2024-04-29 10:42:03, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_008759749 8550 bp mRNA linear ROD 11-JUN-2023 DEFINITION PREDICTED: Rattus norvegicus trinucleotide repeat containing adaptor 6A (Tnrc6a), transcript variant X3, mRNA. ACCESSION XM_008759749 VERSION XM_008759749.3 DBLINK BioProject: PRJNA677964 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_051336.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jan 21, 2021 this sequence version replaced XM_008759749.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_015227675.2-RS_2023_06 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 06/06/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..8550 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN/NHsdMcwi" /db_xref="taxon:10116" /chromosome="1" /sex="male" /tissue_type="kidney" /country="USA: Wisconsin, Milwaukee, Medical College of Wisconsin" /collection_date="2019-03-08" /collected_by="Rebecca Schilling" gene 1..8550 /gene="Tnrc6a" /gene_synonym="Tnrc6" /note="trinucleotide repeat containing adaptor 6A; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 67 ESTs, 9 long SRA reads, 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns" /db_xref="GeneID:308971" /db_xref="RGD:1307268" CDS 293..6181 /gene="Tnrc6a" /gene_synonym="Tnrc6" /codon_start=1 /product="trinucleotide repeat-containing gene 6A protein isoform X3" /protein_id="XP_008757971.1" /db_xref="GeneID:308971" /db_xref="RGD:1307268" /translation="
MQLVAEPGLEARCPGSQDTPLPEEWNRDLVQEEEQLMEEKKRKKDDKKKKEAAQKKATEQKIKVPEQIKPSVSQPQPANSDNGTSTATSTNNNAKRATASNQQPPPPQQQPQQQQQQQQQQQEQQQQQQQQQQQQQQPQALPRYPREVPPRFRHQEHKQLLKRGQHFPVIAANLGSAVKVLNSQSESSAVTNQQPQNNGEVQNSKSQSDINHNTSGSHYENCQRGPVSSTSDCSTSCKNAVNDLLEKEAWPSAPGSDPELASECIDADSASNSESERNITVMASGNTGGEKDGLRNSTGLGPQSKFVVGSSSNNVGHGSSTGPWGFPHGAIISTCQVSVDAPESKPESSNSRMNAWGTVSSSSNGGLNPSTLNSASNHGAWPVLENNGLALKGPVGSGNSGINIQCSTIGQMPNNQSINSKVSGSSTHGTWGSLQETCEPEVSGSQKVSFSGQPQNITTETTGPNNTTNFMTSSLPNSGSVQNNELPTSNPGAWRVSTMNHPQIQAPSVLNGTSLSHLSNGESKTGGSYGTTWGAYGSNYSGDKCAGPNGQANGDTVNATLMQPGINGPMGTNFQVSTNKGGGVWEPGTVNSQSSPWGSGNGANSGGSRRGWGSPAQNTGTSLSSVEWNKLPSNQHSNDSANGNGSKKLTNGWKSTEEDDQGSGTSQTNEQNSVWAKAGGTVESDGSAESTGRLEEKVTGESQSRDRRKIDQHTLLQSIVNRTDLDPRVLSNSGWGQTPIKQNTAWDTETSPRGERKTDNGTEAWGSSATQTFNSGACTDKTSPNSNDTSSVSGWGDPKPTLRWGDSKGSNCQGGWEDDSAATGMIKSNQWGHCKEDKSAWNDSQKNKQGWGDGQKSSQGWSVSASDNWGESSRSNHWGEANKKSSSGGSDSDRSISGWNELGKTSSFTWGNNINPNNSSGWDESSKPNSSQGWGDPPKCNQSLGWGDSSKPVSSPDWNKQQDIVGSWGIPPATSKPPGTGWLGGPIPAPAKEEEPTGWEEPSPESIRRKMEIDDGTSAWGDPSKYNYKNVNMWNKNIPEGSSRSDQQAQMHRLLPAASAISSKETSSGSGWGEPWAEPSTPATTVDNGTSAWGKPIDSGPSWGEPITAASSASTWGSNSVGPQSLSKSGPKSMQDGWCGEDTPLPGSRPTGWEEEEDVEIGMWNSSSSQELNSSLNWPPYTKKMSSKGMMKGGNKQEDAWINPFVKQFSNISFSRDSPEENVQSNKMDLSGGMLQDKRMEIDKHSLNIGDYNRAVGKGPGSRPQISKESSMERNPYFDKDGIVADESQNMQFMSSQSMKLPPSNNALPNQALGSIAGLGTQNLNSVRQNGNPSMFGVGNTAAQPRGMQQPPAQPLSSSQPNLRAQVPPPLLSPQVPVSLLKYAPNNGGLNPLFGPQQVAMLNQLSQLNQLSQISQLQRLLAQQQRAQSQRSVPSANRQQQDQQGRPLSVQQQMMQQSRQLDPSLLVKQQTPPSQQPLHQPAMKSFLDNVMPHTTPELQKGPSPVNAFSSFPIGLNSNLNVNMDMNSIKEPQSRLRKWTTVDSMSVNTSLDQNSSKHGAISSGFRLEESPFVPYDFMNSSTSPASPPGSIGDGWPRAKSPNGSSSVNWPPEFRPGEPWKGYPNIDPETDPYVTPGSVINSLSINTVREVDHLRDRNSGSSSSLNTTLPSTSAWSSIRASNYNVPLSSTAQSTSARNSDSKLTWSPGSVTNTSLAHELWKVPLPPKNITAPSRPPPGLTGQKPPLSTWDNSPLRVGGGWGNSDARYTPGSSWGESSSGRITNWLVLKNLTPQIDGSTLRTLCMQHGPLITFHLNLPHGNALVRYSSKEEVVKAQKSLHMCVLGNTTILAEFASEEEISRFFAQSQSLTPSPGWQSLGSSQSRLGSLDCSHSFSSRTDLNHWNGAGLSGTNCGDLHGTSLWGTPHYSTSLWGPPSSSDPRGISSPSPINAFLSVDHLGGGGESM"
misc_feature 3551..3901 /gene="Tnrc6a" /gene_synonym="Tnrc6" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" misc_feature 4178..4735 /gene="Tnrc6a" /gene_synonym="Tnrc6" /note="M domain of GW182; Region: M_domain; pfam12938" /db_xref="CDD:432890" misc_feature 4808..5593 /gene="Tnrc6a" /gene_synonym="Tnrc6" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:435458" misc_feature 5615..5890 /gene="Tnrc6a" /gene_synonym="Tnrc6" /note="RNA recognition motif (RRM) found in vertebrate GW182 autoantigen; Region: RRM_TNRC6A; cd12711" /db_xref="CDD:410110" ORIGIN
catgtgactcccagggctacgtgggctcaaaaacaatttaaatacaaaaacacacgcaggttcccctccttccctttgccttttggtctggctctctctacctttgcgttggtgcctgaccgaatggaaaacccgttcttcgttttgcagcctgtgagctccgggtacctggagaccaggccctgtgctgcccccaccccgggagccgtgcccccatcattctgcagtcctctgactatcagcctggtgtggacactgaggcccagagaggtgatgtgatttgcctaaagtcatgcaactagtggcagaaccaggcctagaagccaggtgtcctggatctcaagataccccactgcctgaggaatggaacagggatttagtgcaagaagaagaacagttgatggaagaaaagaaaaggaaaaaagacgacaagaaaaagaaggaagctgctcaaaagaaggccactgaacaaaaaatcaaagtgccagaacagataaagcctagtgtaagccagcctcagcctgccaactccgataacggcacttccacagctaccagcactaataataatgccaagcgagctacagccagcaatcagcagccgccgccgccgcagcagcagccgcagcagcagcagcagcagcagcagcaacaacaagagcagcagcagcagcagcagcagcagcagcagcagcagcagcagccacaagccttgcctcggtatcctcgtgaagtacctccacgatttcgccaccaggaacacaaacagcttctaaagaggggtcagcattttccagtcatagcagcaaacttgggatctgctgttaaggtgttaaacagccaatcagaaagcagtgctgtaacaaatcaacagccacaaaataacggagaggtgcagaacagcaaaagccagtcagatataaatcataatacttcaggatcccattatgaaaattgccagcggggacctgtgtcttctacaagtgactgtagcacaagctgtaagaatgctgtaaacgacttgttggaaaaagaagcatggccctcagcccctggcagtgatcctgagttggcttcagaatgtatagatgctgattctgcctccaattctgagtcagagagaaacatcactgtcatggcttcagggaacacaggtggtgagaaagatggccttcggaacagcactggactcggtccccaaagcaaatttgtggttggtagcagcagcaataatgtgggtcatggaagtagtactgggccatggggctttccccatggagccataataagcacatgtcaggtctctgtggatgctcctgaaagcaaaccagaaagtagtaacagtagaatgaatgcttggggcactgtaagttcttcatcaaatggagggttaaatccaagcactttgaattcagctagcaaccatggtgcctggccagtattagaaaacaacggacttgccctaaaagggcctgtagggagtgggaattctggcatcaatattcagtgtagtaccataggccagatgcctaacaatcagagtatcaactctaaagtcagtggctcttctacccatggtacctggggtagccttcaggaaacttgtgagcctgaagtaagtggttcacagaaggtttcattcagtggtcaacctcagaatatcaccactgaaacgactggaccaaataacactactaactttatgacctctagtttaccaaactccggttcagtacaaaataatgaactgcctactagtaatccaggggcctggcgtgtgagcacaatgaatcatcctcagatacaggctccgtcagttctgaatggcacttccctttctcaccttagtaatggagagtcaaaaactggaggctcctacggtactacatggggtgcctatggttctaattactctggcgacaaatgtgcaggccctaatggccaagccaatggtgacactgtgaatgcaactctaatgcagcctggcataaatgggcctatgggcactaactttcaagttagtacaaataaagggggaggtgtatgggagcctgggacagtgaattcccagagttcaccatggggaagtggaaatggtgcaaattctggaggaagtcgaagaggatggggaagtcctgcacagaacactggcactagtctgtccagtgttgagtggaacaaactgcctagcaaccagcattccaatgacagtgcaaatggcaatggtagtaagaaacttacaaatggatggaaatctactgaggaagatgatcagggttctggcacatctcagacgaatgagcaaaacagtgtgtgggccaaagcaggaggcacagtggagagtgatggtagtgcagagagcactggacgccttgaagaaaaagtaaccggggaaagccagagtagagatagaagaaaaattgatcagcacacattactccaaagcattgtaaacagaactgacttagatccacgtgtcctatccaattctgggtggggacagactcctattaagcagaatactgcctgggatacagagacatcaccaagaggggaaagaaagactgacaatgggacagaggcctggggaagctctgcaacacagacttttaactcaggggcatgtacagataagactagccctaatagtaatgatacctcatctgtatcagggtggggtgatcccaaacctactctgaggtggggagattccaaaggctcaaactgccagggggggtgggaagatgattctgctgctacaggaatgatcaagagcaatcagtgggggcattgcaaagaagacaagtctgcatggaatgattcgcaaaagaacaaacaaggctggggcgatggacaaaagtcaagccaaggttggtccgtttctgccagtgataactggggagaatcttccaggagtaaccattggggtgaggctaataagaaatccagctcaggaggcagtgacagcgacaggtccatttctggttggaacgaacttggtaaaactagttcttttacttggggaaataatataaatccaaataactcatcaggatgggatgaatcttctaaacctaactcttcccagggatggggagaccctccaaagtgtaatcagtccctaggttggggagattcatcaaaaccagttagttctccagattggaacaagcaacaagacattgttggatcgtggggaatcccaccagccaccagcaagcctcctggtacaggctggcttgggggacctattcctgctccagcaaaggaggaagaacccacaggctgggaggaaccatccccagagtctatacgacgaaaaatggagatcgatgatggaacttcagcttggggagatccaagcaaatacaactacaaaaatgtgaacatgtggaataaaaacatcccagaaggcagcagccgctcagaccagcaagcacagatgcaccggttgttgccggctgcaagtgccatctcaagcaaggagaccagcagtggctctggctggggtgagccttgggcagagccttctactccagccacgactgtggataatggtacttcagcctggggcaagcccatagacagtggtcccagctggggagaacccattactgcagcatccagtgcatccacgtggggctccaactctgttggtccacaatcattaagcaaatctggacccaaatctatgcaagatggctggtgtggtgaggacacgccattgcctggaagtcgccccactggctgggaagaggaggaggatgtagagattgggatgtggaacagtagctcatctcaagagcttaactcatccttaaactggccaccatataccaagaaaatgtcatccaagggaatgatgaaaggcggaaacaaacaagaggacgcgtggataaacccattcgttaagcagttttcaaatatcagtttttcaagagactcaccagaagaaaatgtacagagcaataagatggatctttctggaggaatgttacaggacaagcggatggagattgataagcatagcctgaatattggtgactacaatcgagcggtcgggaaaggccctgggtctcggcctcagatttccaaagagtcttccatggagcgcaatccttactttgataaggatggcattgtagcagatgaatcccaaaacatgcagtttatgtccagtcaaagcatgaagcttcccccttcaaataatgcactacctaaccaggcccttggctccatagcagggctgggtacgcaaaacttgaattctgttagacagaatggcaatcccagtatgtttggtgttggaaacacagcagcacaaccccggggcatgcagcagcctccagcacaacctctcagttcatctcagcctaatcttcgtgctcaagtgcctcctccattactctcccctcaggttccagtttcattgctgaagtatgcaccaaacaacggtggcctgaatccgctctttggccctcaacaggtagccatgctgaaccagctatcccaactaaaccagctttctcagatctcccagttacagcgattgttagcgcagcagcagagggcacagagtcagagaagcgtgccttctgctaaccgacagcagcaagaccagcagggtcgacctcttagtgtacagcagcagatgatgcaacagtctcgtcagcttgatccaagcctgctggtgaagcagcagactccgccttctcagcagccgctccatcagccagccatgaagtccttccttgacaatgtcatgccccacactacacccgagctacagaaagggccatcgccagtaaacgctttcagcagcttccctataggcttgaactcaaacttgaatgtaaatatggatatgaacagtattaaagagccacagtcacgactaaggaagtggacaacagtggacagcatgtctgtgaacacgtctttggatcaaaactccagcaaacatggtgctatttcaagtggttttaggctggaagagtctccatttgttccctatgactttatgaatagcagtacttcaccagccagtcctccaggttcaataggagatggctggccacgtgccaaatcgcctaacggctctagcagtgttaactggccaccagaatttcgccctggtgaaccatggaaaggttatccaaacattgaccctgaaactgacccttacgtcactcctggcagtgtcataaacagtctttcaattaatactgtgcgggaagttgaccacctcagggacaggaacagtgggtcatcctcatccttgaacaccacgctgccttcaactagtgcctggtcatccattcgtgcctccaactacaatgttcccctcagcagtacagcacaaagcacttcagccagaaatagtgattccaaattgacgtggtctcctggttcagttacaaacacctctctggctcatgagctgtggaaagtccctttaccacctaaaaacatcactgctccgtcccgcccacctccggggctgactggtcagaagccacccttgtctacgtgggataattctccccttcgtgtaggtggaggatggggaaattctgacgccagatataccccaggctccagctggggtgagagcagctcagggagaataaccaattggcttgttctgaagaacctcacacctcagattgacggctccactctgcgcaccctgtgcatgcagcatggcccactgattacattccatctgaacctcccacatggaaatgctctggtccgttacagttcaaaggaagaggtagtgaaggcacaaaagtctctgcacatgtgtgtgctggggaacactactattctcgctgagtttgccagtgaagaggagatcagtcgcttctttgcacaaagtcagtctctgaccccttctcctggctggcagtctctcgggtccagccagagccggctgggctccctcgactgttcccactcattctccagccggactgatctcaatcactggaatggtgctgggctgtcgggaactaactgtggagaccttcacggcacttccctctgggggaccccacattattccacaagcctgtggggtcccccaagcagcagtgacccccggggaattagcagcccatcccccattaatgcttttctttctgttgaccacctgggtgggggtggagagtccatgtaatcgcataggtatagacgtaaactgtgacctcaagaagagaaggaaaggagcactaagttgggctcgccgcctgcagccagggccacctgtgggaacagcttttttctgcacattttccactttgttttccccaaaacatatcagtttgaatacttgaatcatgcaggccaatattataatgtgaaagggtatctatctatttacactcccaaatagcgccatacagctaaccgtgtggaatgagctcactagtgtattcatcatgtgtagccttcagattccttctttccttcatttccatcccccatccccaccttttatttttattttttttttgtttttttgtttttttgttttttttttttttttttaaaaccgttttgggctgatgtatgagcttttacctttgcactgagtgacgttctctccgtctgagcggcagcgtgggggacagctgctccagtgtaaatgtttactcaaggatgttcctaaaggcgtgcgctctctactacgcctcgtgttgcctaccttagtgtggtgtcgtggagttcaagatcaagttgagatactgacgtagggttcttaatgaaagtattgcaccagttttttcatgttgtaaaactaaagaatttcgctctacagtttgagaaactgtggccaccgctgtgacccgcagcccgcctgctgcccaggttgggccctgcactttgaacaggctttccatgttgttttgaaggttcccacggtgaaccttcttgtttacagattttttgtttgttttttgagaaaaaaaatgtttactcttccatcatttaaaaaaaaaaaattaaaagacaaaaaaaaaaaaaaagcggagggtggttaaagacgcttctatctctgggaaaagagcagcattggccatgttcttctgttttctatccccgtcctgaatcaaagagcatggttctcaggaaaccagtccccggtcaaacaatcttgtagtttcttataggaaagaagaaacccaactcttagcactgatactacgtattgctctgttcaagattttctctgccaaaaaaaaagaaaaaaagaaaaaaaaaaaaagaaaagaaaaaccgcgcttcgagctggagttgccgcctgctttcagatgctgtcctttagtagtgggtgatgatggtttgctaatcgctaggtgacttttgtaaccccatcagtggctctcatgtctctgctctcttgtgactgtgttcatgtttaactgttgtaccttaaagccgagatcagtaactatgcatactgtaaccaagacattgggcttacagagttgtttgttgtataaaaattttaaatgttgttgcaaactaacgagttacaccattttaaaatttctttcctccccagcccctgttgttctgcccacaaatggtattataatgcttgcttagtcagagagactaaacaagggtaaagttttaacagtacagagtatgccgtcatttcattgccttgattctaacgtttgtgtcctaagacgcaaaagaggtcagtggcttttaactgtttacaaataggatgtgattgtaagtgtacactttggttgtgtttgaattatgaaatcttcagataataaaccatgactttttggctgctcaacattaattgtctcttttttgtgaatttattcgtaggctcttttataatgaaagttacaaagttgctgcatgtgagaggtcttctcatagagcagcagattaaaaatctaagcaaatatttgaacgttttacctgaacttctccacaatcaccctgagataatgtgagaacagtggaaactgtagcttgctccctcctcccctgagcatctttgggagcttgttgctcaaagctcttctctggcttcaccttccccaccatctgtgcccatctcaagcctcagcgggaccattcggaacacgaagcttactgacttgacagcatcctagcgttaacctctcatacctcacacagtggggatgccaccacctggactggcctctcttccccgtgccctccgcccctcctcgctgcaggagctctgggcgcagaacctgtatgacttcagtcacgctccacttgccaggtgtaagctaatgttggacaccgtaacctaaacaaatgtttaacgcgttcggtgtgtgttgacgtccatactggtttttccaaaaaccaaaggtagctttgaaaaaccatgtgtggagatgtttggaacattaagctgagtgaccgttaggggctttgagtagtatataactgacttcatgacttcgttaattgtattgttaaaagtgtttgggagttttttgcgcttgttatgtggaaataaagtgtttgatttaaaaaata
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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