2024-04-27 19:54:18, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_031566 9023 bp mRNA linear ROD 12-JAN-2022 DEFINITION Rattus norvegicus nuclear factor I/B (Nfib), transcript variant 2, mRNA. ACCESSION NM_031566 XM_001059586 XM_001059704 XM_001059759 XM_001059813 XM_001059879 XM_001059950 XM_001060012 XM_001064131 XM_342854 VERSION NM_031566.2 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE 1 (bases 1 to 9023) AUTHORS Zhang WQ, Feng L, Wang HJ, Du XF, Hao XL, Li YZ and Cheng L. TITLE Inhibition of microRNA-495 inhibits hypoxia-induced apoptosis in H9c2 cells via targeting NFIB JOURNAL Eur Rev Med Pharmacol Sci 25 (1), 335-343 (2021) PUBMED 33506922 REMARK GeneRIF: Inhibition of microRNA-495 inhibits hypoxia-induced apoptosis in H9c2 cells via targeting NFIB. REFERENCE 2 (bases 1 to 9023) AUTHORS Yang B, Dong R and Zhao H. TITLE Inhibition of microRNA-346 inhibits myocardial inflammation and apoptosis after myocardial infarction via targeting NFIB JOURNAL Eur Rev Med Pharmacol Sci 24 (22), 11752-11760 (2020) PUBMED 33275244 REMARK GeneRIF: Inhibition of microRNA-346 inhibits myocardial inflammation and apoptosis after myocardial infarction via targeting NFIB. REFERENCE 3 (bases 1 to 9023) AUTHORS Schanze I, Bunt J, Lim JWC, Schanze D, Dean RJ, Alders M, Blanchet P, Attie-Bitach T, Berland S, Boogert S, Boppudi S, Bridges CJ, Cho MT, Dobyns WB, Donnai D, Douglas J, Earl DL, Edwards TJ, Faivre L, Fregeau B, Genevieve D, Gerard M, Gatinois V, Holder-Espinasse M, Huth SF, Izumi K, Kerr B, Lacaze E, Lakeman P, Mahida S, Mirzaa GM, Morgan SM, Nowak C, Peeters H, Petit F, Pilz DT, Puechberty J, Reinstein E, Riviere JB, Santani AB, Schneider A, Sherr EH, Smith-Hicks C, Wieland I, Zackai E, Zhao X, Gronostajski RM, Zenker M and Richards LJ. TITLE NFIB Haploinsufficiency Is Associated with Intellectual Disability and Macrocephaly JOURNAL Am J Hum Genet 103 (5), 752-768 (2018) PUBMED 30388402 REFERENCE 4 (bases 1 to 9023) AUTHORS Mellas RE, Kim H, Osinski J, Sadibasic S, Gronostajski RM, Cho M and Baker OJ. TITLE NFIB regulates embryonic development of submandibular glands JOURNAL J Dent Res 94 (2), 312-319 (2015) PUBMED 25403566 REFERENCE 5 (bases 1 to 9023) AUTHORS Archambaud C, Nahori MA, Soubigou G, Becavin C, Laval L, Lechat P, Smokvina T, Langella P, Lecuit M and Cossart P. TITLE Impact of lactobacilli on orally acquired listeriosis JOURNAL Proc Natl Acad Sci U S A 109 (41), 16684-16689 (2012) PUBMED 23012479 REFERENCE 6 (bases 1 to 9023) AUTHORS Grunder A, Ebel TT, Mallo M, Schwarzkopf G, Shimizu T, Sippel AE and Schrewe H. TITLE Nuclear factor I-B (Nfib) deficient mice have severe lung hypoplasia JOURNAL Mech Dev 112 (1-2), 69-77 (2002) PUBMED 11850179 REFERENCE 7 (bases 1 to 9023) AUTHORS Baumeister H, Gronostajski RM, Lyons GE and Margolis FL. TITLE Identification of NFI-binding sites and cloning of NFI-cDNAs suggest a regulatory role for NFI transcription factors in olfactory neuron gene expression JOURNAL Brain Res Mol Brain Res 72 (1), 65-79 (1999) PUBMED 10521600 REFERENCE 8 (bases 1 to 9023) AUTHORS Osada S, Matsubara T, Daimon S, Terazu Y, Xu M, Nishihara T and Imagawa M. TITLE Expression, DNA-binding specificity and transcriptional regulation of nuclear factor 1 family proteins from rat JOURNAL Biochem J 342 (Pt 1), 189-198 (1999) PUBMED 10432316 REFERENCE 9 (bases 1 to 9023) AUTHORS Liu Y, Bernard HU and Apt D. TITLE NFI-B3, a novel transcriptional repressor of the nuclear factor I family, is generated by alternative RNA processing JOURNAL J Biol Chem 272 (16), 10739-10745 (1997) PUBMED 9099724 REFERENCE 10 (bases 1 to 9023) AUTHORS Chaudhry AZ, Lyons GE and Gronostajski RM. TITLE Expression patterns of the four nuclear factor I genes during mouse embryogenesis indicate a potential role in development JOURNAL Dev Dyn 208 (3), 313-325 (1997) PUBMED 9056636 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JACYVU010000162.1. On Dec 28, 2021 this sequence version replaced NM_031566.1. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: AB012231.2 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMD00132261, SAMD00132262 [ECO:0000350] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-1049 JACYVU010000162.1 11522252-11523300 c 1050-1581 JACYVU010000162.1 11515826-11516357 c 1582-1635 JACYVU010000162.1 11399545-11399598 c 1636-1704 JACYVU010000162.1 11377876-11377944 c 1705-1825 JACYVU010000162.1 11371830-11371950 c 1826-1944 JACYVU010000162.1 11368895-11369013 c 1945-2079 JACYVU010000162.1 11349550-11349684 c 2080-2264 JACYVU010000162.1 11347006-11347190 c 2265-2403 JACYVU010000162.1 11343037-11343175 c 2404-2486 JACYVU010000162.1 11339731-11339813 c 2487-9023 JACYVU010000162.1 11308507-11315043 c FEATURES Location/Qualifiers source 1..9023 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN" /db_xref="taxon:10116" /chromosome="5" /map="5q31" gene 1..9023 /gene="Nfib" /note="nuclear factor I/B" /db_xref="GeneID:29227" /db_xref="RGD:62015" exon 1..1049 /gene="Nfib" /inference="alignment:Splign:2.1.0" misc_feature 1008..1010 /gene="Nfib" /note="upstream in-frame stop codon" CDS 1020..2504 /gene="Nfib" /note="isoform 2 is encoded by transcript variant 2; olfactory epithelium nuclear factor I-B; nuclear factor 1 B-type" /codon_start=1 /product="nuclear factor 1 B-type isoform 2" /protein_id="NP_113754.1" /db_xref="GeneID:29227" /db_xref="RGD:62015" /translation="
MMYSPICLTQDEFHPFIEALLPHVRAIAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLSEKPEIKQKWASRLLAKLRKDIRQEYREDFVLTVTGKKHPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLMKSPHCTNPALCVQPHHITVSVKELDLFLAYYVQEQDSGQSGSPSHNDPAKNPPGYLEDSFVKSGVFNVSELVRVSRTPITQGTGVNFPIGEIPSQPYYHDMNSGVNLQRSLSSPPSSKRPKTISIDENMEPSPTGDFYPSPNSPAAGSRTWHERDQDMSSPTTMKKPEKPLFSSTSPQDSSPRLSTFPQHHHPGIPGVAHSVISTRTPPPPSPLPFPTQAILPPAPSSYFSHPTIRYPPHLNPQDTLKNYVPSYDPSSPQTSQPNSSGQVVGKVPGHFTPVLAPSPHPSAVRPVTLTMTDTKPITTSTEAYTASGTSQANRYVGLSPRDPSFLHQQQSWYLG"
misc_feature 1047..1160 /gene="Nfib" /note="Nuclear factor I protein pre-N-terminus; Region: NfI_DNAbd_pre-N; pfam10524" /db_xref="CDD:371114" misc_feature 1224..1538 /gene="Nfib" /note="N-terminal Mad Homology 1 (MH1) domain; Region: MH1; cl00055" /db_xref="CDD:412134" misc_feature 1644..2486 /gene="Nfib" /note="CTF/NF-I family transcription modulation region; Region: CTF_NFI; pfam00859" /db_xref="CDD:425913" exon 1050..1581 /gene="Nfib" /inference="alignment:Splign:2.1.0" exon 1582..1635 /gene="Nfib" /inference="alignment:Splign:2.1.0" exon 1636..1704 /gene="Nfib" /inference="alignment:Splign:2.1.0" exon 1705..1825 /gene="Nfib" /inference="alignment:Splign:2.1.0" exon 1826..1944 /gene="Nfib" /inference="alignment:Splign:2.1.0" exon 1945..2079 /gene="Nfib" /inference="alignment:Splign:2.1.0" exon 2080..2264 /gene="Nfib" /inference="alignment:Splign:2.1.0" exon 2265..2403 /gene="Nfib" /inference="alignment:Splign:2.1.0" exon 2404..2486 /gene="Nfib" /inference="alignment:Splign:2.1.0" exon 2487..9023 /gene="Nfib" /inference="alignment:Splign:2.1.0" ORIGIN
agcggggtccagagggtggaaccggtgaatctttcaacttgcaagtttttcaaggaaagaaagcgagagagggagggggaaagcgcccagaacagaaaagaggagtttgcagccaagcgggatcgatcgtttgggatttttttcaggaggtccttccgatcccttccgtgggctgtgggcatcggcaccggcagcggagtccacgctcggcgggtcagacgcggggcgaggcgggcgggcggcggtgtggcggggcaggagcgcagcaaaggcttttccgcccgggagctccgcgcctgcgccccctccctcaccccggcctctccctgctcccccctccccacccccacccggccctctccggcgcgcgccccgccacccgcgcgcactcgcttgcgctccccctcgcgcacacacatggtcggctcgcggcaaagtttcgcctgcgttcgccactcccggatcctgctgcagtattggcggcggtaaccttgaactttcccagcgcggtgacacattctcctcgctttccccaccgcccggcctcctgcgcccccctccccgcctttttttaaaaaaagcatttcaccacccaccaccaccccaatccaacacacgccgaactctcgcgcaccccaagcccccaacaacaacaacaacaacaacaacaacaacaacaacaacaactgcaaaacagaaaacaaatcccctaaaccgggcgaccagcagcctgcaccggcggcggcctcggagagctcggccggcgcgcgcggaccgcaagagggttaaaagtgtagattggatttcaccccgggaaatctagctcgccgagtgaacttgaatctttggctatttaaggaggactgggtttgttgcgaagttgcggtgatccggcgcagagccccgtcctgattgatcgcaccgctgggctcagatgactgtaaaatgaatagatgaaatccttgcttctcgaagattttcttgggcatctccgggaaagtgcgttttaaggcgaagtcatgatgtattctcccatctgtctcactcaggatgaattccacccatttattgaggcgcttcttccacacgtccgtgcaatcgcctatacgtggttcaacctgcaggctcgaaaacgcaagtactttaaaaagcatgagaagcggatgtcgaaggatgaagaaagagcagtcaaagatgagctgctcagtgaaaagcctgaaatcaaacagaagtgggcatccaggctcctggccaagctgcgcaaagatatccgccaggagtaccgcgaggactttgtgcttaccgtgactggcaagaagcacccgtgctgtgtcttatccaatccagaccagaagggtaagattaggaggatcgactgcctgcgacaggcagacaaagtctggcgtctggatctagtcatggtgatcctgttcaaaggcatccctttggagagtaccgatggagagcgacttatgaagtccccacactgcacaaacccagcactttgtgtgcagccgcaccatatcacagtatcagttaaggagcttgacctgtttttggcatactacgtgcaggagcaagattctgggcaatcaggaagtccaagccacaatgatcctgccaagaatcctccagggtacctagaggacagttttgtaaaatccggagtcttcaacgtatcagagcttgtgagagtatccagaacacccataacccaggggactggagtcaacttcccaatcggagaaatccccagccaaccatactatcatgacatgaactctggcgtgaacctgcagaggtcgctgtcttctccaccgagcagcaaaagacccaaaactatatccatagatgaaaatatggagccaagtcctacaggagacttttacccctctccaaattcaccagctgctggaagtcgaacatggcatgagcgagatcaagatatgtcttctccaactacaatgaagaagcctgagaagccactgtttagctctacatctccacaggattcttccccaagattgagcacttttccccagcaccaccatcccggaatacctggagtcgcgcacagtgtcatctcaactcgaactccacctccaccctcaccgttgccatttccaacgcaagctatccttcctccagcaccatcaagttacttttctcatccaacaatcagatatcctcctcacctgaatcctcaggatactctgaagaactatgtaccttcttatgacccgtccagtcctcaaacgagccagcctaacagcagtggtcaagtagtagggaaagtgcctggccatttcacgcctgtcttggcaccctctccccatcccagtgcagtgcgacctgtgaccctgaccatgacagatactaaacccatcactacatccactgaagcctacacagcctcaggcacatctcaagccaatcgatatgtgggactaagcccaagagacccatccttcctgcatcagcaacagtcctggtacctgggctagcttggttccttttcaagtgtcaaataggacacccatcttaccggcaaatgtccaaaattatggtttgaacataattggagaacctttccttcaagcggagacaagcaactgaggggaaagaaacacaaccatagtgtaagaaaattaggggaaaaacacccaacaaaagaaaagaggaagactggacaacagggagaaaggagagaaactgaagaaagaagacgctagaccagcattgcagcacttccggtcactaattcccttaaggttgagactgtagtgacaggaaagggtcaatgacatctcaccgatgctagactgcagcccctgcaccgtagcctttgttccatgaagtccgctgggaaatagatgttctgtctctatgacaatatattttaactgactttctagatgccttaatatttgcatgataagctagttttcttggttagtattcttgttgtttacgcatggagtcactattcctggttatctcaacaacgaaggctaggaggcggcgtcagaggggctggggacagagccatgagccagccattttataagcactctgatttctaaaagttaaaaaaaattatatatatatatatataaaaatctctgtagcctttagttatccgtacagatttattaaattttggcccttaacccagccttttccagtgtgtaacccagtttgaaaatcttaaaaaggaaaaaaaaagaaaactagggaaaaaatggtttgaactcaaaggctctatggaagaaatgcctctaggtgggtaaagggttacctctgcatgcaacagtaaaaattaatataatattttccccacaaaagaaacacttaacagaggcaagtgcaatttataaatttatatctaaaggggaatcatgattataagtccttcagcccttggactctaaattgaggggattaaaaagaatttaaaataattttgagtgaatttattttcccctcagtttttgagggcacttaaaaaggcattaaatcaagacaaatcatgtgcttgaacagaaaaaaataaaaaataaaaaaaaatattgaaaacacagcacttaggttggcttagctgcagcctcctcagaggtcgaattatttatttaaaattactggttgcatcaagaacccatagggtgtacaaatggttctatacaatctgcatagtagagacaaagaggcaggttaatccatgtcacaagggtaaagcttccagtgtacaggctgggaacgccagggcatagaataggaaaacacgctcttcagagaagtgccatcagggtgctgggaacatgcatggtgctttcggacattagccttgttcaacacatttctcgtaatgacagatctatagtgtgcatgggcagacacatgttgcctctatgtctcttaaaattttaattaaaaagtactctttccagtaatcctaatttgcacgaagatataatgtccacattacgtgccttgccttgaaatctaaaaaacaaaagacaaaaaaaaaaaatccacaaaagtgacatcactacacttgttttgctgcatttattatcgttttaaatctttaccatttttatgacaaaatattttgtactccagacgaagaaaaatgtgtgacatcatggattttttagacagttacacctttatctcacatttataaagcatatcatggctgtgtatagttgccgcttaaaaattgtaatcgaccagcaatattttcagtattttggtgttttttctattaacctttcatgtttttcatcttccaattaatatttggggggaggggtttcaaatttatacgaattatgcaataccaagttttgcctatgtaggtagtgcttttagctgtattggttattataggtaagtacacagatttaaaaagaaataatgtatgctttttttgtttgtttgtttatttgtttgtttgttttaattgaccaaagtgggtactgctatttttgcagtgtgatgaggtccttttgtgtactgagagatggacaggggattttttttaatatacatatataaatatatatatattccggggtgggtgggaggatttttaaccctttacagtgtagctgtgaagcactgtaccctgagataggtctgggctgcaaagcgactgttctgcctactgtgacaaacttcaacttagacaggttcccctccccctgcccccactttcccccctggggtgcaagctgaactcatttctggttttcaatctaagaaaccaggaagaaaaagcaagcacagcacagcgaagcctcctagaggcagacttagaagaactgccctgtcttattttagttgttgtcgatagtttttcctgaaagttccgaaaccacagtggaaagtgagcctgtctcatctttggcaaagacatttcttgaagtgcccacatagcagatgttggctgtttcacacttttgagtttaacacaggaatacgcttccttctaccaa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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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