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Previous release (v1)
2024-04-18 21:01:31, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_039084925 2277 bp mRNA linear ROD 11-JUN-2023
DEFINITION PREDICTED: Rattus norvegicus zinc finger protein 431-like
(LOC120094816), transcript variant X2, mRNA.
ACCESSION XM_039084925
VERSION XM_039084925.1
DBLINK BioProject: PRJNA677964
KEYWORDS RefSeq.
SOURCE Rattus norvegicus (Norway rat)
ORGANISM Rattus norvegicus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Rattus.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NC_051344.1) annotated using gene prediction method: Gnomon,
supported by EST evidence.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Status :: Updated annotation
Annotation Name :: GCF_015227675.2-RS_2023_06
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 10.1
Annotation Method :: Best-placed RefSeq; Gnomon;
cmsearch; tRNAscan-SE
Features Annotated :: Gene; mRNA; CDS; ncRNA
Annotation Date :: 06/06/2023
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..2277
/organism="Rattus norvegicus"
/mol_type="mRNA"
/strain="BN/NHsdMcwi"
/db_xref="taxon:10116"
/chromosome="9"
/sex="male"
/tissue_type="kidney"
/country="USA: Wisconsin, Milwaukee, Medical College of
Wisconsin"
/collection_date="2019-03-08"
/collected_by="Rebecca Schilling"
gene 1..2277
/gene="LOC120094816"
/note="zinc finger protein 431-like; Derived by automated
computational analysis using gene prediction method:
Gnomon. Supporting evidence includes similarity to: 1 EST,
1 long SRA read, 4 Proteins, and 77% coverage of the
annotated genomic feature by RNAseq alignments, including
14 samples with support for all annotated introns"
/db_xref="GeneID:120094816"
/db_xref="RGD:40991655"
CDS 120..1919
/gene="LOC120094816"
/codon_start=1
/product="zinc finger protein 431-like isoform X2"
/protein_id="XP_038940853.1"
/db_xref="GeneID:120094816"
/db_xref="RGD:40991655"
/translation="
MQETYRNLTAIGYNWEDHTIEEHCQSFRRHGRHERCHTGEKPSENTQCCKAFAQHSPLQRHKSTHTGEKLYECKSRDKAFTYYSQLQTLERIHAGEKPYKCNQCGKAFTSHSSLQVHERIHTGEKPYKCNQCGKAFAQLSHLKTHGITHSGEKPYECEQCGKAFTSHSYLQVYKRIHTGEKLYECDQCGKAFVLHNALKRHKRIHTGEKLYECDQCGKAFAYHSYLQVHKRIHTGEKPYKCNQCGKAFAQLSHLKTHGITHTGEKSYECNQCGKAFTSHSYLQVHKRIHTGEKLYECDQCGKAFVLHSTLKRHKRIHTGEKLYECDQCGKAFTSHSYLQVHKRIHTGEKLYECDQCGKAFVLHSALKRHKRIHTGEKLYECDQCGKAFAYHSYLQVHKRIHTGEKPYVCDRCDKAFAYQSYLQVHKRIHTGEKPYVCDRCDKAFAYHSYLQVHKRIHTRENLYECDQCGKAFTSHSSLQVHKRIHTGEKPYVCDQCGKDFVVPSDLKRHKRTHTEEKLYKCNECGKAFVCNASLRKHKATHTGVKPFDCKQCGKAFVGQNDLRRHERIHTGEKPYECNECGKAFSQSSQLQLHKRTHTY"
misc_feature 255..314
/gene="LOC120094816"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 336..398
/gene="LOC120094816"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(336..338,345..347,384..386,396..398)
/gene="LOC120094816"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature <348..896
/gene="LOC120094816"
/note="FOG: Zn-finger [General function prediction only];
Region: COG5048"
/db_xref="CDD:227381"
misc_feature 420..482
/gene="LOC120094816"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(420..422,429..431,468..470,480..482)
/gene="LOC120094816"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature order(435..437,441..443,447..449,453..458,465..470,
477..479,519..521,525..527,537..542,549..554,561..563,
603..605,609..611,615..617,621..626,633..638,645..647)
/gene="LOC120094816"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature 504..566
/gene="LOC120094816"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 588..650
/gene="LOC120094816"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 660..1883
/gene="LOC120094816"
/note="FOG: Zn-finger [General function prediction only];
Region: COG5048"
/db_xref="CDD:227381"
misc_feature 672..734
/gene="LOC120094816"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(672..674,681..683,720..722,732..734)
/gene="LOC120094816"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature 756..818
/gene="LOC120094816"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(756..758,765..767,804..806,816..818)
/gene="LOC120094816"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature order(771..773,777..779,783..785,789..794,801..806,
813..815,855..857,861..863,873..878,885..890,897..899,
939..941,945..947,951..953,957..962,969..974,981..983)
/gene="LOC120094816"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature 840..902
/gene="LOC120094816"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 924..986
/gene="LOC120094816"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1008..1070
/gene="LOC120094816"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1092..1154
/gene="LOC120094816"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1176..1238
/gene="LOC120094816"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1260..1322
/gene="LOC120094816"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1344..1406
/gene="LOC120094816"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1428..1490
/gene="LOC120094816"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1512..1574
/gene="LOC120094816"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(1512..1514,1521..1523,1560..1562,1572..1574)
/gene="LOC120094816"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature 1596..1658
/gene="LOC120094816"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1680..1742
/gene="LOC120094816"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(1680..1682,1689..1691,1728..1730,1740..1742)
/gene="LOC120094816"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature order(1695..1697,1701..1703,1707..1709,1713..1718,
1725..1730,1737..1739,1779..1781,1785..1787,1797..1802,
1809..1814,1821..1823,1863..1865,1869..1871,1875..1877,
1881..1886,1893..1898,1905..1907)
/gene="LOC120094816"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature 1764..1826
/gene="LOC120094816"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1848..1910
/gene="LOC120094816"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
ORIGIN
agggaggagcaagcggctgggcagtggatgtattgacctatgatgatgtacatgtgaacttcactcgagaagaatgggctttgctggatccttcacagaagagtctctacaaagatgtgatgcaggagacctacaggaacctcactgctataggttacaattgggaagaccatactattgaagaacattgtcaaagtttcagaagacatggaaggcatgaaagatgtcatactggagagaaaccctctgaaaatactcagtgttgtaaagcctttgcacaacatagtcctctccaaagacataaaagcacacatactggagagaaactctatgaatgtaagtcacgtgataaagcctttacatactattctcagcttcaaactcttgaaagaattcatgctggagaaaaaccctacaaatgcaatcaatgtggtaaagcctttacatctcatagttctctccaagtacatgaaagaatacatactggagagaaaccctacaaatgcaatcaatgtggtaaagcctttgcacaactcagtcatctcaaaacgcatggaataacacattctggagagaaaccttacgaatgtgaacagtgtggtaaagcctttacatctcatagttatctccaagtatataaaagaatacatactggagagaagctctatgaatgtgatcaatgtggtaaagcctttgtacttcacaatgctcttaaaagacataaaagaatacatactggagagaagctctatgaatgtgatcaatgtggtaaagcctttgcatatcatagttatctccaagtacataaaagaatacatactggagagaaaccctacaaatgcaatcaatgtggtaaagcctttgcacaactcagtcatctcaaaacgcatggaataacacatactggagagaaatcctacgaatgcaatcagtgtggtaaagcctttacatctcatagttatctccaagtacataaaagaatacatactggagagaagctctatgaatgtgatcaatgtggtaaagcctttgtacttcacagtactcttaaaagacataaaagaatacatactggagagaagctctatgaatgtgatcaatgtggtaaagcctttacatctcatagttatctccaagtacataaaagaatacatactggagagaagctctatgaatgtgatcaatgtggtaaagcctttgtacttcacagtgctcttaaaagacataaaagaatacatactggagagaagctctatgaatgtgatcaatgtggtaaagcctttgcatatcatagttatctccaagtacataaaagaatacatactggagagaagccctatgtatgtgatcggtgtgataaagcctttgcatatcagagttatctccaagtacataaaagaatacatactggagagaagccctatgtatgtgatcggtgtgataaagcctttgcatatcatagttatctccaagtacataaaagaatacatactcgagagaatctctatgaatgtgatcaatgtggtaaagcctttacatctcatagttctctccaagtacataaaagaatacatactggagagaagccctatgtatgtgatcaatgtggtaaagacttcgtagttccgagtgatcttaaaagacataaaagaacacatactgaagagaaactttacaaatgtaatgaatgtggtaaggcctttgtctgtaatgctagtctccgaaaacataaagcaacacatactggagtgaaacctttcgattgtaagcaatgtggtaaagcctttgtaggtcagaatgaccttagaaggcatgaaagaattcatactggagagaaaccttacgaatgtaatgaatgtggtaaagccttttcacaatcaagccaactccaactacataaaagaacacatacatactaaagagtaaccctatgaatgtaaccaatgtagtaaagcctttactgtgatcttcaaaggtatggtggtttaaatatacttggcccatggcaagtggcagtgttaggaggtatggcctttttggagtagatgtgacctttgaggaagtatgtcaatgtggaggggggatgggctttcagacctcatgcttaaactctacccagggcagaagagtcttctggctgccttctgatcaagatgtagaactctatcctccagcaccatatctgcttggacactgacatttcttccaccttgatcatagactgaacctctgaatctgtatacctcccctccccacaattaaatgtcctttctaaga
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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