2024-03-28 22:43:37, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_039098282 3096 bp mRNA linear ROD 11-JUN-2023 DEFINITION PREDICTED: Rattus norvegicus sperm motility kinase X-like (LOC103693496), transcript variant X1, mRNA. ACCESSION XM_039098282 VERSION XM_039098282.1 DBLINK BioProject: PRJNA677964 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_051336.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_015227675.2-RS_2023_06 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 06/06/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3096 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN/NHsdMcwi" /db_xref="taxon:10116" /chromosome="1" /sex="male" /tissue_type="kidney" /country="USA: Wisconsin, Milwaukee, Medical College of Wisconsin" /collection_date="2019-03-08" /collected_by="Rebecca Schilling" gene 1..3096 /gene="LOC103693496" /note="sperm motility kinase X-like; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 89% coverage of the annotated genomic feature by RNAseq alignments, including 224 samples with support for all annotated introns" /db_xref="GeneID:103693496" /db_xref="RGD:9090555" CDS 1107..2960 /gene="LOC103693496" /codon_start=1 /product="zinc finger protein 431-like isoform X1" /protein_id="XP_038954210.1" /db_xref="GeneID:103693496" /db_xref="RGD:9090555" /translation="
MVTVVQMYGMFQDALTYDDVHVNFTQEEWALLDPSQKSLYKDVMQETYRNLTAIGYNWEDHTIEEHCQSFRRHGRHERCHTGEKPSENTQCGKAFAQHSHLQRHKSTHTGEKLYECKPRDKAFTYDSQLQTLERIHTGEKPYKCNQCGKAFERRCTLGRHKLIHTGRKSYKCNQCGKAFARHSHLKTHGITHTGEKPYECDQCGKAFAYHSYLQVHKRIHTGEKPYECNQCGKAFVGQNDLKRHERIHTGEKPYKCNECDKGFGHHRNFRMHKMMHAGEKPYKCNQCGKAFSQNSHLQTHKSTHTGEKPYKCDQCGKAFTSHSYLQVHKRIHTGEKLCECEQCGKAFASHSYLKVHKRIHTGENLYECNQCGKTFASHSYLQVHKRIHTGEKLYECDQCGKAFASHSYLQVHKRIHTGEKLYECDQCGKAFASHSPLQVHKRIHTGEKPYVCDQCGKDFVVQSDLKRHKRTHTGEKPYKCNECGKAFVGQNDLKKHKRKHTGEKPYKCNECGKAFVWNGSLRTHKVIHSGEKPYKCNECGKAFACNTSLRTHKAIHTGVKPFKCKHCGKAFVGQNDLKRHERIHTGEKLYKCNECGKAFVFDSSLRKYKAVHTGVKP"
misc_feature 1149..1271 /gene="LOC103693496" /note="KRAB box; Region: KRAB; pfam01352" /db_xref="CDD:426216" misc_feature <1332..1838 /gene="LOC103693496" /note="FOG: Zn-finger [General function prediction only]; Region: COG5048" /db_xref="CDD:227381" misc_feature 1371..1514 /gene="LOC103693496" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1536..1598 /gene="LOC103693496" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(1536..1538,1545..1547,1584..1586,1596..1598) /gene="LOC103693496" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:275368" misc_feature 1608..2915 /gene="LOC103693496" /note="FOG: Zn-finger [General function prediction only]; Region: COG5048" /db_xref="CDD:227381" misc_feature 1620..1682 /gene="LOC103693496" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(1620..1622,1629..1631,1668..1670,1680..1682) /gene="LOC103693496" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:275368" misc_feature order(1635..1637,1641..1643,1647..1649,1653..1658, 1665..1670,1677..1679,1719..1721,1725..1727,1737..1742, 1749..1754,1761..1763,1803..1805,1809..1811,1815..1817, 1821..1826,1833..1838,1845..1847) /gene="LOC103693496" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 1704..1766 /gene="LOC103693496" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1788..1850 /gene="LOC103693496" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1872..1934 /gene="LOC103693496" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(1872..1874,1881..1883,1920..1922,1932..1934) /gene="LOC103693496" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:275368" misc_feature 1956..2018 /gene="LOC103693496" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(1956..1958,1965..1967,2004..2006,2016..2018) /gene="LOC103693496" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:275368" misc_feature order(1971..1973,1977..1979,1983..1985,1989..1994, 2001..2006,2013..2015,2055..2057,2061..2063,2073..2078, 2085..2090,2097..2099,2139..2141,2145..2147,2151..2153, 2157..2162,2169..2174,2181..2183) /gene="LOC103693496" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 2040..2102 /gene="LOC103693496" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 2124..2186 /gene="LOC103693496" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 2208..2270 /gene="LOC103693496" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(2208..2210,2217..2219,2256..2258,2268..2270) /gene="LOC103693496" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:275368" misc_feature order(2223..2225,2229..2231,2235..2237,2241..2246, 2253..2258,2265..2267,2307..2309,2313..2315,2325..2330, 2337..2342,2349..2351,2391..2393,2397..2399,2403..2405, 2409..2414,2421..2426,2433..2435) /gene="LOC103693496" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 2292..2354 /gene="LOC103693496" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 2376..2438 /gene="LOC103693496" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 2460..2522 /gene="LOC103693496" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(2460..2462,2469..2471,2508..2510,2520..2522) /gene="LOC103693496" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:275368" misc_feature order(2475..2477,2481..2483,2487..2489,2493..2498, 2505..2510,2517..2519,2559..2561,2565..2567,2577..2582, 2589..2594,2601..2603,2643..2645,2649..2651,2655..2657, 2661..2666,2673..2678,2685..2687) /gene="LOC103693496" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 2544..2606 /gene="LOC103693496" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 2628..2690 /gene="LOC103693496" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 2712..2774 /gene="LOC103693496" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 2796..2858 /gene="LOC103693496" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 2880..2942 /gene="LOC103693496" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" ORIGIN
aggacaaagtttctcaatgtagccctggctgtcctgaaagtagctgtttagaacgtggggcctcagatgtaaatggtccacctgcctctggctccagagtgccaggattaaatgtgggccaacatgccccgctttctctttgtttgtttgtttgtttgtttgtttgttcatttttatgttattggctgatggttggactatgggttttggcacatgtcaagcatatgctgctgtgttgatcttcatccatgttatgaattttgaaatttgacagagagcatgttctgtttctcaggatggcatgtattcatgacattcatacatatcattcatgacattcatatgcacatcatgtatgcctaatccccatagtagtcagaaaatggcttcagaattacggaacttggagtaatcaatagttgtgaagctcccttctaactactggcaattgaggccaattatttttaagaccagcaagagctcttcactgctgagccagctcctgtcctatgttgcttatttaggatcaacatttacattgccagtattttcagctatctgtttgtatctgtttcaacattcatccccttttagtaagatctcattactgttacagttaaaactgggacacctcaagattatggaagaagaatacagaagtgcagtgaatgtaattctttgtaggaactctagtaaaaacctctgagtcctttctatctttcttgtttgtttgtttgattgatttttcataggggagacagggtcttaatatgtacctctggctgtcctggatagacctcagatatacctgcctctgcctcctgagtgcttgaattaaagacatgagcctatatgctcacttgatatttttttgcagttagtaattgttcatacaatttctctgtgtgctcaatactgcgcccccctccattaattagcatttctcttgcaaggctatatcctacccaaagagcaaagatatgacagaggtgaaccttattactcagttttcttctaagatgatttcgtaattacattagaacatctgggtcaagaaataagtgggttaagcacaagaagcatacatttacagtgatatcggtatcatggttactgttgtacaaatgtatgggatgtttcaggatgcattgacctatgatgatgtacatgtgaacttcactcaagaagaatgggctttgctggatccttcacagaagagtctttacaaagatgtgatgcaggagacctataggaacctcactgctataggttacaattgggaagaccatactattgaagaacattgtcaaagtttcagaagacatggaaggcatgaaagatgtcatactggagagaagccctctgaaaatactcagtgtggtaaagcctttgcacaacatagtcatctccaaagacataagagcacacatactggagagaaactctatgaatgtaagccacgtgataaagcctttacatacgattctcagcttcaaactcttgaaaggattcatactggagaaaaaccctacaaatgtaatcaatgtggtaaagcctttgaacgtcgttgtactcttggaaggcataaactaatacatactggaagaaaatcctacaaatgcaatcagtgtggtaaagcctttgcacgacacagtcatctcaaaacgcatggaataacacatactggagagaaaccttacgaatgtgatcaatgtggtaaagcctttgcatatcatagttatctccaagtacataaaagaatacatactggagagaagccctatgaatgtaatcaatgtggtaaagcctttgtaggtcagaatgatcttaaaaggcatgaaagaattcatactggagagaaaccctacaaatgtaatgaatgtgataaaggctttggacatcaccgaaattttcgaatgcataaaatgatgcatgctggagaaaaaccctacaaatgcaatcaatgtggtaaagccttttcacaaaacagtcatctccaaacacataaaagcacacatactggagagaaaccttacaagtgtgatcaatgtggtaaagcctttacatctcatagttatctccaagtacataaaagaatacatactggagagaagctctgtgaatgtgagcaatgtggtaaagcctttgcatctcatagttatctcaaagtacataaaagaatacatactggagagaatctctatgaatgtaatcaatgtggtaaaacctttgcatctcatagttatctccaagtacataaaagaatacatactggagagaagctctatgaatgtgatcaatgtggtaaagcctttgcatctcatagttatctccaagttcataaaagaatacatactggagagaagctctatgaatgtgatcaatgtggtaaagcctttgcatctcatagtcctctccaagtacataaaagaatacatactggagagaagccctatgtatgtgatcaatgtggtaaagactttgtagttcagagtgatcttaaaagacataaaagaacacatactggtgagaaaccttacaaatgtaatgaatgtggtaaggcctttgtaggtcagaatgatcttaaaaaacataaaagaaaacatactggagagaaaccttacaaatgtaatgaatgtggtaaagcctttgtatggaatggtagtctccgaacacataaagtaatacatagtggagagaaaccttacaaatgtaatgaatgtggtaaagcctttgcatgtaacactagtctccgaacacataaagcaatacatactggagtgaaacctttcaaatgtaagcactgtggtaaagcctttgtaggtcagaatgaccttaaaaggcatgaaagaattcatactggagagaaactttacaaatgtaatgaatgtggtaaagcctttgtatttgattctagtctccgaaaatataaagcagtacatactggagtgaaaccttaagaatgtaagcaatgtggtaaagcctttgtatgtcagaattaccttaaaaagcatgaaagaattcatactggagagaaactttacaaatgtaatgaatgtggtaaagcctttgtatttgattctagtctccgaaaac
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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