAFTYDSQLQTLERIHSGEKPYKCNQCGKTFERRCNLGRHKLIHTGRKSYKCNQCGKAFARHSHLKLHGITHTGEKPYECDQCGKAFASHSYLQVHKTIHTGEKPYVCDQCGKAFAHSRPLRRHKIMHTRKKTYKCNQGGKAFARHSHLKTHGVTHTGEKPYKCDQCGKAFASHRYLQVHKRIHTGEKPYECDQCGKAFASHSHLQVHRITHTGEKPYKCDQCGKAFAYHSYLQVHKRIHTGEKPYVCDQCGKAFAHLRHLQVHGITHTGEKPYKCDQCGKAFTSHSYLQVHKRIHTGEKPYVCDQCGKAFAQLSHLQVHGITHTGEKPYKCDQCGKAFSSHSYLQVHKRIHTGEKFYECDQCGKAFASHSHLQVHKRIHTGEKPYVCDQCGKDFVVQRDLKRHKRTHTGEKPYKCNECGKAFVWNGSLRAHKVIHTGEKPYKCNECGKAFACNTSLRTHKAIHTGVKPFKCKQCGKAFVGQNYLKKHERIHTGEKLYECNECGKAFVFDASLRKHKAVHTGVKP"
misc_feature 2381..2503 /gene="LOC102556098" /note="KRAB box; Region: KRAB; pfam01352" /db_xref="CDD:426216" misc_feature <2561..3046 /gene="LOC102556098" /note="FOG: Zn-finger [General function prediction only]; Region: COG5048" /db_xref="CDD:227381" misc_feature 2603..2746 /gene="LOC102556098" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 2768..2830 /gene="LOC102556098" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(2768..2770,2777..2779,2816..2818,2828..2830) /gene="LOC102556098" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:275368" misc_feature 2840..3970 /gene="LOC102556098" /note="FOG: Zn-finger [General function prediction only]; Region: COG5048" /db_xref="CDD:227381" misc_feature 2852..2914 /gene="LOC102556098" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(2852..2854,2861..2863,2900..2902,2912..2914) /gene="LOC102556098" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:275368" misc_feature order(2867..2869,2873..2875,2879..2881,2885..2890, 2897..2902,2909..2911,2951..2953,2957..2959,2969..2974, 2981..2986,2993..2995,3035..3037,3041..3043,3047..3049, 3053..3058,3065..3070,3077..3079) /gene="LOC102556098" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 2936..2998 /gene="LOC102556098" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 3020..3082 /gene="LOC102556098" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 3104..3166 /gene="LOC102556098" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(3104..3106,3113..3115,3152..3154,3164..3166) /gene="LOC102556098" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:275368" misc_feature 3188..3250 /gene="LOC102556098" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(3188..3190,3197..3199,3236..3238,3248..3250) /gene="LOC102556098" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:275368" misc_feature order(3203..3205,3209..3211,3215..3217,3221..3226, 3233..3238,3245..3247,3287..3289,3293..3295,3305..3310, 3317..3322,3329..3331,3371..3373,3377..3379,3383..3385, 3389..3394,3401..3406,3413..3415) /gene="LOC102556098" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 3272..3334 /gene="LOC102556098" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 3356..3418 /gene="LOC102556098" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 3440..3502 /gene="LOC102556098" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 3524..3586 /gene="LOC102556098" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(3524..3526,3533..3535,3572..3574,3584..3586) /gene="LOC102556098" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:275368" misc_feature order(3539..3541,3545..3547,3551..3553,3557..3562, 3569..3574,3581..3583,3623..3625,3629..3631,3641..3646, 3653..3658,3665..3667,3707..3709,3713..3715,3719..3721, 3725..3730,3737..3742,3749..3751) /gene="LOC102556098" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 3608..3670 /gene="LOC102556098" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 3692..3754 /gene="LOC102556098" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 3776..3838 /gene="LOC102556098" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 3860..3922 /gene="LOC102556098" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 3944..4006 /gene="LOC102556098" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 3980..4057 /gene="LOC102556098" /note="Zinc-finger double domain; Region: zf-H2C2_2; pfam13465" /db_xref="CDD:433230" misc_feature 4028..4090 /gene="LOC102556098" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 4064..4138 /gene="LOC102556098" /note="Zinc-finger double domain; Region: zf-H2C2_2; pfam13465" /db_xref="CDD:433230" misc_feature 4112..4174 /gene="LOC102556098" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 4196..4258 /gene="LOC102556098" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" ORIGIN
tttatctttttcatagtgatttgcatatttgctgtcttgatttatgcatttaaattttccatattctttattatcttccacactactttttcttaattttaagttgtgtttgataagttagagaattttattttcatttatatgtataagtattttgcctttatgtatgtttgagcaccatgttcctggtgtcttccgtggaggtcagaagaggaaatcagattttctggaactggagtaggacatggttgtgagttcctatcccacacctggaattaaaacaataacatgttcacttaccgtaattgggttttttaacaaacccaaactcttattaaaactaccagtagttgcacttccagaaaatctgatgccctatactgaccttcaaaggtcataaataatattatataaagaggtttgtataactttttaaagtgatgtattgtgcctgtgactgtgctgtgtatggatgccctataggccagaagtatacgatcttctagaactggatttagggtacttgtggactacctgacctgtatcccaagaaccaaatgcaggtcctcttcagaaatcatagacattgtggactccaagctcctcagcctggacccagtgagttttgaagtgtctgttgtatcatcaactcctcttgaacctgattttcttggtgtgttggttcacagtgaatgctgagatcaggggagaggaaggctgtccttttcaatgaatagttcttactgtctgtgagcctttgtttgcagttgatccctgtcaacatgatctgactcacagtttgcatctactgctttataaggtatttcattgtcttcccaagcattcaatgtgctagactaggttgtctgacatttttttttactttttattatatttattaattcgtgactgtgacaactaccccattttccaagaaagttttctcttgatactgctacagtgtgctgcagtatcatggtaaggggctgtaagtggcatgaaacataaggaccacaatttttaactgcaagccatgatggtgtgtaatgattaaatgaaaatatttgttatggatggtcagatgaagattccaaaatatcatatctaaggtattttcaattgtttctcctgtcttcttgcagtatttgtggctataaacattgtcttgtgcatgattttaaatgtcccatttttaattcctcattgcaattttggttccagtcatatcatgaatggagtgatcatggagcaggacaagctggcctgctcctgtattgatgagaacttcacaactaactataagatgttggccaccctggttgaagggaactttttagaggtctaactggatttccatgtccccacactgatctgtgtggctgtaaacattttccaaaacgtcaagatatatgtcttgcttttctgcaggaaaatcagcaatgtgaaatcacttgaccatcctaactttatcaagctgtttcacatggtcagacaagagaaaacacctaccagttgaaggataatgccttggatggagagacactagaacaagtcattgaaggtgggggtctttagaggaaagtctctatgcaaagttcaaaggatgtttgctgagatagtacatgctgtgcagtactgccatgaccatcacattttccacagagacataaagaccagcaagctgttaatcgacagcagtaggaacgccaagctgtgtgattttggcctgggcagaagctagcagatttctgggacacacttccttacagtgccccagaattttagcaagcacaggaacatgagagctgccctgtggatatctggagtttaggggtcctcctgttcttcaaggtggccaggatctcacctttctgaggcaagtattttgcaggtgtgaaactgcagattatcaagcaccacaaactttagcattcctttttatgtttccatttattttttaaggtcatcattgaactattgattgtcaattccagaagaaatcccaccatccacaaaatcatgatgtgcctcatgattagtgaaagtgaggcatgtttattacctccttcctgtgtatttctgctttgaagttttgaagaggaccagaagccaggcagtaggaatgtacaggctcttttaacaatttgatgctcactctaacccttacggaggtgctcaagtctctcaagactactggccaatcagagttttcactggacgtgccaatcagaagagaaggcgggcatttccgggtgccttgttgcaggattcgcttagtcgccaagccttcttaaatggtcctgcctgctgtgctctgtgtcccgcggttggattctgtgaggcatgctcaggcaagctccaaagttgcgacatggacgcattgacctatgatgatgtacatgtgaacttcactcgagaagaatgggctttgctggatccttcacagaagagtctctacaaagatgtgatgcaggagacctacaggaacctcactgctataggttacaattgggaagaccatagttttgaagaacattgtcaaagtttcagaagatatggaaggcatgaaagatgtcatactggagagaaaccatctgaaaatactcagtgtggtaaagcctttgcacaacatagtcatctccaaagacataagagcacacatactggagagaaactctatgaatgtaagccacgtgataaagcctttacatacgattctcagcttcaaactcttgaaaggattcatagtggagaaaaaccctacaaatgtaatcaatgtggtaaaacctttgaacgccgttgtaatcttggaaggcataaactaatacatactggaagaaaatcctacaaatgcaatcagtgtggtaaagcctttgcacgacacagtcatctcaaactgcatggaataacacatactggagagaaaccttacgaatgtgatcaatgtggtaaagcctttgcatctcatagttatctccaagtacataaaacaatacatactggagagaagccctatgtgtgtgatcaatgtggtaaagcctttgcacatagtcgtcctcttagaaggcataaaataatgcatactaggaaaaaaacctacaaatgcaatcagggtggtaaagcctttgcacgacacagccatctcaaaacgcatggagtaacacatactggagagaaaccttacaagtgtgatcaatgtggtaaagcctttgcatctcataggtatctccaagtacataaaagaatacatactggagagaagccctatgaatgtgatcaatgtggtaaagcctttgcatctcatagtcatctccaagttcatagaataacacatactggagagaaaccttacaagtgtgatcaatgtggtaaagcctttgcatatcatagttatctccaagtacataaaagaatacatactggagagaagccctatgtatgtgaccaatgtggtaaagcctttgcacatctccgtcatctccaagttcatggaataacacatactggagagaaaccttacaagtgtgatcagtgtggtaaagcctttacatctcatagttatctccaagtacataaaagaatacatactggagagaagccctatgtatgtgaccaatgtggtaaagcctttgcacaactcagtcatctccaagttcatggaataacacatactggagagaaaccttacaagtgtgatcaatgtggtaaagccttttcatctcatagttatctccaagtacataaaagaatacatactggagagaagttctatgaatgtgatcaatgtggtaaagcctttgcatctcatagtcatctccaagtacataaaagaatacatactggagagaagccctatgtatgtgatcaatgtggtaaagactttgtagttcagagggatcttaaaagacataaaagaacacatactggcgagaaaccttacaaatgtaatgaatgtggtaaagcctttgtatggaatggtagtctccgagcacataaagtaatacatactggagagaaaccttacaaatgtaatgaatgtggtaaagcctttgcatgtaacactagtctccgaacacataaagcaatacatactggagtgaaacctttcaaatgtaagcagtgtggtaaagcctttgtaggtcagaattaccttaaaaagcatgaaagaattcatactggagagaaactttatgaatgtaatgaatgtggtaaagcttttgtatttgatgctagtctccgaaaacataaagcagtacatactggagtgaaaccttaagaatgtaagcaatgtggtaaagcctttgtaggtcagaatgaccttaaaaggcatgaaagaattcatactggagagaaaccttacaaatggaatgaatgaattaaagcctttgtatgtaatgctagtctccgaaaacataaagcaacacatactagagtgaaaccttatgattgtaagcaatttagtaagttctttgcctctcatgatcaactttgacaacatgaaagaattcatactggagagcaaccttacaaatgtagtcaatgtggtaaagccttttcacaatcaagccacctccaactacataaaagaacacatacatactaaagagtaaccctatgaatgtaaccaatgtagtaaagcctttactgtgatcttcaaaggtatggtggtttaaatatacttggcccatggcaagtggcagtgttaggaggtatggcctttttggagtagatgtggcctttgaggatgtaagtcactgtgggggagggtgggctttgagtccccatgcttaaactctgcccagggcagaagagtcttctggctgccttctgatcaagatgtagaactctctcctccagcaccatgtctgcttggacactgacattccttccaccttgataatagactgaacctctgaatctgtatacctcccctccccccaattaaatgtcctttataagaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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