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Previous release (v1)
2024-04-20 19:43:56, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_039084926 2700 bp mRNA linear ROD 11-JUN-2023
DEFINITION PREDICTED: Rattus norvegicus zinc finger protein 431-like
(LOC120094816), transcript variant X3, mRNA.
ACCESSION XM_039084926
VERSION XM_039084926.1
DBLINK BioProject: PRJNA677964
KEYWORDS RefSeq.
SOURCE Rattus norvegicus (Norway rat)
ORGANISM Rattus norvegicus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Rattus.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NC_051344.1) annotated using gene prediction method: Gnomon,
supported by EST evidence.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Status :: Updated annotation
Annotation Name :: GCF_015227675.2-RS_2023_06
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 10.1
Annotation Method :: Best-placed RefSeq; Gnomon;
cmsearch; tRNAscan-SE
Features Annotated :: Gene; mRNA; CDS; ncRNA
Annotation Date :: 06/06/2023
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..2700
/organism="Rattus norvegicus"
/mol_type="mRNA"
/strain="BN/NHsdMcwi"
/db_xref="taxon:10116"
/chromosome="9"
/sex="male"
/tissue_type="kidney"
/country="USA: Wisconsin, Milwaukee, Medical College of
Wisconsin"
/collection_date="2019-03-08"
/collected_by="Rebecca Schilling"
gene 1..2700
/gene="LOC120094816"
/note="zinc finger protein 431-like; Derived by automated
computational analysis using gene prediction method:
Gnomon. Supporting evidence includes similarity to: 1 EST,
1 long SRA read, 4 Proteins, and 81% coverage of the
annotated genomic feature by RNAseq alignments, including
14 samples with support for all annotated introns"
/db_xref="GeneID:120094816"
/db_xref="RGD:40991655"
CDS 543..2342
/gene="LOC120094816"
/codon_start=1
/product="zinc finger protein 431-like isoform X2"
/protein_id="XP_038940854.1"
/db_xref="GeneID:120094816"
/db_xref="RGD:40991655"
/translation="
MQETYRNLTAIGYNWEDHTIEEHCQSFRRHGRHERCHTGEKPSENTQCCKAFAQHSPLQRHKSTHTGEKLYECKSRDKAFTYYSQLQTLERIHAGEKPYKCNQCGKAFTSHSSLQVHERIHTGEKPYKCNQCGKAFAQLSHLKTHGITHSGEKPYECEQCGKAFTSHSYLQVYKRIHTGEKLYECDQCGKAFVLHNALKRHKRIHTGEKLYECDQCGKAFAYHSYLQVHKRIHTGEKPYKCNQCGKAFAQLSHLKTHGITHTGEKSYECNQCGKAFTSHSYLQVHKRIHTGEKLYECDQCGKAFVLHSTLKRHKRIHTGEKLYECDQCGKAFTSHSYLQVHKRIHTGEKLYECDQCGKAFVLHSALKRHKRIHTGEKLYECDQCGKAFAYHSYLQVHKRIHTGEKPYVCDRCDKAFAYQSYLQVHKRIHTGEKPYVCDRCDKAFAYHSYLQVHKRIHTRENLYECDQCGKAFTSHSSLQVHKRIHTGEKPYVCDQCGKDFVVPSDLKRHKRTHTEEKLYKCNECGKAFVCNASLRKHKATHTGVKPFDCKQCGKAFVGQNDLRRHERIHTGEKPYECNECGKAFSQSSQLQLHKRTHTY"
misc_feature 678..737
/gene="LOC120094816"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 759..821
/gene="LOC120094816"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(759..761,768..770,807..809,819..821)
/gene="LOC120094816"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature <771..1319
/gene="LOC120094816"
/note="FOG: Zn-finger [General function prediction only];
Region: COG5048"
/db_xref="CDD:227381"
misc_feature 843..905
/gene="LOC120094816"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(843..845,852..854,891..893,903..905)
/gene="LOC120094816"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature order(858..860,864..866,870..872,876..881,888..893,
900..902,942..944,948..950,960..965,972..977,984..986,
1026..1028,1032..1034,1038..1040,1044..1049,1056..1061,
1068..1070)
/gene="LOC120094816"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature 927..989
/gene="LOC120094816"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1011..1073
/gene="LOC120094816"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1083..2306
/gene="LOC120094816"
/note="FOG: Zn-finger [General function prediction only];
Region: COG5048"
/db_xref="CDD:227381"
misc_feature 1095..1157
/gene="LOC120094816"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(1095..1097,1104..1106,1143..1145,1155..1157)
/gene="LOC120094816"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature 1179..1241
/gene="LOC120094816"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(1179..1181,1188..1190,1227..1229,1239..1241)
/gene="LOC120094816"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature order(1194..1196,1200..1202,1206..1208,1212..1217,
1224..1229,1236..1238,1278..1280,1284..1286,1296..1301,
1308..1313,1320..1322,1362..1364,1368..1370,1374..1376,
1380..1385,1392..1397,1404..1406)
/gene="LOC120094816"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature 1263..1325
/gene="LOC120094816"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1347..1409
/gene="LOC120094816"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1431..1493
/gene="LOC120094816"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1515..1577
/gene="LOC120094816"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1599..1661
/gene="LOC120094816"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1683..1745
/gene="LOC120094816"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1767..1829
/gene="LOC120094816"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1851..1913
/gene="LOC120094816"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1935..1997
/gene="LOC120094816"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(1935..1937,1944..1946,1983..1985,1995..1997)
/gene="LOC120094816"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature 2019..2081
/gene="LOC120094816"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2103..2165
/gene="LOC120094816"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(2103..2105,2112..2114,2151..2153,2163..2165)
/gene="LOC120094816"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature order(2118..2120,2124..2126,2130..2132,2136..2141,
2148..2153,2160..2162,2202..2204,2208..2210,2220..2225,
2232..2237,2244..2246,2286..2288,2292..2294,2298..2300,
2304..2309,2316..2321,2328..2330)
/gene="LOC120094816"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature 2187..2249
/gene="LOC120094816"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2271..2333
/gene="LOC120094816"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
ORIGIN
gagggtgagagaggcagagaaacagaaagacaaagagtacaaaatttctggatgatataggaagagcttctggggaagggaaaactcggcccctgcgctggaaagttcaaggtacaaggtggggtatgccagacaggccctgttacacgtggggactgaggagtgctgggagaacctggaggcccagacagctttggtgtgttaaatatatgaaggtcagctgattgtagggtctaaatcccaacagccacaaaacaaaactcttgtttcctcaaatctctctttaattgttaatatcttgggcaccctcccacttgtgggacagatcaataactccactgcaagttgagtatgggggttatgcacgctgtatacctcgattcctggaggcagaagggaaagagactactgaatgttgtaagctgagagcaggttgaagtgaggacctggatgtattgacctatgatgatgtacatgtgaacttcactcgagaagaatgggctttgctggatccttcacagaagagtctctacaaagatgtgatgcaggagacctacaggaacctcactgctataggttacaattgggaagaccatactattgaagaacattgtcaaagtttcagaagacatggaaggcatgaaagatgtcatactggagagaaaccctctgaaaatactcagtgttgtaaagcctttgcacaacatagtcctctccaaagacataaaagcacacatactggagagaaactctatgaatgtaagtcacgtgataaagcctttacatactattctcagcttcaaactcttgaaagaattcatgctggagaaaaaccctacaaatgcaatcaatgtggtaaagcctttacatctcatagttctctccaagtacatgaaagaatacatactggagagaaaccctacaaatgcaatcaatgtggtaaagcctttgcacaactcagtcatctcaaaacgcatggaataacacattctggagagaaaccttacgaatgtgaacagtgtggtaaagcctttacatctcatagttatctccaagtatataaaagaatacatactggagagaagctctatgaatgtgatcaatgtggtaaagcctttgtacttcacaatgctcttaaaagacataaaagaatacatactggagagaagctctatgaatgtgatcaatgtggtaaagcctttgcatatcatagttatctccaagtacataaaagaatacatactggagagaaaccctacaaatgcaatcaatgtggtaaagcctttgcacaactcagtcatctcaaaacgcatggaataacacatactggagagaaatcctacgaatgcaatcagtgtggtaaagcctttacatctcatagttatctccaagtacataaaagaatacatactggagagaagctctatgaatgtgatcaatgtggtaaagcctttgtacttcacagtactcttaaaagacataaaagaatacatactggagagaagctctatgaatgtgatcaatgtggtaaagcctttacatctcatagttatctccaagtacataaaagaatacatactggagagaagctctatgaatgtgatcaatgtggtaaagcctttgtacttcacagtgctcttaaaagacataaaagaatacatactggagagaagctctatgaatgtgatcaatgtggtaaagcctttgcatatcatagttatctccaagtacataaaagaatacatactggagagaagccctatgtatgtgatcggtgtgataaagcctttgcatatcagagttatctccaagtacataaaagaatacatactggagagaagccctatgtatgtgatcggtgtgataaagcctttgcatatcatagttatctccaagtacataaaagaatacatactcgagagaatctctatgaatgtgatcaatgtggtaaagcctttacatctcatagttctctccaagtacataaaagaatacatactggagagaagccctatgtatgtgatcaatgtggtaaagacttcgtagttccgagtgatcttaaaagacataaaagaacacatactgaagagaaactttacaaatgtaatgaatgtggtaaggcctttgtctgtaatgctagtctccgaaaacataaagcaacacatactggagtgaaacctttcgattgtaagcaatgtggtaaagcctttgtaggtcagaatgaccttagaaggcatgaaagaattcatactggagagaaaccttacgaatgtaatgaatgtggtaaagccttttcacaatcaagccaactccaactacataaaagaacacatacatactaaagagtaaccctatgaatgtaaccaatgtagtaaagcctttactgtgatcttcaaaggtatggtggtttaaatatacttggcccatggcaagtggcagtgttaggaggtatggcctttttggagtagatgtgacctttgaggaagtatgtcaatgtggaggggggatgggctttcagacctcatgcttaaactctacccagggcagaagagtcttctggctgccttctgatcaagatgtagaactctatcctccagcaccatatctgcttggacactgacatttcttccaccttgatcatagactgaacctctgaatctgtatacctcccctccccacaattaaatgtcctttctaaga
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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