2024-03-29 20:54:46, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_039098333 2351 bp mRNA linear ROD 11-JUN-2023 DEFINITION PREDICTED: Rattus norvegicus zinc finger protein 431-like (LOC103690914), transcript variant X3, mRNA. ACCESSION XM_039098333 VERSION XM_039098333.1 DBLINK BioProject: PRJNA677964 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_051336.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_015227675.2-RS_2023_06 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 06/06/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2351 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN/NHsdMcwi" /db_xref="taxon:10116" /chromosome="1" /sex="male" /tissue_type="kidney" /country="USA: Wisconsin, Milwaukee, Medical College of Wisconsin" /collection_date="2019-03-08" /collected_by="Rebecca Schilling" gene 1..2351 /gene="LOC103690914" /note="zinc finger protein 431-like; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 5 Proteins, and 74% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns" /db_xref="GeneID:103690914" /db_xref="RGD:9213653" CDS 658..2214 /gene="LOC103690914" /codon_start=1 /product="zinc finger protein 431-like isoform X3" /protein_id="XP_038954261.1" /db_xref="GeneID:103690914" /db_xref="RGD:9213653" /translation="
MQETYRNLTAIGYNWEDHSIEEHCQSFRRHGRHERCHTGEKPSENTQCGKAFAQHSRLQRHKNTHTGEKLCECKPHDKAFTYDSQLQTLERIHSGEKPYKYNQCGKAFERRCNLGRHKLIHTGRKSYKCNQCGKAFSQNSHLQTHKSTHTREELYKCKQCGKAFTCHNELQSHKRIHTGEKSYECNQCGKAFKSHRYLQVHKAIHTGEKPYVCDQCGKAFARLSHLKTHGITHSGKKPCKCDQCGKAFASHSYLQVHKRIHTGEKPYVCDRCGKAFASHSYLQVHKRIHTGEKPYVCDWCGKAFASHSYLQVHKRIHTGEKPYVCDRCDKAFAYHSYLQVHKRIHTGEKLYECDQCGKAFASHSYLQVHKKIHTGEKPYVCDQCGKDFVVQSDLKRHKRTHTGEKPYKCNECGKAFVGQNDLKKHKRKHTGEKPYEYNECGKAFVGQNSLKRHERIHTGEKPYECNECGKAFVGQSNLKGHERIHGGEKPYECNECGKGFVCNDRLQTHKAIHTGVKP"
misc_feature 778..2016 /gene="LOC103690914" /note="FOG: Zn-finger [General function prediction only]; Region: COG5048" /db_xref="CDD:227381" misc_feature 790..843 /gene="LOC103690914" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 886..936 /gene="LOC103690914" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 961..1020 /gene="LOC103690914" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1042..1104 /gene="LOC103690914" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(1042..1044,1051..1053,1090..1092,1102..1104) /gene="LOC103690914" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:275368" misc_feature 1126..1188 /gene="LOC103690914" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(1126..1128,1135..1137,1174..1176,1186..1188) /gene="LOC103690914" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:275368" misc_feature order(1141..1143,1147..1149,1153..1155,1159..1164, 1171..1176,1183..1185,1225..1227,1231..1233,1243..1248, 1255..1260,1267..1269,1309..1311,1315..1317,1321..1323, 1327..1332,1339..1344,1351..1353) /gene="LOC103690914" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 1210..1272 /gene="LOC103690914" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1294..1356 /gene="LOC103690914" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1378..1440 /gene="LOC103690914" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(1378..1380,1387..1389,1426..1428,1438..1440) /gene="LOC103690914" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:275368" misc_feature order(1393..1395,1399..1401,1405..1407,1411..1416, 1423..1428,1435..1437,1477..1479,1483..1485,1495..1500, 1507..1512,1519..1521,1561..1563,1567..1569,1573..1575, 1579..1584,1591..1596,1603..1605) /gene="LOC103690914" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 1462..1524 /gene="LOC103690914" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1546..1608 /gene="LOC103690914" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1630..1692 /gene="LOC103690914" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1714..1776 /gene="LOC103690914" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(1714..1716,1723..1725,1762..1764,1774..1776) /gene="LOC103690914" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:275368" misc_feature 1798..1860 /gene="LOC103690914" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1882..1944 /gene="LOC103690914" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(1882..1884,1891..1893,1930..1932,1942..1944) /gene="LOC103690914" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:275368" misc_feature order(1897..1899,1903..1905,1909..1911,1915..1920, 1927..1932,1939..1941,1981..1983,1987..1989,1999..2004, 2011..2016,2023..2025,2065..2067,2071..2073,2077..2079, 2083..2088,2095..2100,2107..2109) /gene="LOC103690914" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 1966..2028 /gene="LOC103690914" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 2002..2076 /gene="LOC103690914" /note="Zinc-finger double domain; Region: zf-H2C2_2; pfam13465" /db_xref="CDD:433230" misc_feature 2050..2112 /gene="LOC103690914" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 2134..2196 /gene="LOC103690914" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" ORIGIN
cgttgtgtgattctattcattataatctaattatattgtttctctggaaaatgaaagaccttcacctacaatttgatcttctgaaaatttactatgtcatgagtttcttgaggttttgatagtttgggaaacagttttagtgtcctcttctgaaggcttgcctctcctcatttcttggcaaatctgtgttttccagttgttgcaatcatcaatttttgggtttttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtttgtttgttggtttttgctaagtgaatgattgatgtccttaagacatttgattttaggctttttaaaatttctgatatattattgcctttttgtcctagttagcttcagttgtgaacagtttagagcctacaatcatctgagggcctctcacttgagggcatgccctcatcaaaatgtctggatgctgtatcagtgagagattgtgttgtgatgattgatgtaggaaggctctacactgaaggtggcaggatccctaagcaagtgggcctgggctgggtaagagagctgggatgcattgacctatgatgatgtacatgtgaacttcactcgagaagaatgggctttgctggatccttcacagaagagtctctacaaagatgtgatgcaggagacctacaggaacctcactgctataggttacaattgggaagaccatagtattgaagaacattgtcaaagtttcagaagacatggaaggcatgaaagatgtcatactggagagaaaccatctgaaaatactcagtgtggtaaagcctttgcacaacatagtcgtctccaaagacataaaaacacacatactggagagaaactctgtgaatgtaagccacatgataaagcctttacatacgattctcagcttcaaactcttgaaaggattcatagtggagaaaaaccctacaaatataatcaatgtggtaaagcctttgaacgtcgttgtaatcttggaaggcataaactaatacatactggaagaaaatcctacaaatgcaatcagtgtggtaaagccttttcacaaaacagtcatctccaaacacataaaagcacacatactagagaggaactctataaatgtaagcaatgcggtaaagcctttacatgccataatgaacttcaaagtcataaaaggattcatactggagagaaatcctacgaatgcaatcagtgtggtaaagcctttaaatctcataggtatctccaagtacataaagcaatacatactggagagaagccctatgtatgtgatcaatgtggtaaagcctttgcacgactcagtcatctcaaaacgcatggaataacacatagtggaaagaagccttgtaagtgtgatcaatgtggtaaagcctttgcatctcatagttatctccaagtacataaaagaatacatactggagagaagccctatgtatgtgatcggtgtggtaaagcctttgcatctcatagttatctccaagtacataaaagaatacatactggagagaagccctatgtatgtgattggtgtggtaaagcctttgcatctcatagttatctccaagtacataaaagaatacatactggagagaagccctatgtatgtgatcggtgtgataaagcctttgcatatcatagttatctccaagtacataaaagaatacatactggagagaagctctatgaatgtgatcaatgtggtaaagcctttgcatctcatagttatctccaagtacataaaaaaatacatactggagagaagccctatgtatgtgatcaatgtggtaaagactttgtagttcagagtgatcttaaaagacataaaagaacacatactggagagaaaccttacaaatgtaatgaatgtggtaaggcctttgtaggtcagaatgatcttaaaaaacataaaagaaaacatactggcgagaaaccttatgaatataatgaatgtggtaaagcctttgtaggtcagaatagccttaaaaggcatgaaagaattcatactggagagaaaccttatgaatgtaatgaatgtggtaaagcctttgtaggtcagagtaaccttaaagggcatgaaagaattcatggtggagagaaaccttatgaatgtaatgaatgtggtaaaggctttgtatgtaacgatagactccaaacacataaagcaatacatactggagtgaaaccttaagaatgtaagcaatatggtaaagcctttgtaggtcagaatgaccttaaaaggcatgaaagaattcatactggagagaaaccttacaaatgtaatgaatgtggtaaagcctttgtatgtaatgctagtctccgaaaaca
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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