2024-03-29 11:09:13, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_039084915 4609 bp mRNA linear ROD 11-JUN-2023 DEFINITION PREDICTED: Rattus norvegicus sperm motility kinase X-like (LOC100911813), transcript variant X3, mRNA. ACCESSION XM_039084915 VERSION XM_039084915.1 DBLINK BioProject: PRJNA677964 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_051344.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_015227675.2-RS_2023_06 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 06/06/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4609 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN/NHsdMcwi" /db_xref="taxon:10116" /chromosome="9" /sex="male" /tissue_type="kidney" /country="USA: Wisconsin, Milwaukee, Medical College of Wisconsin" /collection_date="2019-03-08" /collected_by="Rebecca Schilling" gene 1..4609 /gene="LOC100911813" /note="sperm motility kinase X-like; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 ESTs, 3 long SRA reads, 4 Proteins, and 92% coverage of the annotated genomic feature by RNAseq alignments, including 72 samples with support for all annotated introns" /db_xref="GeneID:100911813" /db_xref="RGD:6490489" CDS 1063..3198 /gene="LOC100911813" /codon_start=1 /product="zinc finger protein 431 isoform X2" /protein_id="XP_038940843.1" /db_xref="GeneID:100911813" /db_xref="RGD:6490489" /translation="
MLETYRNLTAIGYNWEDHTIDEHCQSFRRHGRHERCHPGEKPSENTQCGKAFAQQSHLQRHKSTHTGEKLYECKPRDKAFTYDSQLQTLERIHTGEKPYKCNQCGKAFERRCNLGRHKLIHTGRKSYKYNQCGKDFAGLSHLKTHGITHTGGKPYKCDQCGKAFAYHSSLQVHKRIHTGEKPYVCDQCGKAFAQLGHLQVHGITHTGEKPYKCDQCGKAFAHHSYLQVHKRIHTGEKLCECDQCGKAFLSHSYLQVHKRIHTGENLYECDQCGKAFTSHSYLQVHKRIHTGEKLYECDQCGKAFTSHSYLQVHKRIHTGEKPYVCDQCGKAFARLSYLKTHGITHTGEKPYKCDQCGKAFEHRCNLGSHKLIHTGEKPYKCDQCGKAFTSHSYLQVHKRIHTGEKLCECDQCGKAFSSHSYLQVHKRIHTGENLYECDQCGKAFASHSYLQVHKRIHTGENLYECDQCSKAFASHSYLQVHKRIHTGEKPYVCDWCNKAFAYHSYLQVHKRIHTGEKPYVCDQCGKDFVVPSELKRHKRIHTGEKPYKCNECGKAFVGQNDLKKHRRTHTGEKPYKCNECGKAFVFNFNLRAHKVIHTGEKPYKCSECGKAFACNTSLRTHKAIHTGVKPFECKQCGKAFACNTSLQTHRAIHTGVKPFECKQCGKAFVGQNDLKRHERIHTGEKPYECNECGKAFSQSSQLQLHKRTHTY"
misc_feature <1183..1671 /gene="LOC100911813" /note="FOG: Zn-finger [General function prediction only]; Region: COG5048" /db_xref="CDD:227381" misc_feature 1198..1257 /gene="LOC100911813" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1279..1341 /gene="LOC100911813" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1363..1425 /gene="LOC100911813" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(1363..1365,1372..1374,1411..1413,1423..1425) /gene="LOC100911813" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:275368" misc_feature 1450..1509 /gene="LOC100911813" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1531..1593 /gene="LOC100911813" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(1531..1533,1540..1542,1579..1581,1591..1593) /gene="LOC100911813" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:275368" misc_feature order(1546..1548,1552..1554,1558..1560,1564..1569, 1576..1581,1588..1590,1630..1632,1636..1638,1648..1653, 1660..1665,1672..1674,1714..1716,1720..1722,1726..1728, 1732..1737,1744..1749,1756..1758) /gene="LOC100911813" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 1615..1677 /gene="LOC100911813" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1687..2931 /gene="LOC100911813" /note="FOG: Zn-finger [General function prediction only]; Region: COG5048" /db_xref="CDD:227381" misc_feature 1699..1761 /gene="LOC100911813" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1783..1845 /gene="LOC100911813" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(1783..1785,1792..1794,1831..1833,1843..1845) /gene="LOC100911813" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:275368" misc_feature 1867..1929 /gene="LOC100911813" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(1867..1869,1876..1878,1915..1917,1927..1929) /gene="LOC100911813" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:275368" misc_feature order(1882..1884,1888..1890,1894..1896,1900..1905, 1912..1917,1924..1926,1966..1968,1972..1974,1984..1989, 1996..2001,2008..2010,2050..2052,2056..2058,2062..2064, 2068..2073,2080..2085,2092..2094) /gene="LOC100911813" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 1951..2013 /gene="LOC100911813" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 2035..2097 /gene="LOC100911813" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 2119..2181 /gene="LOC100911813" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 2203..2265 /gene="LOC100911813" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 2287..2349 /gene="LOC100911813" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 2371..2433 /gene="LOC100911813" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(2371..2373,2380..2382,2419..2421,2431..2433) /gene="LOC100911813" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:275368" misc_feature 2455..2517 /gene="LOC100911813" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(2455..2457,2464..2466,2503..2505,2515..2517) /gene="LOC100911813" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:275368" misc_feature order(2470..2472,2476..2478,2482..2484,2488..2493, 2500..2505,2512..2514,2554..2556,2560..2562,2572..2577, 2584..2589,2596..2598,2638..2640,2644..2646,2650..2652, 2656..2661,2668..2673,2680..2682) /gene="LOC100911813" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 2539..2601 /gene="LOC100911813" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 2623..2685 /gene="LOC100911813" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 2707..2769 /gene="LOC100911813" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 2791..2853 /gene="LOC100911813" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 2875..2937 /gene="LOC100911813" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 2911..2988 /gene="LOC100911813" /note="Zinc-finger double domain; Region: zf-H2C2_2; pfam13465" /db_xref="CDD:433230" misc_feature 2959..3021 /gene="LOC100911813" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(2959..2961,2968..2970,3007..3009,3019..3021) /gene="LOC100911813" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:275368" misc_feature order(2974..2976,2980..2982,2986..2988,2992..2997, 3004..3009,3016..3018,3058..3060,3064..3066,3076..3081, 3088..3093,3100..3102,3142..3144,3148..3150,3154..3156, 3160..3165,3172..3177,3184..3186) /gene="LOC100911813" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 3031..>3195 /gene="LOC100911813" /note="FOG: Zn-finger [General function prediction only]; Region: COG5048" /db_xref="CDD:227381" misc_feature 3043..3105 /gene="LOC100911813" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 3079..3156 /gene="LOC100911813" /note="Zinc-finger double domain; Region: zf-H2C2_2; pfam13465" /db_xref="CDD:433230" misc_feature 3127..3189 /gene="LOC100911813" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" ORIGIN
gggtgggggagggagagaggcagagaaacagaaacacaaagagtacaaaatttctggattatataggaagagcttctggggaaaggaaaactcggtccctgcactggaaagttcaaggtacaaggtggggtatcccagacaggccctgatatgggtggggactgaggagtgctgggagaacctggaggcccagacagctttggtgtgttaaatatatgaaggtcagctgattgtagggtctgaatcccaacagccacaaaacaaaactcttgtttcctcaaatttctctttaattgttaatatcttgggcacccttccacttgtgggacagattaaaaactccactgcaagttgagcatgggggttatgcaagctgcataccttgattccaggaggaggaagggtaagagcctactgagtgttgtgagctgagttcaggttgaagtgaggaccgggtgagctcagggtcactgcccacgaaagggaggagcaagcggctgggcagtggtaggtggtgtggtgggtccttccgggggctgggcggggagacagatgagaacgctattggaggacaggcacaagtgctactgaaatgcaaatccctgtagatctggaaaaggtctggcttcaggcttgatgcttgggccggcaactgtgtacctacactgtacgttcagcccctcctacccttacggaggtgctcaagtcactcaaactactggccaatcggagtcttcaatggacctgccaatcaaaagggaaggcgggcttttccgggtgcctaggtgtaggattcggttagtagttaagcagtcttaactggtcctggctgctgtgctctctgtcctgccgttggattctctgaggcatgttcaggcaagctccaaagttgcgacatggtggcatgtattcatgacattaatactgcctggctatattgcctgagctttctgagtcattggactgcaggatgcattgacctatgatgatgtacatgtgaacttcactcgagaagaatgggctttgctggatccttcacagaagagtctctacaaagatgtgatgctggagacctacaggaacctcactgctataggttacaattgggaagaccatactattgatgagcattgtcaaagtttcagaagacatggaaggcatgaaagatgtcatcctggagagaaaccctctgaaaatactcagtgtggtaaagcctttgcacaacagagtcatctccaaagacataaaagcacacatactggagagaaactctatgaatgtaagccacgtgataaagcctttacatacgattctcagcttcaaactcttgaaagaattcatactggagaaaaaccctacaaatgtaatcaatgtggtaaagcctttgaacgtcgttgtaatcttggaaggcataaactaatacatactggaagaaaatcctacaaatacaatcaatgtggtaaagactttgcaggactcagtcatctcaaaacacatggaataacacatactggagggaaaccttacaaatgtgatcaatgtggtaaagcctttgcatatcatagttctctccaagtacataaaagaatacatactggagagaagccctatgtatgtgaccaatgtggtaaagcctttgcacaactcggtcatctccaagttcatggaataacacatactggagagaaaccttacaagtgtgatcaatgtggtaaagcctttgcacatcatagttatctccaagtacataaaagaatacatactggagagaagctctgtgaatgtgatcaatgtggtaaagcctttttatctcatagttatctccaagtacataaaagaatacatactggagagaatctctatgaatgtgatcaatgtggtaaagcctttacatctcatagttatctccaagtacataaaagaatacatactggagagaagctctatgaatgtgatcaatgtggtaaagcctttacatctcatagttatctccaagtacataaaagaatacatactggagagaagccctatgtatgtgatcaatgtggtaaagcctttgctcgactcagttatctcaaaacgcatggaataacacatactggagagaaaccttacaagtgtgatcaatgtggtaaagcctttgaacatcgttgtaatcttggaagtcataaattaatacatactggagagaaaccttacaaatgtgatcaatgtggtaaagcctttacatctcatagttatctccaagtacataaaagaatacatactggagagaagctctgtgaatgtgatcaatgtggtaaagccttttcatctcatagttatctccaagtacataaaagaatacatactggagagaatctctatgaatgtgatcaatgtggtaaagcctttgcatctcatagttatctccaagtacataaaagaatacatactggagagaatctctatgaatgtgatcagtgtagtaaagcctttgcatctcatagttatctccaagtacataaaagaatacacactggagagaagccctatgtatgtgattggtgtaataaagcctttgcatatcatagttatctccaagtacataaaagaatacatactggagagaagccctatgtatgtgatcaatgtggtaaagactttgtagttccgagcgagcttaaaagacataaaagaatacatactggagagaaaccttacaaatgtaatgaatgtggtaaggcctttgtaggtcagaatgatcttaaaaaacatagaagaacacatactggagagaaaccttacaaatgtaatgaatgtggtaaggcctttgtattcaattttaatctccgagcacataaagtaatacatactggagagaaaccttacaaatgtagtgaatgtggtaaagcctttgcatgtaacactagtctccgaacacataaagcaatacatactggagtgaaacctttcgaatgtaagcaatgtggtaaagcctttgcatgtaacactagtctccaaacacatagagcaatacatactggagtgaaacctttcgaatgtaagcaatgtggtaaagcctttgtaggtcagaatgaccttaaaaggcatgaaagaattcatactggagagaaaccttacgaatgtaatgaatgtggtaaagccttttcacaatcaagccaactccaactacataaaagaacacatacatactaaagagtaaccctatgaatgtaaccaatgcagtaaagcctttactgtgatattcaaaggtatggtggttaaaatatacttggcccatggcaagtggcattgttatgaggtatggcccttttggagtagatgtggcctttgaggatgtgtgtcactgtgggggagggggtggtggtggttggctttgagaccccatgcttaaactctacccagggcagaagagtcttctggctgccttctgatcaagatgtagaactctctccagcaccatgtctgcttggacactgagattccttccaccttgataatagactgaacctctgaatctgtataccctccccccaattaaatgtcctttctaagagttgccttggtcatggtattttttcacagcattaaaacccaaattaagacaaacagcataaaatataccacactagagaaaaactgtgaatgtactaaatatggtcaagcctttgcacatttgtataactctcactataacaaaagtattcatacttccattcactgaaaccctgggctctgtggcaaagtctgtgtcttgaaatctgcataaatacctaacaattcaaaaacatggtcaaagtaaatgccaggagtctattggaaacaagctgagttagaagggtagggattatgtttagggtggttgggtgtgcctttagtgctagtgaaaaagccgcgccaaaatttggggagcctctctagtcgcgggatggagttccccaggaaacgcgagtagcccgtcttgatgtaacagcaagaggtagcatttattaatgagatctcgggctgaaacgtgtgtcacgcaggagacagaggaatcgaccccaagactcgaaatttaaggctttttataggggaaggcaaggggattcagcgtggttatctgcaagggaaatgggtacaaggtctcatctgtaagcagtccgtgcgggctggagtgttctcaatgtaggagagcgtcttatctttatctgtagagcagggagttgtccgtcaggatggcccccgactcagctgagatggtggctgctagttcctggaacaatcccttgaccttgtttttaggcttgtcggggcacatctcaggcctgctctgtcctgtccccttatctgctgttcttttgcagtttttatgaagtttttattttaacttcattcccctctactttttgtgagtagttctaatcttagaactacatgatgagttcagcatctagaggctctttaccccgtacagcctgatactgttgtcttaacatgaggacatgtacagcactaatccgttccctgacaaaagttaaaaggcgattaatggggctggggatttagctcagtggtagagcgcttacctaggaagcgcaaggccctgggtttggtccccagctcc
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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