2024-04-25 15:19:56, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_031140 1796 bp mRNA linear ROD 23-AUG-2023 DEFINITION Rattus norvegicus vimentin (Vim), mRNA. ACCESSION NM_031140 VERSION NM_031140.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE 1 (bases 1 to 1796) AUTHORS Coelho NR, Tomkiewicz C, Correia MJ, Goncalves-Dias C, Barouki R, Pereira SA, Coumoul X and Monteiro EC. TITLE First evidence of aryl hydrocarbon receptor as a druggable target in hypertension induced by chronic intermittent hypoxia JOURNAL Pharmacol Res 159, 104869 (2020) PUBMED 32416216 REFERENCE 2 (bases 1 to 1796) AUTHORS Liang JR and Yang H. TITLE Ginkgolic acid (GA) suppresses gastric cancer growth by inducing apoptosis and suppressing STAT3/JAK2 signaling regulated by ROS JOURNAL Biomed Pharmacother 125, 109585 (2020) PUBMED 32106377 REFERENCE 3 (bases 1 to 1796) AUTHORS Vakhrusheva A, Endzhievskaya S, Zhuikov V, Nekrasova T, Parshina E, Ovsiannikova N, Popov V, Bagrov D, Minin Acapital A, Cyrillic and Sokolova OS. TITLE The role of vimentin in directional migration of rat fibroblasts JOURNAL Cytoskeleton (Hoboken) 76 (9-10), 467-476 (2019) PUBMED 31626376 REMARK GeneRIF: The role of vimentin in directional migration of rat fibroblasts. REFERENCE 4 (bases 1 to 1796) AUTHORS Zhu WB, Zhao ZF and Zhou X. TITLE AMD3100 inhibits epithelial-mesenchymal transition, cell invasion, and metastasis in the liver and the lung through blocking the SDF-1alpha/CXCR4 signaling pathway in prostate cancer JOURNAL J Cell Physiol 234 (7), 11746-11759 (2019) PUBMED 30537000 REFERENCE 5 (bases 1 to 1796) AUTHORS Al-Kaabi M, Hussam F, Al-Marsoummi S, Al-Anbaki A, Al-Salihi A and Al-Aubaidy H. TITLE Expression of ZO1, vimentin, pan-cadherin and AGTR1 in tanycyte-like cells of the sulcus medianus organum JOURNAL Biochem Biophys Res Commun 502 (2), 243-249 (2018) PUBMED 29803674 REMARK GeneRIF: We labeled brain with ZO1, vimentin, pan-cadherin and angiotensin II type 1 receptors markers which showed a morphologically distinct population of cells at the region of the sulcus medianus organum similar to tanycytes present in the median eminence, a known circumventricular organ. REFERENCE 6 (bases 1 to 1796) AUTHORS Bussemakers MJ, Verhaegh GW, van Bokhoven A, Debruyne FM and Schalken JA. TITLE Differential expression of vimentin in rat prostatic tumors JOURNAL Biochem Biophys Res Commun 182 (3), 1254-1259 (1992) PUBMED 1540169 REFERENCE 7 (bases 1 to 1796) AUTHORS Bussemakers MJ, van Bokhoven A, van Groningen JJ, Debruyne FM and Schalken JA. TITLE Increased expression of retroviral sequences in progressionally advanced rat prostatic tumors JOURNAL Biochem Biophys Res Commun 182 (1), 318-324 (1992) PUBMED 1370615 REFERENCE 8 (bases 1 to 1796) AUTHORS Monteiro MJ and Cleveland DW. TITLE Expression of NF-L and NF-M in fibroblasts reveals coassembly of neurofilament and vimentin subunits JOURNAL J Cell Biol 108 (2), 579-593 (1989) PUBMED 2493000 REFERENCE 9 (bases 1 to 1796) AUTHORS Akoglu,T., Kozakoglu,H. and Akoglu,E. TITLE Antibody to intermediate filaments of the cytoskeleton in patients with Behcet's disease JOURNAL Clin Immunol Immunopathol 41 (3), 427-432 (1986) PUBMED 3780056 REFERENCE 10 (bases 1 to 1796) AUTHORS Kurki,P., Helve,T. and Virtanen,I. TITLE Antibodies to cytoplasmic intermediate filaments in rheumatic diseases JOURNAL J Rheumatol 10 (4), 558-562 (1983) PUBMED 6352937 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from X62952.1. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: X62952.1, BC061847.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA5756307, SAMEA5760383 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on single protein-coding transcript ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..1796 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="Fischer Copenhagen" /db_xref="taxon:10116" /chromosome="17" /map="17q12.3" gene 1..1796 /gene="Vim" /note="vimentin" /db_xref="GeneID:81818" /db_xref="RGD:621646" exon 1..643 /gene="Vim" /inference="alignment:Splign:2.1.0" CDS 81..1481 /gene="Vim" /codon_start=1 /product="vimentin" /protein_id="NP_112402.1" /db_xref="GeneID:81818" /db_xref="RGD:621646" /translation="
MSTRSVSSSSYRRMFGGSGTSSRPSSNRSYVTTSTRTYSLGSALRPSTSRSLYSSSPGGAYVTRSSAVRLRSSMPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQEQHVQIDVDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFALEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISLPLPNFSSLNLRETNLESLPLVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE"
misc_feature 81..179 /gene="Vim" /note="propagated from UniProtKB/Swiss-Prot (P31000.2); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 84..365 /gene="Vim" /note="propagated from UniProtKB/Swiss-Prot (P31000.2); Region: Head" misc_feature 84..86 /gene="Vim" /note="N-acetylserine. /evidence=ECO:0000250|UniProtKB:P08670; propagated from UniProtKB/Swiss-Prot (P31000.2); acetylation site" misc_feature 93..95 /gene="Vim" /note="Phosphoserine. /evidence=ECO:0000250|UniProtKB:P08670; propagated from UniProtKB/Swiss-Prot (P31000.2); phosphorylation site" misc_feature 99..101 /gene="Vim" /note="O-linked (GlcNAc) serine, alternate. /evidence=ECO:0000250; propagated from UniProtKB/Swiss-Prot (P31000.2); glycosylation site" misc_feature 99..101 /gene="Vim" /note="Phosphoserine, by PKA and PKC, alternate. /evidence=ECO:0000250|UniProtKB:P08670; propagated from UniProtKB/Swiss-Prot (P31000.2); phosphorylation site" misc_feature 102..104 /gene="Vim" /note="Phosphoserine. /evidence=ECO:0000250|UniProtKB:P08670; propagated from UniProtKB/Swiss-Prot (P31000.2); phosphorylation site" misc_feature 105..107 /gene="Vim" /note="Phosphoserine, by PKC. /evidence=ECO:0000250|UniProtKB:P08670; propagated from UniProtKB/Swiss-Prot (P31000.2); phosphorylation site" misc_feature 108..110 /gene="Vim" /note="Phosphoserine, by PKC. /evidence=ECO:0000250|UniProtKB:P08670; propagated from UniProtKB/Swiss-Prot (P31000.2); phosphorylation site" misc_feature 120..383 /gene="Vim" /note="Intermediate filament head (DNA binding) region; Region: Filament_head; pfam04732" /db_xref="CDD:428095" misc_feature 138..140 /gene="Vim" /note="Phosphothreonine. /evidence=ECO:0000250|UniProtKB:P08670; propagated from UniProtKB/Swiss-Prot (P31000.2); phosphorylation site" misc_feature 153..155 /gene="Vim" /note="Phosphoserine. /evidence=ECO:0000250|UniProtKB:P20152; propagated from UniProtKB/Swiss-Prot (P31000.2); phosphorylation site" misc_feature 156..158 /gene="Vim" /note="Phosphoserine. /evidence=ECO:0000250|UniProtKB:P20152; propagated from UniProtKB/Swiss-Prot (P31000.2); phosphorylation site" misc_feature 177..179 /gene="Vim" /note="O-linked (GlcNAc) threonine. /evidence=ECO:0000250; propagated from UniProtKB/Swiss-Prot (P31000.2); glycosylation site" misc_feature 180..182 /gene="Vim" /note="O-linked (GlcNAc) serine, alternate. /evidence=ECO:0000250; propagated from UniProtKB/Swiss-Prot (P31000.2); glycosylation site" misc_feature 180..182 /gene="Vim" /note="Phosphoserine, by PKC, alternate. /evidence=ECO:0000250|UniProtKB:P08670; propagated from UniProtKB/Swiss-Prot (P31000.2); phosphorylation site" misc_feature 195..197 /gene="Vim" /note="Phosphoserine, by CaMK2, PKA, PKC and ROCK2. /evidence=ECO:0000250|UniProtKB:P08670; propagated from UniProtKB/Swiss-Prot (P31000.2); phosphorylation site" misc_feature 204..206 /gene="Vim" /note="Phosphoserine, by PKC. /evidence=ECO:0000250|UniProtKB:P08670; propagated from UniProtKB/Swiss-Prot (P31000.2); phosphorylation site" misc_feature 219..221 /gene="Vim" /note="Phosphoserine, by PKA. /evidence=ECO:0000250|UniProtKB:P20152; propagated from UniProtKB/Swiss-Prot (P31000.2); phosphorylation site" misc_feature 225..227 /gene="Vim" /note="Phosphoserine. /evidence=ECO:0000250|UniProtKB:P08670; propagated from UniProtKB/Swiss-Prot (P31000.2); phosphorylation site" misc_feature 231..233 /gene="Vim" /note="Phosphoserine. /evidence=ECO:0007744|PubMed:22673903; propagated from UniProtKB/Swiss-Prot (P31000.2); phosphorylation site" misc_feature 237..239 /gene="Vim" /note="Phosphotyrosine. /evidence=ECO:0000250|UniProtKB:P20152; propagated from UniProtKB/Swiss-Prot (P31000.2); phosphorylation site" misc_feature 243..245 /gene="Vim" /note="Phosphoserine. /evidence=ECO:0000269|PubMed:12686602; propagated from UniProtKB/Swiss-Prot (P31000.2); phosphorylation site" misc_feature 246..248 /gene="Vim" /note="Phosphoserine. /evidence=ECO:0007744|PubMed:22673903; propagated from UniProtKB/Swiss-Prot (P31000.2); phosphorylation site" misc_feature 261..263 /gene="Vim" /note="Phosphotyrosine. /evidence=ECO:0000250|UniProtKB:P08670; propagated from UniProtKB/Swiss-Prot (P31000.2); phosphorylation site" misc_feature 276..278 /gene="Vim" /note="Phosphoserine, by PKA and PKC. /evidence=ECO:0000250|UniProtKB:P20152; propagated from UniProtKB/Swiss-Prot (P31000.2); phosphorylation site" misc_feature 294..296 /gene="Vim" /note="Phosphoserine, by AURKB and ROCK2. /evidence=ECO:0000250|UniProtKB:P08670; propagated from UniProtKB/Swiss-Prot (P31000.2); phosphorylation site" misc_feature 297..299 /gene="Vim" /note="Phosphoserine. /evidence=ECO:0000250|UniProtKB:P08670; propagated from UniProtKB/Swiss-Prot (P31000.2); phosphorylation site" misc_feature 327..329 /gene="Vim" /note="Phosphoserine. /evidence=ECO:0007744|PubMed:22673903; propagated from UniProtKB/Swiss-Prot (P31000.2); phosphorylation site" misc_feature 339..341 /gene="Vim" /note="Phosphoserine. /evidence=ECO:0000250|UniProtKB:P08670; propagated from UniProtKB/Swiss-Prot (P31000.2); phosphorylation site" misc_feature 366..473 /gene="Vim" /note="propagated from UniProtKB/Swiss-Prot (P31000.2); Region: Coil 1A" misc_feature 384..1310 /gene="Vim" /note="Intermediate filament protein; Region: Filament; pfam00038" /db_xref="CDD:425436" misc_feature 429..431 /gene="Vim" /note="Phosphotyrosine. /evidence=ECO:0000250|UniProtKB:P08670; propagated from UniProtKB/Swiss-Prot (P31000.2); phosphorylation site" misc_feature 438..440 /gene="Vim" /note="N6-acetyllysine, alternate. /evidence=ECO:0000250|UniProtKB:P08670; propagated from UniProtKB/Swiss-Prot (P31000.2); acetylation site" misc_feature 465..467 /gene="Vim" /note="N6-acetyllysine, alternate. /evidence=ECO:0000250|UniProtKB:P20152; propagated from UniProtKB/Swiss-Prot (P31000.2); acetylation site" misc_feature 474..539 /gene="Vim" /note="propagated from UniProtKB/Swiss-Prot (P31000.2); Region: Linker 1" misc_feature 495..497 /gene="Vim" /note="N6-acetyllysine, alternate. /evidence=ECO:0000250|UniProtKB:P08670; propagated from UniProtKB/Swiss-Prot (P31000.2); acetylation site" misc_feature 510..512 /gene="Vim" /note="Phosphoserine. /evidence=ECO:0007744|PubMed:22673903; propagated from UniProtKB/Swiss-Prot (P31000.2); phosphorylation site" misc_feature 540..815 /gene="Vim" /note="propagated from UniProtKB/Swiss-Prot (P31000.2); Region: Coil 1B" misc_feature 582..584 /gene="Vim" /note="N6-acetyllysine. /evidence=ECO:0000250|UniProtKB:P20152; propagated from UniProtKB/Swiss-Prot (P31000.2); acetylation site" misc_feature 642..644 /gene="Vim" /note="N6-acetyllysine, alternate. /evidence=ECO:0000250|UniProtKB:P20152; propagated from UniProtKB/Swiss-Prot (P31000.2); acetylation site" misc_feature 720..722 /gene="Vim" /note="Phosphoserine. /evidence=ECO:0007744|PubMed:22673903; propagated from UniProtKB/Swiss-Prot (P31000.2); phosphorylation site" misc_feature 747..749 /gene="Vim" /note="N6-acetyllysine, alternate. /evidence=ECO:0000250|UniProtKB:P20152; propagated from UniProtKB/Swiss-Prot (P31000.2); acetylation site" misc_feature 756..758 /gene="Vim" /note="Phosphoserine. /evidence=ECO:0000250|UniProtKB:P08670; propagated from UniProtKB/Swiss-Prot (P31000.2); phosphorylation site" misc_feature 783..785 /gene="Vim" /note="N6-acetyllysine. /evidence=ECO:0000250|UniProtKB:P20152; propagated from UniProtKB/Swiss-Prot (P31000.2); acetylation site" misc_feature 816..884 /gene="Vim" /note="propagated from UniProtKB/Swiss-Prot (P31000.2); Region: Linker 12" misc_feature 885..1301 /gene="Vim" /note="propagated from UniProtKB/Swiss-Prot (P31000.2); Region: Coil 2" misc_feature 960..962 /gene="Vim" /note="N6-acetyllysine, alternate. /evidence=ECO:0000250|UniProtKB:P20152; propagated from UniProtKB/Swiss-Prot (P31000.2); acetylation site" misc_feature 975..977 /gene="Vim" /note="Phosphoserine. /evidence=ECO:0000250|UniProtKB:P08670; propagated from UniProtKB/Swiss-Prot (P31000.2); phosphorylation site" misc_feature 1053..1055 /gene="Vim" /note="Phosphoserine. /evidence=ECO:0000250|UniProtKB:P20152; propagated from UniProtKB/Swiss-Prot (P31000.2); phosphorylation site" misc_feature 1056..1067 /gene="Vim" /note="propagated from UniProtKB/Swiss-Prot (P31000.2); Region: [IL]-x-C-x-x-[DE] motif. /evidence=ECO:0000250|UniProtKB:P08670" misc_feature 1131..1133 /gene="Vim" /note="Stutter. /evidence=ECO:0000250; propagated from UniProtKB/Swiss-Prot (P31000.2); other site" misc_feature 1197..1199 /gene="Vim" /note="N6-acetyllysine, alternate. /evidence=ECO:0000250|UniProtKB:P08670; propagated from UniProtKB/Swiss-Prot (P31000.2); acetylation site" misc_feature 1302..1478 /gene="Vim" /note="propagated from UniProtKB/Swiss-Prot (P31000.2); Region: Tail" misc_feature 1305..1307 /gene="Vim" /note="Phosphoserine. /evidence=ECO:0000250|UniProtKB:P08670; propagated from UniProtKB/Swiss-Prot (P31000.2); phosphorylation site" misc_feature 1314..1316 /gene="Vim" /note="Phosphoserine. /evidence=ECO:0007744|PubMed:22673903; propagated from UniProtKB/Swiss-Prot (P31000.2); phosphorylation site" misc_feature 1335..1337 /gene="Vim" /note="Phosphoserine. /evidence=ECO:0007744|PubMed:22673903; propagated from UniProtKB/Swiss-Prot (P31000.2); phosphorylation site" misc_feature 1338..1340 /gene="Vim" /note="Phosphoserine. /evidence=ECO:0007744|PubMed:22673903; propagated from UniProtKB/Swiss-Prot (P31000.2); phosphorylation site" misc_feature 1356..1358 /gene="Vim" /note="Phosphothreonine. /evidence=ECO:0000250|UniProtKB:P08670; propagated from UniProtKB/Swiss-Prot (P31000.2); phosphorylation site" misc_feature 1368..1370 /gene="Vim" /note="Phosphoserine. /evidence=ECO:0007744|PubMed:22673903; propagated from UniProtKB/Swiss-Prot (P31000.2); phosphorylation site" misc_feature 1386..1388 /gene="Vim" /note="Phosphothreonine. /evidence=ECO:0000250|UniProtKB:P08670; propagated from UniProtKB/Swiss-Prot (P31000.2); phosphorylation site" misc_feature 1392..1394 /gene="Vim" /note="Phosphoserine. /evidence=ECO:0000250|UniProtKB:P08670; propagated from UniProtKB/Swiss-Prot (P31000.2); phosphorylation site" misc_feature 1413..1415 /gene="Vim" /note="N6-acetyllysine, alternate. /evidence=ECO:0000250|UniProtKB:P08670; propagated from UniProtKB/Swiss-Prot (P31000.2); acetylation site" misc_feature 1416..1418 /gene="Vim" /note="Phosphothreonine. /evidence=ECO:0000250|UniProtKB:P08670; propagated from UniProtKB/Swiss-Prot (P31000.2); phosphorylation site" misc_feature 1452..1454 /gene="Vim" /note="Phosphothreonine. /evidence=ECO:0000250|UniProtKB:P08670; propagated from UniProtKB/Swiss-Prot (P31000.2); phosphorylation site" misc_feature 1455..1457 /gene="Vim" /note="Phosphoserine. /evidence=ECO:0007744|PubMed:22673903; propagated from UniProtKB/Swiss-Prot (P31000.2); phosphorylation site" exon 644..704 /gene="Vim" /inference="alignment:Splign:2.1.0" exon 705..800 /gene="Vim" /inference="alignment:Splign:2.1.0" exon 801..962 /gene="Vim" /inference="alignment:Splign:2.1.0" exon 963..1088 /gene="Vim" /inference="alignment:Splign:2.1.0" exon 1089..1309 /gene="Vim" /inference="alignment:Splign:2.1.0" exon 1310..1353 /gene="Vim" /inference="alignment:Splign:2.1.0" exon 1354..1439 /gene="Vim" /inference="alignment:Splign:2.1.0" exon 1440..1796 /gene="Vim" /inference="alignment:Splign:2.1.0" ORIGIN
gttcacagccactgcgccctcgctctcttcttgcagatcttgcagccgcagcaagccaggccacctcgtccttcgaagccatgtccaccaggtccgtgtcctcgtcctcctaccgcaggatgttcggtggctccggcacatcgagccggcccagctccaaccggagctatgtgaccacatccacccgcacctacagcctaggcagcgcgctgcgccccagcactagccgcagcctctattcctcgtccccgggtggcgcctatgtgacccggtcctccgccgtgcgcctgcggagcagcatgcccggcgtgcggctgctgcaggactccgtggacttctcgctggccgacgccatcaacaccgagttcaagaacacccgcaccaacgagaaggtggaattgcaggagctgaatgaccgcttcgccaactacatcgacaaggtgcgcttcctcgagcagcagaacaaaatcctgctggccgagctcgagcagcttaagggccagggcaagtcgcgcctgggcgacctctacgaggaggagatgagggagttgcgccggcaggtggatcagctcaccaatgacaaggcccgtgtcgaggtggagagggacaacctggccgaggacatcatgcggctgcgagaaaaattgcaggaggagatgctccagagggaggaagccgagagcaccctgcagtcattcagacaggatgttgacaatgcttctctggcacgtcttgaccttgaacgtaaagtggaatccttgcaggaagaaattgcctttttgaagaagctgcacgatgaagagatccaggagctgcaggcccagattcaggaacagcatgtccagatcgatgtggacgtttccaagcctgacctcaccgctgccctgcgtgatgtccgccagcagtatgaaagtgtggctgccaagaacctccaggaggccgaggaatggtacaagtccaagtttgctgacctctctgaggctgccaaccggaacaacgatgccctgcgccaggcaaagcaggagtcaaacgaataccggagacaggtgcagtcactcacctgcgaagtggatgcccttaaaggcactaatgagtccctggagcgccagatgcgtgaaatggaagagaattttgcccttgaagctgctaactaccaggacactattggccgcctgcaggatgagatccagaacatgaaggaagagatggctcgccaccttcgtgaataccaggacctgctcaatgtaaagatggctcttgacattgagatcgccacctacaggaagctgctggaaggggaggagagcaggatttctctgcctcttccaaacttttcttccctgaacctgagagaaactaacctggagtcacttcctctggttgacacccactccaaaagaacactcctgattaagacggttgaaaccagagacggacaggtgatcaatgagacttctcagcaccacgatgaccttgaataaaaactgcacaggctcagtgcaacggcgcagtaccagcaagaaggaaaaaaaaatcgtatcttagaaaaaagagctttcaagtgcctttactgcagttttcaggagcgcaagatagatctgggatagaaacgagctcagcacataacaactgacacccccaaaaggcgtagaaaaggtttacaaaataatctagttttacgaagaaatcttgtgctagaatactttttaaagtatttttgaataccattaaaactgctttctttttccagaaaatatctgaccaacttgttactgcttcaataaaacttcagaaat
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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