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Previous release (v1)
2024-04-19 18:01:16, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_022861 7985 bp mRNA linear ROD 14-JUL-2023
DEFINITION Rattus norvegicus unc-13 homolog A (Unc13a), mRNA.
ACCESSION NM_022861
VERSION NM_022861.2
KEYWORDS RefSeq; RefSeq Select.
SOURCE Rattus norvegicus (Norway rat)
ORGANISM Rattus norvegicus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Rattus.
REFERENCE 1 (bases 1 to 7985)
AUTHORS Li F, Kalyana Sundaram RV, Gatta AT, Coleman J, Ramakrishnan S,
Krishnakumar SS, Pincet F and Rothman JE.
TITLE Vesicle capture by membrane-bound Munc13-1 requires self-assembly
into discrete clusters
JOURNAL FEBS Lett 595 (17), 2185-2196 (2021)
PUBMED 34227103
REMARK GeneRIF: Vesicle capture by membrane-bound Munc13-1 requires
self-assembly into discrete clusters.
REFERENCE 2 (bases 1 to 7985)
AUTHORS Stepien KP and Rizo J.
TITLE Synaptotagmin-1-, Munc18-1-, and Munc13-1-dependent liposome fusion
with a few neuronal SNAREs
JOURNAL Proc Natl Acad Sci U S A 118 (4) (2021)
PUBMED 33468652
REMARK GeneRIF: Synaptotagmin-1-, Munc18-1-, and Munc13-1-dependent
liposome fusion with a few neuronal SNAREs.
REFERENCE 3 (bases 1 to 7985)
AUTHORS Wang X, Gong J, Zhu L, Wang S, Yang X, Xu Y, Yang X and Ma C.
TITLE Munc13 activates the Munc18-1/syntaxin-1 complex and enables
Munc18-1 to prime SNARE assembly
JOURNAL EMBO J 39 (16), e103631 (2020)
PUBMED 32643828
REMARK GeneRIF: Munc13 activates the Munc18-1/syntaxin-1 complex and
enables Munc18-1 to prime SNARE assembly.
REFERENCE 4 (bases 1 to 7985)
AUTHORS Magdziarek M, Bolembach AA, Stepien KP, Quade B, Liu X and Rizo J.
TITLE Re-examining how Munc13-1 facilitates opening of syntaxin-1
JOURNAL Protein Sci 29 (6), 1440-1458 (2020)
PUBMED 32086964
REMARK GeneRIF: Re-examining how Munc13-1 facilitates opening of
syntaxin-1.
REFERENCE 5 (bases 1 to 7985)
AUTHORS Wang S, Li Y, Gong J, Ye S, Yang X, Zhang R and Ma C.
TITLE Munc18 and Munc13 serve as a functional template to orchestrate
neuronal SNARE complex assembly
JOURNAL Nat Commun 10 (1), 69 (2019)
PUBMED 30622273
REMARK GeneRIF: Study data suggest that Munc18-1 and Munc13-1 together
serve as a functional template to orchestrate SNARE complex
assembly.
Publication Status: Online-Only
REFERENCE 6 (bases 1 to 7985)
AUTHORS Sakaguchi G, Orita S, Naito A, Maeda M, Igarashi H, Sasaki T and
Takai Y.
TITLE A novel brain-specific isoform of beta spectrin: isolation and its
interaction with Munc13
JOURNAL Biochem Biophys Res Commun 248 (3), 846-851 (1998)
PUBMED 9704016
REFERENCE 7 (bases 1 to 7985)
AUTHORS Betz A, Ashery U, Rickmann M, Augustin I, Neher E, Sudhof TC,
Rettig J and Brose N.
TITLE Munc13-1 is a presynaptic phorbol ester receptor that enhances
neurotransmitter release
JOURNAL Neuron 21 (1), 123-136 (1998)
PUBMED 9697857
REFERENCE 8 (bases 1 to 7985)
AUTHORS Orita S, Naito A, Sakaguchi G, Maeda M, Igarashi H, Sasaki T and
Takai Y.
TITLE Physical and functional interactions of Doc2 and Munc13 in
Ca2+-dependent exocytotic machinery
JOURNAL J Biol Chem 272 (26), 16081-16084 (1997)
PUBMED 9195900
REFERENCE 9 (bases 1 to 7985)
AUTHORS Betz A, Okamoto M, Benseler F and Brose N.
TITLE Direct interaction of the rat unc-13 homologue Munc13-1 with the N
terminus of syntaxin
JOURNAL J Biol Chem 272 (4), 2520-2526 (1997)
PUBMED 8999968
REFERENCE 10 (bases 1 to 7985)
AUTHORS Brose N, Hofmann K, Hata Y and Sudhof TC.
TITLE Mammalian homologues of Caenorhabditis elegans unc-13 gene define
novel family of C2-domain proteins
JOURNAL J Biol Chem 270 (42), 25273-25280 (1995)
PUBMED 7559667
COMMENT VALIDATED REFSEQ: This record has undergone validation or
preliminary review. The reference sequence was derived from
JACYVU010000275.1.
On Mar 8, 2021 this sequence version replaced NM_022861.1.
Publication Note: This RefSeq record includes a subset of the
publications that are available for this gene. Please see the Gene
record to access additional publications.
##Evidence-Data-START##
Transcript exon combination :: U24070.1 [ECO:0000332]
RNAseq introns :: mixed/partial sample support
SAMD00132261, SAMD00132262
[ECO:0000350]
##Evidence-Data-END##
##RefSeq-Attributes-START##
RefSeq Select criteria :: based on single protein-coding transcript
##RefSeq-Attributes-END##
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-113 JACYVU010000275.1 1731034-1731146 c
114-143 JACYVU010000275.1 1725297-1725326 c
144-243 JACYVU010000275.1 1724637-1724736 c
244-361 JACYVU010000275.1 1722611-1722728 c
362-485 JACYVU010000275.1 1721700-1721823 c
486-559 JACYVU010000275.1 1721389-1721462 c
560-614 JACYVU010000275.1 1721009-1721063 c
615-647 JACYVU010000275.1 1720356-1720388 c
648-855 JACYVU010000275.1 1719020-1719227 c
856-1413 JACYVU010000275.1 1715715-1716272 c
1414-1522 JACYVU010000275.1 1715462-1715570 c
1523-1569 JACYVU010000275.1 1713708-1713754 c
1570-1648 JACYVU010000275.1 1713107-1713185 c
1649-1654 JACYVU010000275.1 1712954-1712959 c
1655-1726 JACYVU010000275.1 1712615-1712686 c
1727-1946 JACYVU010000275.1 1712291-1712510 c
1947-2174 JACYVU010000275.1 1710838-1711065 c
2175-2316 JACYVU010000275.1 1710100-1710241 c
2317-2486 JACYVU010000275.1 1709806-1709975 c
2487-2602 JACYVU010000275.1 1709535-1709650 c
2603-2766 JACYVU010000275.1 1708557-1708720 c
2767-2917 JACYVU010000275.1 1707850-1708000 c
2918-2986 JACYVU010000275.1 1707173-1707241 c
2987-3076 JACYVU010000275.1 1706905-1706994 c
3077-3211 JACYVU010000275.1 1706183-1706317 c
3212-3345 JACYVU010000275.1 1705069-1705202 c
3346-3431 JACYVU010000275.1 1700698-1700783 c
3432-3558 JACYVU010000275.1 1700487-1700613 c
3559-3655 JACYVU010000275.1 1699721-1699817 c
3656-3799 JACYVU010000275.1 1699383-1699526 c
3800-3883 JACYVU010000275.1 1698245-1698328 c
3884-3961 JACYVU010000275.1 1697279-1697356 c
3962-4050 JACYVU010000275.1 1697001-1697089 c
4051-4203 JACYVU010000275.1 1696493-1696645 c
4204-4327 JACYVU010000275.1 1695757-1695880 c
4328-4333 JACYVU010000275.1 1695302-1695307 c
4334-4372 JACYVU010000275.1 1693840-1693878 c
4373-4402 JACYVU010000275.1 1692626-1692655 c
4403-4459 JACYVU010000275.1 1691288-1691344 c
4460-4540 JACYVU010000275.1 1690994-1691074 c
4541-4688 JACYVU010000275.1 1690607-1690754 c
4689-4745 JACYVU010000275.1 1689563-1689619 c
4746-4838 JACYVU010000275.1 1687290-1687382 c
4839-4998 JACYVU010000275.1 1686853-1687012 c
4999-7985 JACYVU010000275.1 1683243-1686229 c
FEATURES Location/Qualifiers
source 1..7985
/organism="Rattus norvegicus"
/mol_type="mRNA"
/strain="BN"
/db_xref="taxon:10116"
/chromosome="16"
/map="16p14"
gene 1..7985
/gene="Unc13a"
/gene_synonym="Munc13-1; Unc13h1"
/note="unc-13 homolog A"
/db_xref="GeneID:64829"
/db_xref="RGD:619722"
exon 1..113
/gene="Unc13a"
/gene_synonym="Munc13-1; Unc13h1"
/inference="alignment:Splign:2.1.0"
CDS 92..5299
/gene="Unc13a"
/gene_synonym="Munc13-1; Unc13h1"
/codon_start=1
/product="protein unc-13 homolog A"
/protein_id="NP_074052.2"
/db_xref="GeneID:64829"
/db_xref="RGD:619722"
/translation="
MSLLCVGVKKAKFDGAQEKFNTYVTLKVQNVKSTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHFELPLDIPEEEARYWAKKLEQLNAMRDQDEYSFQDQQDKPLPVPSSQCCNWNYFGWGEQNDDPDSAVDDRDSDYRSETSNSIPPPYYTTSQPNASVHQYSVRPPPLGSRESYSDSMHSYEEFSEPRALSPTGSSRYASSGELSQGSSQLSEDFDPDEHSLQGSELDDERDRDSYHSCHSSVSYHKDSPRWDQDEEDLEDLEDLEDEELPEEEELEEEELEEEEELEEEELELEEEEEVPDDLASYTQQEDTTVAEPKEFKRISFPTAAPQKEDKVSAVPIEAPDVSKGIPKAATPEEKAAAECAQEAEPPKSEESFRSREAEEGQEGQDAMSRAKANWLRAFNKVRMQLQEARGEGEMSKSLWFKGGPGGGLIIIDSMPDIRKRKPIPLVSDLAMSLVQSRKAGITSALASSTLNNEELKNHVYKKTLQALIYPISCTTPHNFEVWTATTPTYCYECEGLLWGIARQGMRCTECGVKCHEKCQDLLNADCLQRAAEKSSKHGAEDRTQNIIMVLKDRMKIRERNKPEIFELIQEVFAVTKSAHTQQMKAVKQSVLDGTSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVWDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEMDVWYNLDKRTDKSAVSGAIRLHISVEIKGEEKVAPYHVQYTCLHENLFHFVTDVQNNGVVKIPDAKGDDAWKVYYDETAQEIVDEFAMRYGVESIYQAMTHFACLSSKYMCPGVPAVMSTLLANINAYYAHTTASTNVSASDRFAASNFGKERFVKLLDQLHNSLRIDLSMYRNNFPASSPERLQDLKSTVDLLTSITFFRMKVQELQSPPRASQVVKDCVKACLNSTYEYIFNNCHELYGREYQTDPAKKGEVPPEEQGPSIKNLDFWSKLITLIVSIIEEDKNSYTPCLNQFPQELNVGKISAEVMWSLFAQDMKYAMEEHDKHRLCKSADYMNLHFKVKWLYNEYVAELPTFKDRVPEYPAWFEPFVIQWLDENEEVSRDFLHGALERDKKDGFQQTSEHALFSCSVVDVFSQLNQSFEIIKKLECPDPQIVGHYMRRFAKTISNVLLQYADIVSKDFASYCSKEKEKVPCILMNNTQQLRVQLEKMFEAMGGKELDAEASGTLKELQVKLNNVLDELSHVFATSFQPHIEECVRQMGDILSQVKGTGNVPASACSSVAQDADNVLQPIMDLLDSNLTLFAKICEKTVLKRVLKELWKLVMNTMERTIVLPPLTDQTMIGTLLRKHGKGLEKGRVKLPSHSDGTQMIFNAAKELGQLSKLKDHMVREEAKSLTPKQCAVVELALDTIKQYFHAGGVGLKKTFLEKSPDLQSLRYALSLYTQATDLLIKTFVQTQSAQVHGGKGTRFTLSEDVCPEMGSGVEDPVGEVSVHVELFTHPGTGEQKVTVKVVAANDLKWQTSGIFRPFIEVNIVGPQLSDKKRKFATKSKNNSWAPKYNESFQFSLSADAGPECYELQVCVKDYCFAREDRTVGLAVLQLRELAQRGSAACWLPLGRRIHMDDTGLTVLRILSQRSNDEVAKEFVKLKSDTRSAEEGGAAPAP"
misc_feature 92..472
/gene="Unc13a"
/gene_synonym="Munc13-1; Unc13h1"
/note="C2 domain first repeat in Munc13 (mammalian
uncoordinated) proteins; Region: C2A_Munc13; cd08394"
/db_xref="CDD:176040"
misc_feature order(158..160,164..166,170..172,182..193,278..280,
284..286,302..313)
/gene="Unc13a"
/gene_synonym="Munc13-1; Unc13h1"
/note="homodimer interface [polypeptide binding]; other
site"
/db_xref="CDD:176040"
misc_feature 644..1465
/gene="Unc13a"
/gene_synonym="Munc13-1; Unc13h1"
/note="propagated from UniProtKB/Swiss-Prot (Q62768.1);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 806..808
/gene="Unc13a"
/gene_synonym="Munc13-1; Unc13h1"
/note="Phosphoserine.
/evidence=ECO:0007744|PubMed:22673903; propagated from
UniProtKB/Swiss-Prot (Q62768.1); phosphorylation site"
misc_feature 812..814
/gene="Unc13a"
/gene_synonym="Munc13-1; Unc13h1"
/note="Phosphoserine.
/evidence=ECO:0007744|PubMed:22673903; propagated from
UniProtKB/Swiss-Prot (Q62768.1); phosphorylation site"
misc_feature 821..823
/gene="Unc13a"
/gene_synonym="Munc13-1; Unc13h1"
/note="Phosphoserine.
/evidence=ECO:0007744|PubMed:22673903; propagated from
UniProtKB/Swiss-Prot (Q62768.1); phosphorylation site"
misc_feature 854..856
/gene="Unc13a"
/gene_synonym="Munc13-1; Unc13h1"
/note="Phosphoserine.
/evidence=ECO:0007744|PubMed:22673903; propagated from
UniProtKB/Swiss-Prot (Q62768.1); phosphorylation site"
misc_feature 1733..1978
/gene="Unc13a"
/gene_synonym="Munc13-1; Unc13h1"
/note="protein kinase C conserved region 1 (C1 domain)
found in Munc13-2, Munc13-3 and similar proteins; Region:
C1_Munc13-2-like; cd20859"
/db_xref="CDD:410409"
misc_feature order(1790..1792,1829..1831,1838..1840,1880..1882,
1889..1891,1904..1906,1913..1915,1937..1939)
/gene="Unc13a"
/gene_synonym="Munc13-1; Unc13h1"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:410409"
misc_feature order(1805..1825,1847..1861,1868..1870)
/gene="Unc13a"
/gene_synonym="Munc13-1; Unc13h1"
/note="putative DAG/PE binding site [chemical binding];
other site"
/db_xref="CDD:410409"
misc_feature 2156..2536
/gene="Unc13a"
/gene_synonym="Munc13-1; Unc13h1"
/note="C2 domain second repeat in Munc13 (mammalian
uncoordinated) proteins; Region: C2B_Munc13; cd04027"
/db_xref="CDD:175993"
misc_feature order(2204..2206,2222..2224,2360..2362,2366..2368,
2417..2419)
/gene="Unc13a"
/gene_synonym="Munc13-1; Unc13h1"
/note="Ca2+ binding site [ion binding]; other site"
/db_xref="CDD:175993"
misc_feature 3110..4666
/gene="Unc13a"
/gene_synonym="Munc13-1; Unc13h1"
/note="Domain of Unknown Function (DUF1041); Region:
DUF1041; pfam06292"
/db_xref="CDD:428871"
misc_feature 4823..5182
/gene="Unc13a"
/gene_synonym="Munc13-1; Unc13h1"
/note="C2 domain third repeat in Munc13 (mammalian
uncoordinated) proteins; Region: C2C_Munc13; cd08395"
/db_xref="CDD:176041"
exon 114..143
/gene="Unc13a"
/gene_synonym="Munc13-1; Unc13h1"
/inference="alignment:Splign:2.1.0"
exon 144..243
/gene="Unc13a"
/gene_synonym="Munc13-1; Unc13h1"
/inference="alignment:Splign:2.1.0"
exon 244..361
/gene="Unc13a"
/gene_synonym="Munc13-1; Unc13h1"
/inference="alignment:Splign:2.1.0"
exon 362..485
/gene="Unc13a"
/gene_synonym="Munc13-1; Unc13h1"
/inference="alignment:Splign:2.1.0"
exon 486..559
/gene="Unc13a"
/gene_synonym="Munc13-1; Unc13h1"
/inference="alignment:Splign:2.1.0"
exon 560..614
/gene="Unc13a"
/gene_synonym="Munc13-1; Unc13h1"
/inference="alignment:Splign:2.1.0"
exon 615..647
/gene="Unc13a"
/gene_synonym="Munc13-1; Unc13h1"
/inference="alignment:Splign:2.1.0"
exon 648..855
/gene="Unc13a"
/gene_synonym="Munc13-1; Unc13h1"
/inference="alignment:Splign:2.1.0"
exon 856..1413
/gene="Unc13a"
/gene_synonym="Munc13-1; Unc13h1"
/inference="alignment:Splign:2.1.0"
exon 1414..1522
/gene="Unc13a"
/gene_synonym="Munc13-1; Unc13h1"
/inference="alignment:Splign:2.1.0"
exon 1523..1569
/gene="Unc13a"
/gene_synonym="Munc13-1; Unc13h1"
/inference="alignment:Splign:2.1.0"
exon 1570..1648
/gene="Unc13a"
/gene_synonym="Munc13-1; Unc13h1"
/inference="alignment:Splign:2.1.0"
exon 1649..1654
/gene="Unc13a"
/gene_synonym="Munc13-1; Unc13h1"
/inference="alignment:Splign:2.1.0"
exon 1655..1726
/gene="Unc13a"
/gene_synonym="Munc13-1; Unc13h1"
/inference="alignment:Splign:2.1.0"
exon 1727..1946
/gene="Unc13a"
/gene_synonym="Munc13-1; Unc13h1"
/inference="alignment:Splign:2.1.0"
exon 1947..2174
/gene="Unc13a"
/gene_synonym="Munc13-1; Unc13h1"
/inference="alignment:Splign:2.1.0"
exon 2175..2316
/gene="Unc13a"
/gene_synonym="Munc13-1; Unc13h1"
/inference="alignment:Splign:2.1.0"
exon 2317..2486
/gene="Unc13a"
/gene_synonym="Munc13-1; Unc13h1"
/inference="alignment:Splign:2.1.0"
exon 2487..2602
/gene="Unc13a"
/gene_synonym="Munc13-1; Unc13h1"
/inference="alignment:Splign:2.1.0"
exon 2603..2766
/gene="Unc13a"
/gene_synonym="Munc13-1; Unc13h1"
/inference="alignment:Splign:2.1.0"
exon 2767..2917
/gene="Unc13a"
/gene_synonym="Munc13-1; Unc13h1"
/inference="alignment:Splign:2.1.0"
exon 2918..2986
/gene="Unc13a"
/gene_synonym="Munc13-1; Unc13h1"
/inference="alignment:Splign:2.1.0"
exon 2987..3076
/gene="Unc13a"
/gene_synonym="Munc13-1; Unc13h1"
/inference="alignment:Splign:2.1.0"
exon 3077..3211
/gene="Unc13a"
/gene_synonym="Munc13-1; Unc13h1"
/inference="alignment:Splign:2.1.0"
exon 3212..3345
/gene="Unc13a"
/gene_synonym="Munc13-1; Unc13h1"
/inference="alignment:Splign:2.1.0"
exon 3346..3431
/gene="Unc13a"
/gene_synonym="Munc13-1; Unc13h1"
/inference="alignment:Splign:2.1.0"
exon 3432..3558
/gene="Unc13a"
/gene_synonym="Munc13-1; Unc13h1"
/inference="alignment:Splign:2.1.0"
exon 3559..3655
/gene="Unc13a"
/gene_synonym="Munc13-1; Unc13h1"
/inference="alignment:Splign:2.1.0"
exon 3656..3799
/gene="Unc13a"
/gene_synonym="Munc13-1; Unc13h1"
/inference="alignment:Splign:2.1.0"
exon 3800..3883
/gene="Unc13a"
/gene_synonym="Munc13-1; Unc13h1"
/inference="alignment:Splign:2.1.0"
exon 3884..3961
/gene="Unc13a"
/gene_synonym="Munc13-1; Unc13h1"
/inference="alignment:Splign:2.1.0"
exon 3962..4050
/gene="Unc13a"
/gene_synonym="Munc13-1; Unc13h1"
/inference="alignment:Splign:2.1.0"
exon 4051..4203
/gene="Unc13a"
/gene_synonym="Munc13-1; Unc13h1"
/inference="alignment:Splign:2.1.0"
exon 4204..4327
/gene="Unc13a"
/gene_synonym="Munc13-1; Unc13h1"
/inference="alignment:Splign:2.1.0"
exon 4328..4333
/gene="Unc13a"
/gene_synonym="Munc13-1; Unc13h1"
/inference="alignment:Splign:2.1.0"
exon 4334..4372
/gene="Unc13a"
/gene_synonym="Munc13-1; Unc13h1"
/inference="alignment:Splign:2.1.0"
exon 4373..4402
/gene="Unc13a"
/gene_synonym="Munc13-1; Unc13h1"
/inference="alignment:Splign:2.1.0"
exon 4403..4459
/gene="Unc13a"
/gene_synonym="Munc13-1; Unc13h1"
/inference="alignment:Splign:2.1.0"
exon 4460..4540
/gene="Unc13a"
/gene_synonym="Munc13-1; Unc13h1"
/inference="alignment:Splign:2.1.0"
exon 4541..4688
/gene="Unc13a"
/gene_synonym="Munc13-1; Unc13h1"
/inference="alignment:Splign:2.1.0"
exon 4689..4745
/gene="Unc13a"
/gene_synonym="Munc13-1; Unc13h1"
/inference="alignment:Splign:2.1.0"
exon 4746..4838
/gene="Unc13a"
/gene_synonym="Munc13-1; Unc13h1"
/inference="alignment:Splign:2.1.0"
exon 4839..4998
/gene="Unc13a"
/gene_synonym="Munc13-1; Unc13h1"
/inference="alignment:Splign:2.1.0"
exon 4999..7985
/gene="Unc13a"
/gene_synonym="Munc13-1; Unc13h1"
/inference="alignment:Splign:2.1.0"
ORIGIN
cccggtgctgaagcgacatggccggcgaccgggccccagcgtaagctctgagccccgcgctgcgcccgccgcgctctggccgcctggagtcatgtctctgctgtgcgtgggagtcaaaaaagccaagtttgacggtgcccaagagaagttcaacacatacgtgacgctgaaggtgcagaacgtgaagagcactaccatagctgtacgcggcagccagcccagctgggagcaggacttcatgtttgagatcaaccgcctggatctgggcctgacggtggaggtgtggaacaagggtctcatctgggacacaatggtgggtactgtgtggatcccacttcggaccatccgtcagtccaatgaggagggtccgggagaatggctgacactggactctcaggccatcatggcagacagtgagatctgtgggaccaaggaccccaccttccaccgcatcctcctggacgcacattttgagctgcctttggacatccccgaggaggaggcgcgctactgggccaagaagctggagcagctgaatgccatgcgtgaccaagatgagtactcctttcaggaccagcaggacaagccactgccggtgcccagcagccagtgctgcaactggaattactttggctggggagaacagaatgatgatcccgacagtgccgtggatgaccgggacagtgattataggagtgagacgagcaacagcatcccaccgccttactacacgacttcgcagcccaatgcttcggtgcaccagtactccgtgcggccaccccctctggggtcccgggagtcctacagcgactccatgcacagctatgaagagttctctgagccgcgggcactcagccccacaggcagcagccgctatgcttccagtggggagctgagccagggcagctcccagctgagtgaggacttcgacccggatgagcacagcctacagggctcagagctggatgacgagagggaccgagattcttatcactcctgccacagctctgtgagctaccacaaggactcaccccgctgggaccaggatgaggaggacctggaggacctggaggacctggaagatgaggagttgcccgaggaagaggagttggaagaggaggagttggaggaggaggaggagttggaggaagaggaattggagttggaggaggaggaggaggtgcctgatgacctggccagctatacccagcaggaggacaccactgtggctgagcccaaagagttcaagcggatcagcttcccaacagctgcacctcagaaggaagacaaagtttcagctgtgcccattgaggcccccgatgtgtccaaaggcatccccaaggcagccacacctgaagagaaggcagctgcggagtgtgcacaggaagcagagccccccaagtctgaggagagtttcagatctcgagaggctgaggagggccaggaagggcaggatgccatgtccagggccaaagccaactggttgcgagccttcaacaaggtgcgcatgcagctgcaggaggcccgaggagaaggagagatgtccaagtctctgtggttcaaaggcggccctggtggtggccttatcatcattgacagcatgccagacatcaggaagcggaagcccattcccctcgtgagcgacctggctatgtctctggtccagtcacggaaggcgggcatcacctcggccttggcctccagcacgttgaacaatgaagagttgaaaaaccacgtttacaagaagaccctgcaagccttaatctaccccatctcctgcaccacgccgcacaacttcgaggtgtggacggccaccactcccacctactgctacgagtgcgaggggctgctgtggggcatcgcgcggcagggcatgcgctgcaccgagtgcggcgttaagtgccacgagaagtgccaagacctgctcaacgcggactgcctgcagcgggcggctgagaagagttctaagcatggcgctgaagaccgcacgcagaacatcatcatggtgctgaaggaccgcatgaagatccgcgagcgcaacaagcctgagatcttcgagctgatccaggaggtcttcgcggtcaccaagagcgcacacacacagcagatgaaggccgtcaagcagagtgtgctggatggcacatccaagtggtctgccaaaattagcatcacggtggtctgtgcccagggcttgcaggccaaggacaagacaggatccagtgacccttatgtcaccgtccaggttgggaagaccaagaaaaggacaaaaaccatctacgggaaccttaacccagtgtgggaagagaatttccactttgaatgtcacaactcctctgaccggatcaaggtgcgtgtgtgggatgaagacgatgacatcaaatcccgtgtgaagcaaaggtttaagagggagtctgatgacttcctagggcagacaatcatcgaggtgcggacgcttagcggcgagatggatgtgtggtacaatctggacaagagaacagacaagtctgctgtgtcgggcgccattcggcttcacatcagtgtggagatcaaaggggaggagaaggtggcaccctaccatgtccagtacacctgtctgcatgagaacctgttccattttgtgacggatgtacagaacaatggcgtggtgaagattcccgatgccaaaggtgacgacgcctggaaggtttactatgatgagactgcccaggagatcgtggatgagtttgccatgcgctatggcgttgaatccatctaccaagccatgacccactttgcctgcctctcctccaagtacatgtgccctggggtacccgctgtcatgagcaccctgcttgccaacatcaacgcctactacgcacacaccaccgcctccaccaacgtgtctgcctccgaccgcttcgctgcctccaatttcgggaaagagcgctttgtgaaacttctggaccagctgcacaactccctgcggattgacctgtccatgtaccggaacaacttcccggccagcagccccgagcggctgcaggatctcaagtccacagtggacctgcttaccagcatcaccttcttccggatgaaggttcaggaactgcagagtccgccacgtgccagtcaggtggtgaaggactgcgtgaaggcgtgcctcaactccacctacgagtacatcttcaacaactgtcatgagctctatggccgggagtaccagacagacccggccaagaagggggaggtccccccggaggagcaaggccctagcatcaagaacctggatttctggtccaagctcatcaccctcatcgtgtctatcattgaggaggataagaactcctacacaccctgcctcaatcagtttccccaggagctgaatgtggggaagatcagtgctgaggtgatgtggagcctgtttgcccaggacatgaagtacgccatggaggaacacgacaagcaccggctgtgtaagagcgcagactacatgaacctgcatttcaaggtcaagtggttgtacaacgagtacgtggctgaactgcccaccttcaaggaccgcgtgccggagtaccctgcgtggtttgagcccttcgtcatccagtggttagatgagaatgaggaggtgtcccgggacttcctgcatggtgcactcgagcgggacaagaaggatgggttccagcagacatcggagcacgccctgttctcttgctcggtagtggacgtcttctcccagctcaaccagagctttgagatcatcaagaagctggagtgtcctgacccccagattgtgggccactacatgcggcgctttgccaagaccattagcaatgtgcttctccagtacgccgacatcgtctccaaggacttcgcttcctactgctccaaggagaaggagaaagtgccctgcatcctcatgaacaacacacagcagctgcgggtgcagctggagaagatgttcgaggcgatgggtgggaaggagctggacgccgaggccagtggaaccctgaaggagctgcaggtgaaactcaacaatgtcctggatgaactcagccacgtgtttgccaccagcttccagccacacatcgaggagtgtgtcagacaaatgggtgacatcctaagccaagtgaagggcacgggcaacgtgcccgccagtgcctgcagcagcgtggcacaggacgcggacaacgtgctacagcccatcatggatcttctggacagcaacctcaccctgtttgccaaaatctgtgagaagacggttctgaagcgggtgctgaaggagctgtggaagctggtgatgaacaccatggagaggaccatcgtcctgccgccactcactgaccagacgatgattggtaccctcttgagaaaacatggcaagggcctagaaaagggcagggtgaaactgccaagccactcagacgggacacaaatgatcttcaatgccgccaaggagctgggccagctgtccaaactgaaggatcacatggtgcgagaagaagccaagagcttgaccccgaagcagtgtgccgtggttgaactggccctggacaccatcaagcaatacttccacgcggggggcgtgggcctcaagaagacctttctcgagaaaagcccggaccttcagtccctgcgctacgccctgtcgctctacacacaggccaccgacctgctcatcaaaaccttcgtgcagacgcagtcagcgcaggtccatggtggaaaggggactaggtttacccttagtgaagacgtttgtcctgagatgggctcgggtgtggaagaccctgtaggtgaagtatccgtccacgtggagctgttcacgcatccgggaactggggaacagaaggtcacagtgaaggtggtggccgccaacgacctcaagtggcagacttctggcatcttccgtccgttcattgaggtcaacatcgttggacctcagctcagcgacaagaaacgaaagttcgccaccaaatcgaaaaacaacagctgggcgcccaaatataacgagagcttccagttctccctgagcgccgacgcgggacccgagtgctacgagttgcaggtgtgcgtgaaggactactgcttcgcgcgcgaggaccgcacggtggggctggcggtgctgcagctgcgggagctggctcagcgcgggagcgccgcgtgctggctgccgctcggccgccgcatccacatggacgacacggggctcacagtgctgcgtatcctgtcgcagcgcagcaatgacgaggtggccaaggagttcgtcaagctcaagtccgacacgcgctcggccgaggagggcggtgccgcgcctgcgccctagcgcgcgttttggcggcggggcggggcctgggaagggatgaggtcccgccttccgtaggccaccgcctctccagaggccacgcccctccacctcagtggccttggctggggaggccctgccccctgcccctggaaaagccatagagggtccggtgcccagggcatggactgggcagggctgcctgggaggctgggtcgcagcctctggtgtctgcaaaatacagggcgggatggactctcaaaagcacacgcgccctcggcgcacagctggggctgcgggcacccctctccgcggaccccgccctcagcagcgggcccactggcagctggcgaccccctgctcgtgtcacacagggcgggctgagctccgacgaatggcccagcccccatcgctgctaaataaccattcagaatcttcctgattcttccgggaggtcccgcaggccagggaccctcactgaaccctcaggctgccaaacaagattcctgtccttgctcttctttctgagactttagtcggaaccggcctagtcaagaaggggggcgttggagttttcccggagccaagagccccccattccgccttttctccaaatccaggcaggaaataacagagagaccagaaactaggaaagagggagagattgagaatatgaacgtgcatttctgagggtcctgtgcttgtggtagtgggacgtcccttttctacttggcttgaaccacagcatgtttcctgaatgtcacgtgcagtgacaggatagcatgcaggctctcatatatgatccaggtttcatccatggagctcagaggttacataccatacattgatgggggactcatagtggagctcaggagggagtgagtgactttcactttaggacatctaacatgcctaaagggaaagtggtctgaacagagatcactcatagaaagtttctacattgctggcattgtgtgacatgtgcaagtgcgtgcgcgtgcacgagtgcgagtgcgtgtgttttccagccctagaatgttgaagaaagtacattggaagtgtttgtctagtgaattgtcctgactcccaggctaggactgtttgaaatttcactttatttacccagagacctcctattcattcttcaaccctcattacaaaaatcctccccgacccgtacaaaagaatttctcaaggacttccccagcttattcttgcccttctctgatttggccctgacgtcatgagactagggtgtctatgcctggttctgtttctcctaatccccagcctcacttcacaggagccccaaattccacagcataagcaggtcacagtaattgaaggaagattgtgccaacttgaattatgtgttgagaatggctgaggggtctgcatgtgacccccaattcacacgcacgtttttcattacagtttcttctgacttgacggacatccctatgtgggaggtgtccaagctgagccccaggacacaaaagaaggaagcagagcagagggccgagctctgatctcaggacagccccagatataacaacgtcctgaaaggaagttactccagggcctggccttctgagctctcaccacctcccctggcggcccatcgctgctggagtcctgcattaaagcacactggggtgcagctccagtccccacacgccagggatggttagagactggtctgcagcaggctggaatgagccacagccccacccgcaggagaggcaggactctgagaggcagatgccagggggtgagggaggctacagtgtgggcagaagggggaggcaggaagagcaggtggaaggatctggggtccaggctcatttataccctacctagaattcctcagttagggggctggggcgtgactcagcacctgccactcatgcattgttctaggttcatttcccaacactgaaaaatcgaaaaggtcctgcatcagctcaccatgtctgggcgattcagcacttgaagggtcgccctctgcaccccagtccgtttcaggccccagggcctgtcgcctcacctgccccatcagacatgcaaaaaatcaagtgcactcagaactcctggggacctctcccagcctggactgcagacctgtcaggtcccaagggcggccctgctgggggtggggtaaggggtggggttggcctggctccgcccacccccaccccagcatctttcaggaccaaagctggctctgcagacctgtctccctctcctttttgccttttattattttaaaaagtgaattcagttgagctgtttagtccgacccttctcagccacagctgctgtgttgacgcaagtgacaagcgagggtcccctgcaccccagaaggttcttgacccctacccctgccacgcagcccagggaggccctctgactcgcctttcttagcatgtgattgcaaaggtagaatcccagcgtcgtgcttctggtttggttttttgggttcttttttttcttttggaggatttttttaagtatcaccccgttagtctagcatctttcaagatgccctcaattctcagtcaacacgtgacttgggacacatgttcaaaatacccggggagtgttcatgagtgcatggcgttgagatgttttgcactattctgaatttttggtctctgtaaaaaatattttattaacattaaaaaagaaagaaaaagaaaaaaacaca
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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