LOCUS       XM_017592182           10456 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus hypothetical protein LOC100362814
            (LOC100362814), transcript variant X4, mRNA.
ACCESSION   XM_017592182
VERSION     XM_017592182.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_017592182.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10456
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /country="USA: Wisconsin, Milwaukee, Medical College of
                     Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..10456
                     /gene="LOC100362814"
                     /gene_synonym="RGD1310754"
                     /note="hypothetical protein LOC100362814; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 37 ESTs, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 42 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:100362814"
                     /db_xref="RGD:2323964"
     CDS             523..4767
                     /gene="LOC100362814"
                     /gene_synonym="RGD1310754"
                     /codon_start=1
                     /product="UPF0606 protein KIAA1549L homolog isoform X4"
                     /protein_id="XP_017447671.1"
                     /db_xref="GeneID:100362814"
                     /db_xref="RGD:2323964"
                     /translation="

MALQEAKPQGPSKAGPAAREPRDRPREPGLCGAGGIAARCQGVKSSGARGSEDVLPLRPLLLGLLLLAALSGNCRADSGADNLQTHVTPTSESFPLGKLLPISPTWPFLEVKSSSAADRIKNVLGQPPDNTTLTQLSQTPLPKAHRKTRAHVDFSSSLYQGSGHSASLDLAKDPTETLVQTRPEGGREAADMSVETSVSSKGELSATVAAAATTTLFLRKSSPAPLSAALTAKGTGGGGSLAKSSLTTALAKNVTNKAAPGPKVTAGTVHTAFPFTPTYMLARTAHSLSTHTAMQGASGSVSGLLSTTHLPKKPQAMHTGLPNPTRPDTPRASTPRPLTITAALTSLTASVKATRLPSLQTGNTDAAFPAVSTAMVTTGRMASNLDCQMSHKFLVKTVFFLTQRRIQSSESLKLGVTKGLTQALRKAFHQNDVSAHVDILEYSHNVTVGYYATKGRLVYLPAVVMDVLGVYGVSNVTADLKQHAPNLQSVAVLASPWKPQPAGAFQLKTVLQFVSQSDNIQSCRFAQTMEQRLQKAFQDAERKVLGTRSNLTVQIVSTSNASQAVTLVYAVGNQSSFLNGTMASSLLSQLSAELVGFYLTYPPLTIAEPLEYPNLDTSETTRDYWVITVLQGVDNSLVGLHNQSFARVMEQRLAQLFMMSQQQGRRFKRATTLGSYTVQMVKMQRVPGPKDPAELTYYTLYNGKPLLGTAAAKILSTIDSQRMALTLHHVVLLQADPVVKNPPNNLWIIAAVLAPIAVVTIIIIIITAVLCRKNKNDFKPDTMINLPQRAKPVQGFDYAKQHLGQQGADEEVIPVTQETVVLPIPVRDTPQERDTAQDGSTIKTAKSTETRKRSPSENGSVISNESGKPSSGRCSPQNGMTQQKVTKEESRKRNGTASDEEEGAGLFDSAGKAAADPFDTSSGSVQLIAIKPSALPVVHPASDRGPESSAALNGEVSKALKQKSDIEHYRNKLRLKAKRKGYYDFPPVDAGKGLTERKKMYEKAPKEMEHALEPDPELCAPFAESKNRQQMKNSVYRSRQSLNSPSPGETEMDLLVTRERPRRGIRNSGYDTEPEIIEETNVDRVHEPRGYGRARQMKGHSETSTLSSQPSIDEVRQQMHMLLEEAFSLASAGHAGQSRHQEAYGSTQHLPYSEVVTSAPGTMTRPRAGVQWVPTYRPEMYQYSLPRPAYRFSQLPEMVMGSPPPPVPPRTGPVAVASLRRSTSDIGSKTRMAESTGPEATQLHDSASFAQVSRGPVSVTQLDQSALNYSGNTVPAVFAIPAANRPGFTGYFIPTPPPSYRSQAWMSYAGDSELPSQWADSVPLPGYIEAYPRSRYQQSSPSRLPRQYSQPTNLHPSLEQAPVPSAAASQQSLTENEPPDTPLTNISTAALVKAIREEVAKLAKKQTDMFEFQV"

     misc_feature    2011..3924
                     /gene="LOC100362814"
                     /gene_synonym="RGD1310754"
                     /note="Domain of unknown function (DUF3827); Region:
                     DUF3827; pfam12877"
                     /db_xref="CDD:432847"
ORIGIN      

ggtttcgcgcggggatgcgcgcgcgcgcgcctgcctcgcctccctagcccgctccggtgctacgtgctttctttgtcaatgaggcgccgctctgagctgcagtagcattcgcggctggagccggagtccagcgatccagtgaaccgacagggacagagacccgggcgcaggggcggcggcgggcggcacgctgcacgagccaggtccgcgggtccccacgtctcgtagcctcgcgctcgaggtgcagcatccggccccggggaggggaccagggcgccgcccgtcccaccctcgccataccgtgggaacccccatgcaaccccggtacccgcgcgcctgaaaccccggctccgttgagcccgcctccgaccgaggcaggacgagcgagcagctcgcacctcctgcctccctccgactcccgggccatggcccgagatgcccggtgaggaacggtgcgcggagggctgggctcccgggcgcggcgtggaaagaggcagcggcctggatgtatgaacagtccctatggctctgcaggaggcgaagccccagggcccgagcaaagctgggccggcggcgcgggagcccagggatcggccccgggagccagggctctgcggggcgggcgggatcgccgcgcgctgccagggcgtgaagagctccggggcccgcggctccgaggatgtgctgccgctgcggccgctgctgctgggactcttgctgctggctgccctctccgggaactgccgggccgactcgggggcagacaatctacagacacatgtcactccgacctcagagtcctttccccttgggaaattgttaccaatttcaccaacatggcctttcttggaagtcaagtcttcctcagcagcggacagaatcaagaatgtgctgggacagcctcctgacaacacaaccttgacacagctatcccagacacctctgcccaaggcacaccgtaagaccagggctcatgtggacttctcctcatccctttaccaaggaagtggacatagcgcctccctggatcttgccaaggaccccactgagactctggtccaaacaaggcctgaagggggaagagaagcagcggacatgtcagtggaaacctcagtgtcctccaagggagaactgtcagccaccgtagcagcagccgccaccaccacactgtttctgaggaaatcaagtccagcgccactgtctgcagcccttactgctaagggcactggcggtggcggcagcttagccaagagcagtctgaccactgctctagctaaaaatgtcaccaacaaggcagcaccaggcccaaaggtgacagcagggacagtccacacagccttcccattcacaccaacctacatgcttgcccggacagcacacagcctgagcactcacacagccatgcaaggggcctcaggctctgtgtcaggcctgttgtccacaacacacctccccaagaagccccaagccatgcacactggcctccctaatcctaccaggccagacacacccagagcatccacaccccgcccactgacaatcacagccgcgctgacgtcccttacagcatccgtaaaggccactagactgccttctttgcagacaggaaacacagatgctgcttttccggctgtgtctactgcaatggtcacaactggcaggatggcatccaacttggactgtcagatgtcccacaagttcctcgtgaagacagttttcttcctaactcagaggagaatacagagcagtgagtccttgaagcttggtgtaaccaaagggctcacacaagcattgcggaaggctttccaccagaatgacgtctccgctcacgtggacattctggaatattctcataatgtcacagttggctattatgctaccaaagggaggctggtgtatttgccggctgtggtgatggacgtgctgggtgtgtatggagtcagcaacgtcacggccgatctgaagcagcacgctcccaacttacagtctgtggcagtgcttgcctccccatggaagccccagcctgcaggtgccttccagctgaagacagtgctgcagtttgtaagccagtcagacaacatccagtcctgcaggtttgcccagacaatggagcagaggctgcagaaggcattccaggatgcagagaggaaggtcctcggcaccaggagcaacctgacagttcagatcgtgagcacgtccaatgcctcccaagccgtcacactggtgtatgctgtgggcaatcagagctccttcctcaacggcaccatggccagcagcctccttagccagctctcagctgagctggtaggattctacctcacctaccctccactcaccatcgctgaaccactggaatatcccaaccttgacacatcagaaacaaccagagactactgggtcatcacagtgctccagggtgtggacaactcgctggtgggtctgcacaaccagagctttgcccgggtcatggagcagcgcctggctcagctgttcatgatgtcccagcaacagggtcggcggtttaaacgtgctaccaccttgggaagctacactgtgcagatggtgaagatgcagcgagtgccaggaccgaaggacccggcggagctgacctactacacgctgtacaatgggaagccactgctggggactgcagcagccaagatcctgagcaccattgactcccagaggatggccctgaccctgcatcacgtcgtcctgctgcaagctgaccccgtggtaaagaacccacccaacaacctgtggatcatcgctgcagtgctggctcccatcgccgtggtcaccatcatcatcatcatcatcactgccgtgctctgtaggaagaacaagaacgacttcaagccagacaccatgataaacctgcctcagagagcaaagcctgtgcaaggctttgactacgccaagcagcatctgggccagcaaggggcagatgaggaggtcatccctgtgactcaggaaacggtggtcctccccatacctgtcagagatactcctcaggaaagagacacggctcaggatggcagtaccatcaagacggctaagtccactgaaaccagaaagaggtcgcccagtgagaatggctctgtcatcagcaacgaatcagggaagcccagctcagggaggtgctcaccccagaatggaatgacacagcagaaagtgacaaaggaggagtccaggaagagaaatgggacagcaagcgatgaagaggagggagcaggtctctttgacagtgctggcaaggcggcagcggatccctttgacacatcttctggatccgtgcagctcatagctatcaaaccgtcagctctgccggtagtgcaccccgcctcagacaggggcccggagtcttcagcggcgctcaacggcgaggtgagcaaggctctaaagcagaagtcagacatcgagcactatcggaacaagctacgcctgaaagccaagaggaaggggtactatgacttccccccagtggatgcagggaaaggcctaacagaaagaaaaaagatgtacgaaaaggccccaaaagaaatggagcatgctttggaaccagacccagaactgtgtgctcctttcgcagagtccaagaacaggcaacagatgaagaactcagtctaccgaagccggcagtctctgaacagcccgagtcccggagaaactgagatggaccttctggtcacacgggagcgaccccggcgtggaatccggaacagcggatacgacactgagcccgagatcatagaagagaccaacgtggacagagtccatgagccccggggctacggcagagcacggcagatgaagggccactcggagacctccacactgagctcgcagccttccatcgacgaagtccggcaacagatgcacatgcttctggaggaagccttcagcctggcgtctgctggccacgcgggccaaagccggcaccaggaggcctacggctccactcagcacctgccatactcagaggtggtgaccagtgctccagggaccatgacacggcccagggctggagtgcagtgggtgcccacctaccgaccagaaatgtaccaatacagcctgccccggccggcttacaggttctcccagcttcctgaaatggtcatgggcagtcccccccctcctgttcctccccggacaggccctgtggcagtggcttccctcaggcggtccacctcagacatcggcagcaagacccggatggcggagtccacaggacctgaggccacacagttgcatgacagtgcctcctttgcccaggtgtccagaggtcctgtgtccgtgacgcagctggatcagtcggcgttaaattattcaggtaacacggtgccagcggtgtttgccatcccagctgccaacagacccggcttcaccggctacttcatcccaactccaccgccgtcctacaggagccaggcctggatgtcctatgcaggagacagtgagctccctagccagtgggctgattcggtccctcttcctgggtacattgaggcctacccccggtcacgttatcaacagagctccccctccaggctccctcgccagtatagccagccaaccaaccttcaccccagcctagagcaggctcctgtgccctctgcagcggcctcacagcaaagcctgacagaaaatgagcctccagacactccgttgactaacatctccactgcggcccttgtgaaggctatccgagaggaggtagccaagttggccaagaagcagacagatatgtttgagttccaggtctaatgcctcaactctgaggggatcttcccttaaagactgtgaggcagccaacaggctttgggtttctctcccctaatgtgtggaggcgccagatgattaaaaaaacagtagacaagctctttctcaccctcggattctgagagtcaacagtggggcttctggaaatcaggaaacttgtaaacaactggattctgacttctgcagccaattgtgggtcaacaagtccctaactgggaccctgtgcttgatattctgttgggctgaatgtttggactgtgggtggaatgtccctgaggagccctagttctgagaggcactagctagcctgcaggttcctgtccaacgtcccattttcataaatcaccagaagggagagaatgctgctctgtcttcagtgacctctgcatgttctctttctgtgttaaaggcaacacaggagtgtgattaaccaccagactgtactctctcattgagccatgaccgtgatcgctttaaaaaaaaaatcacctctagtctgtaagggagatactgactctccaaccaagaaacttgattctctttgcttttaaaggttcatgttcaaagtcaaatgaattggatggaaatcagttccaatgactgtgcctataaatagtcccgactcctctcccccccacctgttaattaaaggccaagaaagagagccactgagccggaatggcagacttgtgttgacagcctgtttaaaaggtgttgtcagtttggaagtagagtctcctgccaatcggtatccaaatggaagagaatcggtgctaagaggcttgggagcctacaaaagagaagcagttgtttgtggaggttttgcttcatctgtattgaagatggcctgagaacctggccttccggagggagtaatagatacatcgactttaacaagatctatctcctactcagagacgttctgcacgcattgctgagtggcacgaagcagaccgttacgggtcccattagaaatgggaaaggtggatccatatcattccaagctgcagcctctgttcctagaaacttctgaatgtagaaaatcttatctgaaattaaattaaagcatctttttaaacgtttgtggagtctaccagttctccatagtggatggacgcaggaggacgtttgctgagatgtcagggatgctacctgtgggagtgacgtcccttgtcactctccctggcataaagcatcaacccacagcgtcctgggtagaaacactgccttgtagctctggggtaccaccagagcaaataaacccctctgtgcaaataaaactgatttgaggttccagaaataaaggaaactctaagtttccaccctagcttgggagccatgtatggtgtcagtgggccaatttggtgtgtattagggaacatggtcctacccgccttcacccatgacccatctcgcttccgctgtacccgtgtccctctgaacccatctatgcactgtcttcatgagtttctttggtctttactgagggaagagagaggagagtaggattggaactgattagaatgggagattcaaactgtcaaagcacagaactttcccaagaagctgtttttatttccgtatggcaaactgtcctttctggaatgttcagagacggtaatgtcgtggaatccccagacaagtctcttgtggggatgatgttaggtagcgccttttagtatgctggttgatctttcatagtgttagtcttttgttacttaataagaaatcagctataaataaaatgtatttttgtaatttccatgtatatatatggtatatttctaccaatggccagttatagtccaaatctgaaatcagcttgcagaacactgtggctggtgcaagatattattgacagactaacgggatgcctaaacccatccacacaggcattcgatgcacctgaatgaacaaagagccaaagaaactcagccttctcgtgcaaatggtggaagtctggtaacgccagctacaatgctccacttaatcaataatatcagcatcccatcaatgcagcgtatcaacccagtactttgtggacttagtaaatgcttggggtgtgagaaagaagtttttggaccatagtacatgattgcttcaaaaagacagtgtccaagctttgggctccaataacttccagatagatcaggaatctagagttaacaatggtgtggctccagattgctaggaaaatggagctgccactcagtggagagccccatgtaatgtttagttgattcggacaagtaaaatacagcattataaatcagattccctttaaactagacaccgtgtgttcaagaagcctatgcaaagaaaaccttaaattaatgaaaaaattcatagtcatattttcccaccatgattaaagcctcctgggactgagatgttgttccttccctaaagagtctcctaatcttagcatagaagactctgagaagttcagatggttaaaatcatgagatataaaagtgagctgaagttccacaggcacccagaggaggctgcagtgagctcaggtcatcatgaccttcgacagtccccgaagccatagaggatctcagtggtttggaaggaggaagccaaactccagacaagtggagggttgagccccagcctgctgattcatgccccagcctgctctccatttcaccaagctgcctgttcacttggggacacatttctctaactgtgcccaggggaaaaaaaaaaaaaggcagggtttatgtgagagattccatattgctcttgccaaaagaaaagtaaaagaaagaaagaaaaaaaaaaccaatttggctgtttccagagagttccactggagactatgtccttcgttgccatgggggtaatttactcactcagcaccgtggatcaaaaaggcaagcagggatgctctggcactgtcactgcatcaggtgacccagtagggtgggaacaggaaggcctgctgtgtggtctggtacctgagatctgagattgtacaggaacaggatggtaattgtgagctgcggaatggggggatgctgcctctggaagggttcacgacagctcgctctccctggagacatgatgctgtgcactcattattttaagagcccagggggggaaaaacaacaatcagatagacaaacaaaaaagatgtgcaacttctgaataatcttaattcaaaaaaaaaaagaaaaaggtaagatctgtgattcagaagaaagccttctgtggggatgggtagaatggcaattcttacatccaagtaaaagccatgtttccctgccaggcaaaacttgaaattgatcaaaaaatattgatttcatataaatgagtcccaggttttccccacatagcacacaagtactcaaaagttcagtgaataatggatgtaacagacgttttcaagttctagagaaaggtttgaacttaaacccaacctcagagtttggacttcccttaccagggacagtcctagcccccaaaggtgttaagtgtaatttagcttgtgacccagggtccaagcattggaagttaccgttctgtcatctagtccaccctcacaggtgttttagactcgaggaccagaaacctgtctagtcttgttccccctcagggaagagactggggcaaaggagagaagccaaatgcagatgtggcaaagggcaaggaaggcatcagcagtctacctgcttgctgggtctctctctctgtctctgtctctgtctctcctctctctctctctctctctctctctctctctctctctctctctctctggcactctctcctcagcagctcccatctgtctctctcagcacatctgcttcaccctgtcgcttgcctaggcacatccagcttcctcaccaatgcacatgaaaccagataccaacctcaggactcacgccacacctttcctgcccgggcacactactcttggactagcatctttgagactccttacacaaatgcttgagaatctgattgatcaagttcctatttgcctgaggtggataagccaccctcagggcaggtgcccagccagccagctgtaagcaaagaggcagggagccattcggcaggggctctcgtcgagggttggtaccccaaggaaggaccatgatcagcaggactccttaaaggaacctgccacagactgtaactgacggtatccctaagataccacccagcagccagcactcggagggcagtcctctggataccacccccaccctgaggaaaaggcatctcccactcgtacatgaggtgagagtgcacacacttgatcaattgatggactggccagactgcccccagacctccccacccctacccaccctagttaccactgctgggctccagaaaagatctctgaccaaggcccagtgaacccaatgtcttgctcagctcagcagacaataaatacttgtaaactgaattgcatgatcttagctcgggtgctattaatgtggctcccagccacacatttgcatggatgagaaaactgacgagcctctccatagagtctctctgagacaagattggtttcgagtgaaaatgataaccacgatggctctgagcttctggctagaagttacgtgttctgagaacagaaagggctcccgattgcttaggtgaactgttacagaatctaggtggtcataaatattgaaatgtaggtgtttctgagagggggtatgtaagaaatataactgtatctgaagcagattctcttagaagataccgagttgctttgattaggtttcaagaagagggagatttcgagaaggtagactttgtcctcagaggtcaagcccgtacttgatgtagagccatcctgttgtaactgtagaacatcctatgataaatctagaaactaatcgtttcgtccgctggcttgtgcggactcttgtaaattatggaaggaggccatccaatgtactttacataaattaaccgtggcctcaccttgcgctccttcatttcttctttgggtctaaactcacctccaccctcacataaattaaggagagaaaagaaaaaaaaatgtaccaaacaaaatgggaggagtgttgctggagtggagattctgagagggtgtgaatattctaggacttgagtgactcactctggccggtctgtgactcctctcgggtcaaatggaaatactaacatctgtacttcctacctccatgaggagcatgtgtacaatgtgtctgaacctggtttgggaagtgtactggaaagattggctattaaagccatttgttttacaactcagttgggtccagctcctgctacccactgaattaatttgtgttgtcatgtgttcaatgacacaacttcttatcaaggaagaataaaggaattctgcagtttgtaattgcccacaaaggtcagcccacatggagttgctgttatcgcctgtggtttggagggtatgtgagtgtttctacgtgtgctttgactctgggtggaaaaaacccagactgtgagtctctcaaaccactttagatgcactgggcaaagtcgtgaatgggagctttgaatgtagcggttgttacttcgatgctttgcttcctaattaactttgtacgtcctctgcctctgccgggaacagagtgttcatatgctgttagaattttttattgtaaaataaaatgacaaaggctttcataccccaaaa

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