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Previous release (v1)
2024-04-26 08:41:50, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_039098299 4050 bp mRNA linear ROD 11-JUN-2023
DEFINITION PREDICTED: Rattus norvegicus sperm motility kinase X-like
(LOC103693496), transcript variant X6, mRNA.
ACCESSION XM_039098299
VERSION XM_039098299.1
DBLINK BioProject: PRJNA677964
KEYWORDS RefSeq.
SOURCE Rattus norvegicus (Norway rat)
ORGANISM Rattus norvegicus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Rattus.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NC_051336.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Status :: Updated annotation
Annotation Name :: GCF_015227675.2-RS_2023_06
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 10.1
Annotation Method :: Best-placed RefSeq; Gnomon;
cmsearch; tRNAscan-SE
Features Annotated :: Gene; mRNA; CDS; ncRNA
Annotation Date :: 06/06/2023
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..4050
/organism="Rattus norvegicus"
/mol_type="mRNA"
/strain="BN/NHsdMcwi"
/db_xref="taxon:10116"
/chromosome="1"
/sex="male"
/tissue_type="kidney"
/country="USA: Wisconsin, Milwaukee, Medical College of
Wisconsin"
/collection_date="2019-03-08"
/collected_by="Rebecca Schilling"
gene 1..4050
/gene="LOC103693496"
/note="sperm motility kinase X-like; Derived by automated
computational analysis using gene prediction method:
Gnomon. Supporting evidence includes similarity to: 2
Proteins, and 92% coverage of the annotated genomic
feature by RNAseq alignments, including 3 samples with
support for all annotated introns"
/db_xref="GeneID:103693496"
/db_xref="RGD:9090555"
CDS 2189..3913
/gene="LOC103693496"
/codon_start=1
/product="zinc finger protein 431-like isoform X3"
/protein_id="XP_038954227.1"
/db_xref="GeneID:103693496"
/db_xref="RGD:9090555"
/translation="
MQETYRNLTAIGYNWEDHTIEEHCQSFRRHGRHERCHTGEKPSENTQCGKAFAQHSHLQRHKSTHTGEKLYECKPRDKAFTYDSQLQTLERIHTGEKPYKCNQCGKAFERRCTLGRHKLIHTGRKSYKCNQCGKAFARHSHLKTHGITHTGEKPYECDQCGKAFAYHSYLQVHKRIHTGEKPYECNQCGKAFVGQNDLKRHERIHTGEKPYKCNECDKGFGHHRNFRMHKMMHAGEKPYKCNQCGKAFSQNSHLQTHKSTHTGEKPYKCDQCGKAFTSHSYLQVHKRIHTGEKLCECEQCGKAFASHSYLKVHKRIHTGENLYECNQCGKTFASHSYLQVHKRIHTGEKLYECDQCGKAFASHSYLQVHKRIHTGEKLYECDQCGKAFASHSPLQVHKRIHTGEKPYVCDQCGKDFVVQSDLKRHKRTHTGEKPYKCNECGKAFVGQNDLKKHKRKHTGEKPYKCNECGKAFVWNGSLRTHKVIHSGEKPYKCNECGKAFACNTSLRTHKAIHTGVKPFKCKHCGKAFVGQNDLKRHERIHTGEKLYKCNECGKAFVFDSSLRKYKAVHTGVKP"
misc_feature <2285..2791
/gene="LOC103693496"
/note="FOG: Zn-finger [General function prediction only];
Region: COG5048"
/db_xref="CDD:227381"
misc_feature 2324..2467
/gene="LOC103693496"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2489..2551
/gene="LOC103693496"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(2489..2491,2498..2500,2537..2539,2549..2551)
/gene="LOC103693496"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature 2561..3868
/gene="LOC103693496"
/note="FOG: Zn-finger [General function prediction only];
Region: COG5048"
/db_xref="CDD:227381"
misc_feature 2573..2635
/gene="LOC103693496"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(2573..2575,2582..2584,2621..2623,2633..2635)
/gene="LOC103693496"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature order(2588..2590,2594..2596,2600..2602,2606..2611,
2618..2623,2630..2632,2672..2674,2678..2680,2690..2695,
2702..2707,2714..2716,2756..2758,2762..2764,2768..2770,
2774..2779,2786..2791,2798..2800)
/gene="LOC103693496"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature 2657..2719
/gene="LOC103693496"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2741..2803
/gene="LOC103693496"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2825..2887
/gene="LOC103693496"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(2825..2827,2834..2836,2873..2875,2885..2887)
/gene="LOC103693496"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature 2909..2971
/gene="LOC103693496"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(2909..2911,2918..2920,2957..2959,2969..2971)
/gene="LOC103693496"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature order(2924..2926,2930..2932,2936..2938,2942..2947,
2954..2959,2966..2968,3008..3010,3014..3016,3026..3031,
3038..3043,3050..3052,3092..3094,3098..3100,3104..3106,
3110..3115,3122..3127,3134..3136)
/gene="LOC103693496"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature 2993..3055
/gene="LOC103693496"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 3077..3139
/gene="LOC103693496"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 3161..3223
/gene="LOC103693496"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(3161..3163,3170..3172,3209..3211,3221..3223)
/gene="LOC103693496"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature order(3176..3178,3182..3184,3188..3190,3194..3199,
3206..3211,3218..3220,3260..3262,3266..3268,3278..3283,
3290..3295,3302..3304,3344..3346,3350..3352,3356..3358,
3362..3367,3374..3379,3386..3388)
/gene="LOC103693496"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature 3245..3307
/gene="LOC103693496"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 3329..3391
/gene="LOC103693496"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 3413..3475
/gene="LOC103693496"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(3413..3415,3422..3424,3461..3463,3473..3475)
/gene="LOC103693496"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature order(3428..3430,3434..3436,3440..3442,3446..3451,
3458..3463,3470..3472,3512..3514,3518..3520,3530..3535,
3542..3547,3554..3556,3596..3598,3602..3604,3608..3610,
3614..3619,3626..3631,3638..3640)
/gene="LOC103693496"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature 3497..3559
/gene="LOC103693496"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 3581..3643
/gene="LOC103693496"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 3665..3727
/gene="LOC103693496"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 3749..3811
/gene="LOC103693496"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 3833..3895
/gene="LOC103693496"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
ORIGIN
ggccttgggctatgggcctaacaggaaaaaaaaacaatggatcaatggacaatattggagacaaacatttgagtgtaagcagccctctactgcccaactgaggaagaatcttggaaacagaaagccagaagaaccagtgggctctgcccagccaccattggtccatttttgctccgacatcacaaagaagcatcgtaggacatcatagatacctgttcacttacagatctgcctgagactgtctcctgtacctacagtactgaagttggcatttgtttgaaaaactactagagtccgatgctgctggaagattctactggaacttccaggagcttttaaacattgacatagtgcatttatctccactttggtcatcattgaactattgatggtcaattccagaagaaatcccaccatccacaaaatcatgatgtgcctcatgattagtgaaatgaggcatgtttattacctccttcctgtgtatttctgctttgaagttttgaagaggaccagaagccagagagtaggaatgtacaggctctttcaacaattttatggtaaatataatccccgtatcagcatctgactgaaacattctaagaccccaagtatatcaatgtgtccaatcctggtttcaaatggtggaggtaaatttaatatttaggggaatgcaccgttcccttgttttagaattagaacctctacaacgggaatctgggacatgtatattagtaggacgggagcaattataagtcaaacaacacagtgtattaggtgataaaattcttaagaacaggagaaaggggccaggcaagaaagctagagggtggcccattgagagctggtggaacaacgagatcaggtgataaatagcattcagtcacacaactaaacaaatgaggaagctttcttgggacaaaaaggccagtgcaaaaagcagcgcaagctttgtgcctgtgatacagaaaggcaagcacatacacctcttgcacactcacacctgtatacaccttattgattctgtgagactggtgtccagccagctctaagatctgtctgtctccctcatactccacgatactgaggttacagacacatgggcaccacgccttatttgcaggtgggttctgggcatttgaactcaggtcctcatgcttgcacaaaagtcatttcaccactgagccatctcttctgtccctctaatttgttgaccttagacaaaagcgtggcagcttaaaacaaaggttttgcataacacatttttacactagcaggctgtcaagatttttccagccttttgattatctaataggtagagaaaatgaagctgaccaagtctcctaagtggtaacgtagtataataataataataataataataataataataataataataataataatataataagggtgctgcttactgccttgttcactgtggcctgcttagcctgcttttctatagcgcaagggacccccagcccagcgatggccccacaatggtctgggccctcccacatcaatggctgatgaagaaaatgccttacaggtttgcctgcagcccagtcttacagaacattgttaaattgtggttctctcctctgagatgactccagtttgtgtcaaattgacataaaactagccagaacatgaatgttgaccaaaaaaaaattctgaagaataaactgatggtggaaatctgatttcttaacttccaatcataagtactaaatttttcatttttaattccgtattctttggacctaagcctgggagtctttcaagaagggatttataatatcttttagtagcttagtgttacactgagccacataaaattaatgtttttgagagttagaggcagcttaatatgcataatgtaaggtttatcctatcaccaaagtacaggtgacctggtctacattgaacaattgttgtacatggaaggctctgtgtaagacttaagatggtgttggaatattataaagacagaatcaggcatgaggagttcatggcgatgagagtgagtgacaagccactcgggtctcctgtctgagagttgagctgcttcctcacagatccgcgtacagaggatgcattgacctatgatgatgtacatgtgaacttcactcaagaagaatgggctttgctggatccttcacagaagagtctttacaaagatgtgatgcaggagacctataggaacctcactgctataggttacaattgggaagaccatactattgaagaacattgtcaaagtttcagaagacatggaaggcatgaaagatgtcatactggagagaagccctctgaaaatactcagtgtggtaaagcctttgcacaacatagtcatctccaaagacataagagcacacatactggagagaaactctatgaatgtaagccacgtgataaagcctttacatacgattctcagcttcaaactcttgaaaggattcatactggagaaaaaccctacaaatgtaatcaatgtggtaaagcctttgaacgtcgttgtactcttggaaggcataaactaatacatactggaagaaaatcctacaaatgcaatcagtgtggtaaagcctttgcacgacacagtcatctcaaaacgcatggaataacacatactggagagaaaccttacgaatgtgatcaatgtggtaaagcctttgcatatcatagttatctccaagtacataaaagaatacatactggagagaagccctatgaatgtaatcaatgtggtaaagcctttgtaggtcagaatgatcttaaaaggcatgaaagaattcatactggagagaaaccctacaaatgtaatgaatgtgataaaggctttggacatcaccgaaattttcgaatgcataaaatgatgcatgctggagaaaaaccctacaaatgcaatcaatgtggtaaagccttttcacaaaacagtcatctccaaacacataaaagcacacatactggagagaaaccttacaagtgtgatcaatgtggtaaagcctttacatctcatagttatctccaagtacataaaagaatacatactggagagaagctctgtgaatgtgagcaatgtggtaaagcctttgcatctcatagttatctcaaagtacataaaagaatacatactggagagaatctctatgaatgtaatcaatgtggtaaaacctttgcatctcatagttatctccaagtacataaaagaatacatactggagagaagctctatgaatgtgatcaatgtggtaaagcctttgcatctcatagttatctccaagttcataaaagaatacatactggagagaagctctatgaatgtgatcaatgtggtaaagcctttgcatctcatagtcctctccaagtacataaaagaatacatactggagagaagccctatgtatgtgatcaatgtggtaaagactttgtagttcagagtgatcttaaaagacataaaagaacacatactggtgagaaaccttacaaatgtaatgaatgtggtaaggcctttgtaggtcagaatgatcttaaaaaacataaaagaaaacatactggagagaaaccttacaaatgtaatgaatgtggtaaagcctttgtatggaatggtagtctccgaacacataaagtaatacatagtggagagaaaccttacaaatgtaatgaatgtggtaaagcctttgcatgtaacactagtctccgaacacataaagcaatacatactggagtgaaacctttcaaatgtaagcactgtggtaaagcctttgtaggtcagaatgaccttaaaaggcatgaaagaattcatactggagagaaactttacaaatgtaatgaatgtggtaaagcctttgtatttgattctagtctccgaaaatataaagcagtacatactggagtgaaaccttaagaatgtaagcaatgtggtaaagcctttgtatgtcagaattaccttaaaaagcatgaaagaattcatactggagagaaactttacaaatgtaatgaatgtggtaaagcctttgtatttgattctagtctccgaaaaca
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]