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2024-03-29 20:54:46, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_039098333            2351 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus zinc finger protein 431-like
            (LOC103690914), transcript variant X3, mRNA.
ACCESSION   XM_039098333
VERSION     XM_039098333.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2351
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /country="USA: Wisconsin, Milwaukee, Medical College of
                     Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2351
                     /gene="LOC103690914"
                     /note="zinc finger protein 431-like; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1 long
                     SRA read, 5 Proteins, and 74% coverage of the annotated
                     genomic feature by RNAseq alignments, including 9 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:103690914"
                     /db_xref="RGD:9213653"
     CDS             658..2214
                     /gene="LOC103690914"
                     /codon_start=1
                     /product="zinc finger protein 431-like isoform X3"
                     /protein_id="XP_038954261.1"
                     /db_xref="GeneID:103690914"
                     /db_xref="RGD:9213653"
                     /translation="
MQETYRNLTAIGYNWEDHSIEEHCQSFRRHGRHERCHTGEKPSENTQCGKAFAQHSRLQRHKNTHTGEKLCECKPHDKAFTYDSQLQTLERIHSGEKPYKYNQCGKAFERRCNLGRHKLIHTGRKSYKCNQCGKAFSQNSHLQTHKSTHTREELYKCKQCGKAFTCHNELQSHKRIHTGEKSYECNQCGKAFKSHRYLQVHKAIHTGEKPYVCDQCGKAFARLSHLKTHGITHSGKKPCKCDQCGKAFASHSYLQVHKRIHTGEKPYVCDRCGKAFASHSYLQVHKRIHTGEKPYVCDWCGKAFASHSYLQVHKRIHTGEKPYVCDRCDKAFAYHSYLQVHKRIHTGEKLYECDQCGKAFASHSYLQVHKKIHTGEKPYVCDQCGKDFVVQSDLKRHKRTHTGEKPYKCNECGKAFVGQNDLKKHKRKHTGEKPYEYNECGKAFVGQNSLKRHERIHTGEKPYECNECGKAFVGQSNLKGHERIHGGEKPYECNECGKGFVCNDRLQTHKAIHTGVKP"
     misc_feature    778..2016
                     /gene="LOC103690914"
                     /note="FOG: Zn-finger [General function prediction only];
                     Region: COG5048"
                     /db_xref="CDD:227381"
     misc_feature    790..843
                     /gene="LOC103690914"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    886..936
                     /gene="LOC103690914"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    961..1020
                     /gene="LOC103690914"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1042..1104
                     /gene="LOC103690914"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1042..1044,1051..1053,1090..1092,1102..1104)
                     /gene="LOC103690914"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1126..1188
                     /gene="LOC103690914"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1126..1128,1135..1137,1174..1176,1186..1188)
                     /gene="LOC103690914"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    order(1141..1143,1147..1149,1153..1155,1159..1164,
                     1171..1176,1183..1185,1225..1227,1231..1233,1243..1248,
                     1255..1260,1267..1269,1309..1311,1315..1317,1321..1323,
                     1327..1332,1339..1344,1351..1353)
                     /gene="LOC103690914"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1210..1272
                     /gene="LOC103690914"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1294..1356
                     /gene="LOC103690914"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1378..1440
                     /gene="LOC103690914"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1378..1380,1387..1389,1426..1428,1438..1440)
                     /gene="LOC103690914"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    order(1393..1395,1399..1401,1405..1407,1411..1416,
                     1423..1428,1435..1437,1477..1479,1483..1485,1495..1500,
                     1507..1512,1519..1521,1561..1563,1567..1569,1573..1575,
                     1579..1584,1591..1596,1603..1605)
                     /gene="LOC103690914"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1462..1524
                     /gene="LOC103690914"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1546..1608
                     /gene="LOC103690914"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1630..1692
                     /gene="LOC103690914"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1714..1776
                     /gene="LOC103690914"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1714..1716,1723..1725,1762..1764,1774..1776)
                     /gene="LOC103690914"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1798..1860
                     /gene="LOC103690914"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1882..1944
                     /gene="LOC103690914"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1882..1884,1891..1893,1930..1932,1942..1944)
                     /gene="LOC103690914"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    order(1897..1899,1903..1905,1909..1911,1915..1920,
                     1927..1932,1939..1941,1981..1983,1987..1989,1999..2004,
                     2011..2016,2023..2025,2065..2067,2071..2073,2077..2079,
                     2083..2088,2095..2100,2107..2109)
                     /gene="LOC103690914"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1966..2028
                     /gene="LOC103690914"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    2002..2076
                     /gene="LOC103690914"
                     /note="Zinc-finger double domain; Region: zf-H2C2_2;
                     pfam13465"
                     /db_xref="CDD:433230"
     misc_feature    2050..2112
                     /gene="LOC103690914"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    2134..2196
                     /gene="LOC103690914"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
ORIGIN      
cgttgtgtgattctattcattataatctaattatattgtttctctggaaaatgaaagaccttcacctacaatttgatcttctgaaaatttactatgtcatgagtttcttgaggttttgatagtttgggaaacagttttagtgtcctcttctgaaggcttgcctctcctcatttcttggcaaatctgtgttttccagttgttgcaatcatcaatttttgggtttttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtttgtttgttggtttttgctaagtgaatgattgatgtccttaagacatttgattttaggctttttaaaatttctgatatattattgcctttttgtcctagttagcttcagttgtgaacagtttagagcctacaatcatctgagggcctctcacttgagggcatgccctcatcaaaatgtctggatgctgtatcagtgagagattgtgttgtgatgattgatgtaggaaggctctacactgaaggtggcaggatccctaagcaagtgggcctgggctgggtaagagagctgggatgcattgacctatgatgatgtacatgtgaacttcactcgagaagaatgggctttgctggatccttcacagaagagtctctacaaagatgtgatgcaggagacctacaggaacctcactgctataggttacaattgggaagaccatagtattgaagaacattgtcaaagtttcagaagacatggaaggcatgaaagatgtcatactggagagaaaccatctgaaaatactcagtgtggtaaagcctttgcacaacatagtcgtctccaaagacataaaaacacacatactggagagaaactctgtgaatgtaagccacatgataaagcctttacatacgattctcagcttcaaactcttgaaaggattcatagtggagaaaaaccctacaaatataatcaatgtggtaaagcctttgaacgtcgttgtaatcttggaaggcataaactaatacatactggaagaaaatcctacaaatgcaatcagtgtggtaaagccttttcacaaaacagtcatctccaaacacataaaagcacacatactagagaggaactctataaatgtaagcaatgcggtaaagcctttacatgccataatgaacttcaaagtcataaaaggattcatactggagagaaatcctacgaatgcaatcagtgtggtaaagcctttaaatctcataggtatctccaagtacataaagcaatacatactggagagaagccctatgtatgtgatcaatgtggtaaagcctttgcacgactcagtcatctcaaaacgcatggaataacacatagtggaaagaagccttgtaagtgtgatcaatgtggtaaagcctttgcatctcatagttatctccaagtacataaaagaatacatactggagagaagccctatgtatgtgatcggtgtggtaaagcctttgcatctcatagttatctccaagtacataaaagaatacatactggagagaagccctatgtatgtgattggtgtggtaaagcctttgcatctcatagttatctccaagtacataaaagaatacatactggagagaagccctatgtatgtgatcggtgtgataaagcctttgcatatcatagttatctccaagtacataaaagaatacatactggagagaagctctatgaatgtgatcaatgtggtaaagcctttgcatctcatagttatctccaagtacataaaaaaatacatactggagagaagccctatgtatgtgatcaatgtggtaaagactttgtagttcagagtgatcttaaaagacataaaagaacacatactggagagaaaccttacaaatgtaatgaatgtggtaaggcctttgtaggtcagaatgatcttaaaaaacataaaagaaaacatactggcgagaaaccttatgaatataatgaatgtggtaaagcctttgtaggtcagaatagccttaaaaggcatgaaagaattcatactggagagaaaccttatgaatgtaatgaatgtggtaaagcctttgtaggtcagagtaaccttaaagggcatgaaagaattcatggtggagagaaaccttatgaatgtaatgaatgtggtaaaggctttgtatgtaacgatagactccaaacacataaagcaatacatactggagtgaaaccttaagaatgtaagcaatatggtaaagcctttgtaggtcagaatgaccttaaaaggcatgaaagaattcatactggagagaaaccttacaaatgtaatgaatgtggtaaagcctttgtatgtaatgctagtctccgaaaaca
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]