LOCUS       XM_017597752           10335 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus trinucleotide repeat containing
            adaptor 6C (Tnrc6c), transcript variant X2, mRNA.
ACCESSION   XM_017597752
VERSION     XM_017597752.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_017597752.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..10335
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /country="USA: Wisconsin, Milwaukee, Medical College of
                     Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..10335
                     /gene="Tnrc6c"
                     /note="trinucleotide repeat containing adaptor 6C; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 10 ESTs, 9 Proteins, and 99% coverage of the annotated
                     genomic feature by RNAseq alignments, including 157
                     samples with support for all annotated introns"
                     /db_xref="GeneID:303774"
                     /db_xref="RGD:1310027"
     CDS             4654..10335
                     /gene="Tnrc6c"
                     /codon_start=1
                     /product="trinucleotide repeat-containing gene 6C protein
                     isoform X2"
                     /protein_id="XP_017453241.2"
                     /db_xref="GeneID:303774"
                     /db_xref="RGD:1310027"
                     /translation="

MEEKKKKKQEDKKKKEGAQKKAADQKTKVPELTKTCSSQPQPAGTSPSTSTSTISSGSNGKRASACGQQPAASRYLPREVPPRFRQQEQKQLLKRGQPLPTGSLTSVSPAQAAGPAGASPPPLPGAGAQQHPSKLQPDLGHSGLAGHYENCHWGQHPSYRSEADCSWDKVIIDRTDQELWPSTPVTETESASECPTDTDSASNCGSENSSMATGSTQSSFPGHPKKTNGSHGTNGTLVQSPSNPSALGAGAANGNGGMARVWGVATGSSSGLAHCSVGGGDGKMDNMIGDGRSQNCWGASNSNAGINLSLNPNANPAAWPVLGHEGTVATGNPSSICSPVSAIGQSMGSQNGNPVGTLGAWGNLLPQESTEPQTSTSQNVSFSVQPQNLNTDGPNNTNPLNNSSPNPINAMQTNGLPNWGMAVGMGAIIPPHLQGLPGANGSSVSQGSGSGGEGMGSSVWGLSPGNPATGSTNCGFSQGNGGDTVNSALSAKQNGSSSAAQKEGNGGNAWDSGPPAGPGILAWGRGNGNGIGNIHSGAWGHPSRSSSNGVNGEWAKPPNQHSSSDINGKGSTGWDSASAASQTPALQPGSEHMNSWAKATSSGTTASEGSSEGSGSHNEGSTGREGAGEGRRRDKGVLDQGHIQLPRNDLDPRVLSNSGWGQTPVKQNTAWEFEESPRSERKNDNGTEAWGSVATQPSNSGGKTDGSIMNSTNTSSVSGWVSSPPAAVPANTSWGDSNNKAPSGPGVWGDSISSTAVNNAAATKSGHAWSGTVNQEDKSPTWGEPQKPKSQNWGDGQRANPAWSAGAGDWADSPSVLGHLGDGKKSGSGWDADGSRSGSGWNDATRCGTSGWASGTNAKVNPGTNWGESLKPGPQQNWAHKPQDNNVSNWGGAASVKQTGTGWIGGPLPVKQKDSSEATGWEEPSPPSIRRKMEVDDGTSAWGDPSTYNNKTVNMWDRNNPVIQSSTTAPATPTTPTLSSTTHRAETPPSHQAGTQLNRSPLLGPVSSGWGEMPNVHSKAENSWGEPSSPSTLVDNGTAAWGKPPSSGSGWDHPAEPVVPFGRASAPAAATALCKPASKSMQEGWGSGADEMNLGTSQWEDEDGDMWNNAASQESSSSCSSWGNASKKGLQKGMKTPGKQDEAWIMSRLIKQLTDMGFPREPAEEALKSNSMNLDQAMSALLEKKVDMDKRGLGMTDYNGMVTKPLGCRPPISKESSMDRPTFLDKDGGLVEEPTTSPFLPSPSLKLPLSNSALPNQALGGIASGLGMQNLNSSRQIPSGNLGVFGNSGAAQARTMQQPPVQPLNSSQPSLRAQVPQFLSPQVQAQLLQFAAKNIGLSPALLTSPINPQHMTMLNQLYQLQLAYQRLQIQQQMLQAQRNVSGPMRQQEQQVARTITNLQQQIQQHQRQLAQALLVKQPPPPPPPPHLSLHPSAGKPGMDSFPPHPQAPGLPDLQTKEQQSSPNTFAPYPLAGLNPNMNVNSIDMSSGLSVKDPSQSQSRLPQWTHPNSMGNLSSAASPLDQNPSKHGAIPGGLSIGPPGKSSIDDSYGRYDLIQNSESPASPPVAVPHSWSRAKSDSDKISNGSSISWPPEFHPGVPWKGLQNIDPENDPDVTPGSVPTGPTINTTIQDVNRYLLKSGGKLSDIKSTWSSGPASHTQASLSHELWKVPRNTTAPTRPPPGLANPKPSSTWGTSPLGWTSSYSSGSAWSTDTSGRTSSWLVLRNLTPQIDGSTLRTLCLQHGPLITFHLNLTQGNAVVRYSSKEEAAKAQKSLHMCVLGNTTILAEFAGEEEVNRFLAQGQALPPTSSWQSSSGGSQPRLGTSGSTHGLVRSDTAHWNTPCLSGKGSSELLWGGVPQYSSSLWGPPSADDTRVIGSPTPLNTLLPGDLLSGESI"

     misc_feature    7756..8085
                     /gene="Tnrc6c"
                     /note="Argonaute hook; Region: Ago_hook; pfam10427"
                     /db_xref="CDD:431279"
     misc_feature    8092..8205
                     /gene="Tnrc6c"
                     /note="UBA domain found in trinucleotide repeat-containing
                     gene 6C protein (TNRC6C) and similar proteins; Region:
                     UBA_TNR6C; cd14283"
                     /db_xref="CDD:270469"
     misc_feature    8329..9009
                     /gene="Tnrc6c"
                     /note="M domain of GW182; Region: M_domain; pfam12938"
                     /db_xref="CDD:432890"
     misc_feature    9034..9798
                     /gene="Tnrc6c"
                     /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg;
                     pfam16608"
                     /db_xref="CDD:435458"
     misc_feature    9784..10047
                     /gene="Tnrc6c"
                     /note="RNA recognition motif (RRM) found in vertebrate
                     trinucleotide repeat-containing gene 6C protein (TNRC6C);
                     Region: RRM_TNRC6C; cd12713"
                     /db_xref="CDD:410112"
ORIGIN      

attggacaacctatgagagagctcatccatggaagaagtggttctccttctctagcagccgttgaccatctgtggcccttcatttaggggtaggacctcgtggagtttcctgtatccatgttggcgtgtgtgctggtctcgttaaggtgatgatgtgaattcctgagtgctttttccctggcatgcatgactaagcagaactgtctaactgcaggtgccccagtctgctccctgagcttaggagttggggttgtccactgtcactgctctctgcatgtggccagtgtggacctctgtagtaagacctttatctattgcaagaagaagagtcttgaataaggggagaaaactagactcatttggtggggcctgaggcttatgaactgcacagatagacctgagctgcacatgctcgaaaatgcttaaaggggaaattgcagcacacactttagcagcagttttaatttttaaaaactggtgtgcatcttatgttgtcagttctagtaaggactgcttccagccaaaggagctagagctctggaaatagcagcacttgggagataaatgtacctagatcaggagttaatggtcattctcggctacatacagttcaacacagtgccagccttgatagatacatggggccctggcttttgtttgttttaaaggctgggtttttaaactttaggtgaggggagaagtgtaaaatacgatcacatgcaggaataattaaaaacttaaaaccagagatggctaatctgttctgagcactgtctgctctttagaggaacgaggttcaattaccagcacccacatgacagctcacagctgtctgttattccagctccaggagttttgacaccctcagacaggctggcaaaacactaatacacataaaataaaaaaaataaatcattaaaaaataaaagacttgaaacagcagctgagcctggtggtgcacatctttaatcctaggatttgggaggcagaagcaggtggatttccatgagcttaagcctggtctgacctacatagtgagttccaggccagccaggggactacatagtgagaccctacctcaaaggagtgaagaaaaagttccacagaaaagttaaaatgtgacctccatgtgccacatgttgttcgcctgtttgaagcaacaacagagtcaggctgtaggataaaagatcagattcctctcttgaaatctctgccctgggacctccccctctaagaaaccctttgtaaaacttgtctcctgctcagtttcctgctgcttcttgcccagtcaggggcagcttccctcctaggtctcatccagtaaatcctggtgtgaggtttgttgtgtagtgtgacttagggtatttattccttggctctcctgtgctaggatgtctctccctttagagctgtaataccttcactgaggaagcattcctccacagacctgtgagccccacttacgctggtcccacccaccattaccaaaaccacaaaaaggaaacaagccccatctccactgggacaaatcagtaagtaatacagaggaaaggggataataagtacacctcgttcattgcttttaaaagaagcatatagccaggcagcagtggtgctctgcaagttagttccactactcaggagacagagacagcgggtctttgtgagttcgaggccaacttggtccataaagctattccaggccagccagagatattagacagagatactcttacctgagacggccgggggtgatgggggaggaagaattgaagggaagaaagaaaccgcacatgaagaatgttttggtttagttcactttcaagacactcctgcttcctgggatgtgcaggtgcgcaccaccagcacccaccagcgggtcacagctgctttgttttgtggagggtggtgacccaaggccatagatgtgctggagcaagtgctttgcccccagtcctttaaagagcattcctggatccccaagaaactttccgcttacgttgcctctaagatgataccagttgacacacacgaagggagtctttcctttcctttttgtactatgagtgctttgccacgggcatgtattaggttataaaataaaagcgtgattagatgttggtcttttaaattaataatgaaaagtggcagatgtacagtaagagttagagagtaggagtgacgctgctggggcgctttgtcatgtaaacaaggagctgtaaggagctggccttagttctttaatttgctgatgaatagaattaagctgaagccattttcttcttcctgctgttgaataaatacctctgtagccagaacaaggccctacctccctacctgctttctcacattccctctctggggtaatttaaggctctccatgtgctgcagattaagaaagcctgagggcaacatgttttctttctagatgtgtgactgaaagctgcatggctgcaacatacctggtcatactcagaactgccgcagctagaattcttgcatgcaaatggctcagctatgtgtacatcgtttaccatgaaaacattcctgaagagcatctctcagatcattagatgagtagtcacttttcaaagttcataatatgtagagattcaggagtcacggaaagttttaaatactgctaaggccagagtctcgtgcacaaagatttcatccatctggttgaagcagtcttggttttggaagtttttaagcttcccaagttaattctgattggaagccacagactgagtaatcactgtttcgaaggaaaaatattcacagataacccccaccatatcaatttaaattggttttattatgatagtattttgttatgaacaatctgcctttagtttgaaattccttatatggatagttgtatgcaaaatacatggttaaatgcaaaattattaactacaaagcagcatctaggcatgggtgagtgctgcttggccaaggcttgggttacgttgttgttctagtttagctgttgatctcactggtacctgcattagtctaggtccagtagggatatggaagccttgtaaatggatctagttcattcaaggaataagtcatgataataggattaactgtaaactgggcatggtgacacatgccttttattctagtgctcaggaaacaggggcaggggcaatctttaagtctgaggccagtctagtctgtctactgaattccaggccagtacatactgagaccctgtctcagcaaacaaacaaatgaagacttaactacagaagcggcatgaaccctaagctgatgaagccccggctaagaagggaagccccactggaaagctggcgcacattcacagggcatggcacagatttgctgaatgagcaccaggaagcactttaagctaactacctgttcttcaactagagcacatgcagaatgcaagccagtcacagccagtagcccctcagcttgtgctcctattggaaaggagccctgggcgtgttgatggatggctaggtgtgtgtggactattggtgcagcagacctggagtccggtgtgtgtgtgaggaggagtcccatgagagacagttgggaggtggctagtagtagggactggaattagttcagtgctaagagtgccattggatgggatgctaggctgccagagccaaggttgcccatgctaagcctaggcctgtaaccagccagcatctgggcttcaaacccacatactaacctcacagtgccacggtaacaggtgtcaagagggtccttcctcctgcaactccccatggtgctgactgaaagaagggccagagcctgtgttactgggagagcatggagccatcaggaaagagatagtgacccctgatgcatgcacaccacttgggctagctatagcactacagcctaggtgttagctgtcttcactttttaaaacagagttcttccatgttgcatatcttgtaatagctctccagctgaacagggctctgtataaaaagataatccgtgtcagacaaacatgaagttagagcatacatgggaatcacctccacagagcctgatctgttggatgagttggatagaaatcacagatcatttctaatagggagccccagtgatggcagtctctgagacagcactaagtgtccttactctgtagaccccacacaaagccctgcactagtcgatttctccacagttgtgggcagaacaaacgagacagctaagccacttgacaaaaaagcagggcagcagctgtcatactggaggggaacctccatttctgactcctctcaaagtggctctatcatgttgatgacattgtctagatcaagactttgtgcacaaataatatccctgccctgtatcctgagtgtggagtttcaaacccagggcctcacgtacaaggctacaagcacctgagctatggcggcagcaccctcctacatacaggttagtctaggggttagcctgtgggccactctggccttaaacttgtgattctcctgcctcagcctcccagacagctggaattacagtcctgtgccctcactcctggttgcttttttacttcttcattggctttaaagtagtcatcatactaacactgcttcttaaatatttaatagggtaaaagaacaggaaacacaagaagaggaacgtttgatggaagaaaagaaaaagaaaaagcaggaagacaagaaaaagaaggaaggtgctcagaaaaaggctgctgatcaaaaaaccaaagtgccagaacttactaagacctgttcaagccagccccaacctgcgggtaccagtcccagtacttccaccagcactatttctagcggcagcaatggcaaacgtgcatctgcctgtggccagcagccagctgcatcccgttacctgcctcgggaggtgcctccacgctttcgccagcaagaacagaagcagctgttaaagagaggccagccattgcccacagggagtctgaccagtgtgagcccagcacaggctgctggacctgcaggggccagccctcctcccctccctggagctggggcacagcaacatcccagcaaactccaaccagatcttggtcacagtggattggcaggtcactatgaaaattgtcactggggacagcatccctcttacagaagtgaagcagactgcagctgggataaagtgataatagacaggactgaccaagagctgtggccgtccaccccagtaacagagactgaatctgcctcagaatgtcctaccgacactgactctgcctccaactgtggctccgagaacagtagcatggctacagggagcacccagagcagcttccccggccacccgaagaagacgaatggcagtcatggcaccaatggcacactcgtccaaagcccttctaacccgagtgcccttggggcaggagcagccaatgggaatgggggcatggccagagtgtggggtgtagccaccggctccagctctggcctggctcactgctctgttggtggtggagatgggaaaatggacaacatgattggagatgggagaagtcagaattgctggggtgcttccaactccaatgcgggcattaatctcagcctcaatcctaatgccaacccagctgcctggcctgtacttgggcatgaaggaactgtggcaacaggcaacccttccagtatttgcagtccagtcagtgccataggtcagagtatgggcagccagaatgggaacccagtgggcaccctgggtgcctggggaaacttgctgccccaagagagcacagaaccacaaacgtccacttctcagaatgtgtctttcagcgtacaacctcagaaccttaacactgatggaccaaataacactaaccccttgaataactcttcaccaaaccctatcaatgcaatgcagacaaacggactgccaaactggggcatggctgttggtatgggggccatcatcccaccccacctgcaaggccttcctggtgctaacggatcatcagtctctcaaggcagtgggagtggtggggaaggaatgggcagttctgtgtggggactgtcccctggcaaccctgccacaggaagtaccaattgtgggttcagtcaggggaatggaggagacactgtgaactcagcattaagtgctaagcagaatggatccagcagtgctgcgcagaaggaggggaatggagggaacgcctgggactcggggcctcctgcagggcctggcatcctggcctggggaaggggcaatggcaacggcattgggaatatccattcgggagcttggggccaccccagccgaagttcttctaatggtgtgaatggggagtgggcgaagcccccaaaccagcattccagtagtgacatcaatgggaaaggatcaacagggtgggacagtgccagtgctgccagccagacccctgccctgcagcctggcagtgaacacatgaactcatgggccaaagccacatcttctggaactacagcaagtgaaggaagcagtgaggggtccggcagtcacaatgaaggaagcactgggagggaaggagcaggagagggccggaggcgagacaaaggggttctagaccaagggcacatccagttgccaaggaatgatcttgacccaagagttctgtctaatagtggttggggacagactcccgtaaagcaaaacactgcctgggaatttgaagagtcccctaggtctgaaaggaaaaatgacaatgggacagaggcctggggtagtgtagctactcagccttcaaactcaggggggaagactgatgggtccatcatgaacagtacaaatacctcttcagtatcggggtgggtcagctcgccacctgccgccgtgccagcaaacacaagctggggagacagcaacaacaaagcgccaagtggcccaggagtttggggggactcaataagctctactgctgttaacaatgctgctgccaccaagagtggccatgcttggagtgggactgtaaaccaagaggacaagtcacccacctggggtgagcctcagaaacccaaatcccaaaactggggcgatggacaaagagcaaacccagcctggagtgcaggagcaggagactgggcagactcaccatctgtccttggacatctaggggatggaaagaaaagtggatctggatgggatgctgatggtagtaggtcagggtctggttggaatgatgccacgaggtgtgggaccagtggctgggccagtggcaccaatgctaaggtgaatccaggtacaaactggggggagtctctcaagcctggtccccagcagaactgggctcacaagccccaagacaacaatgtgagtaactgggggggagctgcttctgttaagcagacagggacggggtggattggggggccactgccagtcaagcagaaggacagcagtgaggcgactggctgggaggagccttccccaccctccatccgacgcaaaatggaagttgatgatggtacctcagcttggggggacccaagcacctacaacaataaaactgtaaacatgtgggacagaaacaatccagtcatccagagcagtaccacagcccctgccacccccacgacccccaccttgagcagcaccacacaccgggccgagacgccgccttcacaccaggctggcactcagctgaatcggtcaccactgctcgggccagtttcgtctggctggggagagatgcccaatgttcactccaaggctgagaactcctggggagagccatcttccccttctaccctggtcgacaatggcacggcagcctgggggaagcctcccagtagtggcagtggatgggatcatcctgctgagcccgtggtgccatttggaagagccagtgctcctgctgctgccacagccctgtgcaaaccagcttccaaatctatgcaagaaggctggggcagtggtgcggacgaaatgaacctgggcaccagccagtgggaggacgaggacggggacatgtggaacaatgctgcctcccaagaaagcagctcatcctgcagctcctggggcaatgcctcaaaaaaaggacttcagaagggcatgaagacgcccggcaagcaggatgaggcctggatcatgagccggctgatcaaacaactcacagacatgggcttcccgagagagccagctgaagaggccttgaagagcaacagtatgaaccttgaccaggccatgagtgctctgctggaaaagaaggtggacatggacaaacgtggactgggaatgaccgactacaatggaatggtcaccaaacccctcggctgccgcccaccaatctccaaagagtcttccatggaccgccccaccttccttgacaaggatggcggcctcgtggaagagcccacgacttcaccgtttttgccttccccaagcctgaagctccccctttccaacagtgcactccccaatcaggccctgggtgggattgcctcagggctgggcatgcaaaacttgaactcttctagacagatcccgagtggcaatctgggtgtgtttggcaatagcggagcagcacaagccaggaccatgcagcagccgccagtgcagcctcttaattcctcccagcccagcctccgagctcaagtgcctcagtttctatcccctcaggttcaagcacagcttttgcagtttgcagcaaaaaacattggtctcagccctgcactattaacctcgccaattaaccctcagcatatgacgatgttgaaccagctctatcagctgcagctggcataccaacgtttacaaatccagcagcagatgttacaggcccagcggaatgtttccggacccatgaggcaacaggagcagcaagttgcgcgcacaatcactaatctgcagcagcagatccagcagcaccagcgccagctggcccaggccctgcttgtaaagcagcctccacctccgccacccccgccgcacctgtctctgcacccctctgcaggcaaaccgggcatggatagcttccctcctcacccccaggctcctggcctccccgacctgcagaccaaagagcagcagtcttcacccaacacctttgctccttatcctcttgccggattgaacccaaacatgaatgtcaacagcatagacatgagcagtggtttgtctgtgaaggacccatctcagtcccagtcacgcctgcctcagtggacacatcccaattccatgggtaacttgtctagtgctgcttctcccctggaccagaatcctagcaagcatggtgctatccctggaggtctaagcatcgggcctccaggtaagtcctctattgatgactcttacggccggtacgatttaattcagaacagtgagtcaccagccagtcctccagtagctgttccccatagctggtcacgtgccaagtctgacagtgataaaatctcaaatggctccagcatcagctggcccccagagttccaccccggggtcccatggaaaggacttcagaacatcgatcctgagaatgaccctgatgtcactcctggaagtgtccctactggacccaccattaacaccaccatccaggatgtcaaccgctacctcctcaagagtggaggtaagctgtccgatattaaatcaacgtggtcctcaggcccagcttctcacacgcaagcctctctgtctcatgagctgtggaaggtacccagaaacactactgcacccaccaggccacctccaggcttagccaatcccaagccttcctctacctggggcaccagccccctcggctggaccagctcctactcctcgggttctgcatggagtactgacacctcaggaagaacaagcagctggctcgttctgcgcaatctcacaccccagatcgatggttctacactgcggacgctgtgtttgcagcatgggcctctcatcacattccacctgaacctgacccaaggcaatgctgtggtccgctacagttccaaggaggaagccgccaaggcccagaagtctctgcacatgtgtgtactgggaaacaccaccatcttggctgagtttgctggtgaagaagaagtgaaccggttcctggcccaaggccaagccctcccacccacctccagctggcagtccagcagtgggggcagccagcccaggctgggcacctcgggcagcacccatggcctagtgcgcagcgacactgcccactggaacaccccatgcctgagtggcaaaggcagcagtgagctgctgtggggtggggtcccccagtactcgagcagcctgtggggcccacccagtgctgatgataccagagtgatcggcagccccacgcctctcaacactctgctgcctggtgacctgctcagcggcgagtccatctag

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