LOCUS       NM_001437728           10385 bp    mRNA    linear   ROD 11-APR-2025
DEFINITION  Rattus norvegicus RIKEN cDNA D430041D05 gene like (D430041D05Rikl),
            transcript variant 2, mRNA.
ACCESSION   NM_001437728 XM_039106456
VERSION     NM_001437728.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from JAXUCZ010000003.1.
            
            On Apr 9, 2025 this sequence version replaced XM_039106456.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360194.335128.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-683               JAXUCZ010000003.1  111236541-111237223 c
            684-1028            JAXUCZ010000003.1  111083561-111083905 c
            1029-1640           JAXUCZ010000003.1  111080352-111080963 c
            1641-1756           JAXUCZ010000003.1  111077941-111078056 c
            1757-1976           JAXUCZ010000003.1  111073746-111073965 c
            1977-2110           JAXUCZ010000003.1  111072829-111072962 c
            2111-2273           JAXUCZ010000003.1  111065427-111065589 c
            2274-2333           JAXUCZ010000003.1  111063316-111063375 c
            2334-2485           JAXUCZ010000003.1  111057954-111058105 c
            2486-2657           JAXUCZ010000003.1  111054501-111054672 c
            2658-2821           JAXUCZ010000003.1  111044888-111045051 c
            2822-3006           JAXUCZ010000003.1  111037534-111037718 c
            3007-3134           JAXUCZ010000003.1  111030726-111030853 c
            3135-3316           JAXUCZ010000003.1  111026628-111026809 c
            3317-3534           JAXUCZ010000003.1  111023016-111023233 c
            3535-3664           JAXUCZ010000003.1  111015737-111015866 c
            3665-4015           JAXUCZ010000003.1  110984930-110985280 c
            4016-4113           JAXUCZ010000003.1  110975222-110975319 c
            4114-4262           JAXUCZ010000003.1  110973431-110973579 c
            4263-4414           JAXUCZ010000003.1  110971256-110971407 c
            4415-10385          JAXUCZ010000003.1  110961478-110967448 c
FEATURES             Location/Qualifiers
     source          1..10385
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q32"
     gene            1..10385
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /note="RIKEN cDNA D430041D05 gene like"
                     /db_xref="GeneID:100362814"
                     /db_xref="RGD:2323964"
     exon            1..683
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    437..439
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /note="upstream in-frame stop codon"
     CDS             449..4696
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /note="isoform 2 is encoded by transcript variant 2"
                     /codon_start=1
                     /product="UPF0606 protein KIAA1549L homolog isoform 2"
                     /protein_id="NP_001424657.1"
                     /db_xref="GeneID:100362814"
                     /db_xref="RGD:2323964"
                     /translation="

MALQEAKPQGPSKAGPAAREPRDRPREPGLCGAGGIAARCQGVKSSGARGSEDVLPLRPLLLGLLLLAALSGNCRADSGADNLQTHVTPTSESFPLGKLLPISPTWPFLEVKSSSAADRIKNVLGQPPDNTTLTQLSQTPLPKAHRKTRAHVDFSSSLYQGSGHSASLDLAKDPTETLVQTRPEGGREAADMSVETSVSSKGELSATVAAAATTTLFLRKSSPAPLSAALTAKGTGGGGSLAKSSLTTALAKNVTNKAAPGPKVTAGTVHTAFPFTPTYMLARTAHSLSTHTAMQGASGSVSGLLSTTHLPKKPQAMHTGLPNPTRPDTPRASTPRPLTITAALTSLTASVKATRLPSLQTGNTDAAFPAVSTAMVTTGRMASNLDCQMSHKFLVKTVFFLTQRRIQSSESLKLGVTKGLTQALRKAFHQNDVSAHVDILEYSHNVTVGYYATKGRLVYLPAVVMDVLGVYGVSNVTADLKQHAPNLQSVAVLASPWKPQPAGAFQLKTVLQFVSQSDNIQSCRFAQTMEQRLQKAFQDAERKVLGTRSNLTVQIVSTSNASQAVTLVYAVGNQSSFLNGTMASSLLSQLSAELVGFYLTYPPLTIAEPLEYPNLDTSETTRDYWVITVLQGVDNSLVGLHNQSFARVMEQRLAQLFMMSQQQGRRFKRATTLGSYTVQMVKMQRVPGPKDPAELTYYTLYNGKPLLGTAAAKILSTIDSQRMALTLHHVVLLQADPVVKNPPNNLWIIAAVLAPIAVVTIIIIIITAVLCRKNKNDFKPDTMINLPQRAKPVQGFDYAKQHLGQQGADEEVIPVTQETVVLPIPVRDTPQERDTAQDGSTIKTAKSTETRKSRSPSENGSVISNESGKPSSGRCSPQNGMTQQKVTKEESRKRNGTASDEEEGAGLFDSAGKAAADPFDTSSGSVQLIAIKPSALPVVHPASDRGPESSAALNGEVSKALKQKSDIEHYRNKLRLKAKRKGYYDFPPVDAGKGLTERKKMYEKAPKEMEHALEPDPELCAPFAESKNRQQMKNSVYRSRQSLNSPSPGETEMDLLVTRERPRRGIRNSGYDTEPEIIEETNVDRVHEPRGYGRARQMKGHSETSTLSSQPSIDEVRQQMHMLLEEAFSLASAGHAGQSRHQEAYGSTQHLPYSEVVTSAPGTMTRPRAGVQWVPTYRPEMYQYSLPRPAYRFSQLPEMVMGSPPPPVPPRTGPVAVASLRRSTSDIGSKTRMAESTGPEATQLHDSASFAQVSRGPVSVTQLDQSALNYSGNTVPAVFAIPAANRPGFTGYFIPTPPPSYRSQAWMSYAGDSELPSQWADSVPLPGYIEAYPRSRYQQSSPSRLPRQYSQPTNLHPSLEQAPVPSAAASQQSLTENEPPDTPLTNISTAALVKAIREEVAKLAKKQTDMFEFQV"

     exon            684..1028
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /inference="alignment:Splign:2.1.0"
     exon            1029..1640
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /inference="alignment:Splign:2.1.0"
     exon            1641..1756
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /inference="alignment:Splign:2.1.0"
     exon            1757..1976
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /inference="alignment:Splign:2.1.0"
     exon            1977..2110
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /inference="alignment:Splign:2.1.0"
     exon            2111..2273
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /inference="alignment:Splign:2.1.0"
     exon            2274..2333
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /inference="alignment:Splign:2.1.0"
     exon            2334..2485
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /inference="alignment:Splign:2.1.0"
     exon            2486..2657
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /inference="alignment:Splign:2.1.0"
     exon            2658..2821
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /inference="alignment:Splign:2.1.0"
     exon            2822..3006
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /inference="alignment:Splign:2.1.0"
     exon            3007..3134
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /inference="alignment:Splign:2.1.0"
     exon            3135..3316
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /inference="alignment:Splign:2.1.0"
     exon            3317..3534
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /inference="alignment:Splign:2.1.0"
     exon            3535..3664
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /inference="alignment:Splign:2.1.0"
     exon            3665..4015
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /inference="alignment:Splign:2.1.0"
     exon            4016..4113
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /inference="alignment:Splign:2.1.0"
     exon            4114..4262
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /inference="alignment:Splign:2.1.0"
     exon            4263..4414
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /inference="alignment:Splign:2.1.0"
     exon            4415..10385
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gtcaatgaggcgccgctctgagctgcagtagcattcgcggctggagccggagtccagcgatccagtgaaccgacagggacagagacccgggcgcaggggcggcggcgggcggcacgctgcacgagccaggtccgcgggtccccacgtctcgtagcctcgcgctcgaggtgcagcatccggccccggggaggggaccagggcgccgcccgtcccaccctcgccataccgtgggaacccccatgcaaccccggtacccgcgcgcctgaaaccccggctccgttgagcccgcctccgaccgaggcaggacgagcgagcagctcgcacctcctgcctccctccgactcccgggccatggcccgagatgcccggtgaggaacggtgcgcggagggctgggctcccgggcgcggcgtggaaagaggcagcggcctggatgtatgaacagtccctatggctctgcaggaggcgaagccccagggcccgagcaaagctgggccggcggcgcgggagcccagggatcggccccgggagccagggctctgcggggcgggcgggatcgccgcgcgctgccagggcgtgaagagctccggggcccgcggctccgaggatgtgctgccgctgcggccgctgctgctgggactcttgctgctggctgccctctccgggaactgccgggccgactcgggggcagacaatctacagacacatgtcactccgacctcagagtcctttccccttgggaaattgttaccaatttcaccaacatggcctttcttggaagtcaagtcttcctcagcagcggacagaatcaagaatgtgctgggacagcctcctgacaacacaaccttgacacagctatcccagacacctctgcccaaggcacaccgtaagaccagggctcatgtggacttctcctcatccctttaccaaggaagtggacatagcgcctccctggatcttgccaaggaccccactgagactctggtccaaacaaggcctgaagggggaagagaagcagcggacatgtcagtggaaacctcagtgtcctccaagggagaactgtcagccaccgtagcagcagccgccaccaccacactgtttctgaggaaatcaagtccagcgccactgtctgcagcccttactgctaagggcactggcggtggcggcagcttagccaagagcagtctgaccactgctctagctaaaaatgtcaccaacaaggcagcaccaggcccaaaggtgacagcagggacagtccacacagccttcccattcacaccaacctacatgcttgcccggacagcacacagcctgagcactcacacagccatgcaaggggcctcaggctctgtgtcaggcctgttgtccacaacacacctccccaagaagccccaagccatgcacactggcctccctaatcctaccaggccagacacacccagagcatccacaccccgcccactgacaatcacagccgcgctgacgtcccttacagcatccgtaaaggccactagactgccttctttgcagacaggaaacacagatgctgcttttccggctgtgtctactgcaatggtcacaactggcaggatggcatccaacttggactgtcagatgtcccacaagttcctcgtgaagacagttttcttcctaactcagaggagaatacagagcagtgagtccttgaagcttggtgtaaccaaagggctcacacaagcattgcggaaggctttccaccagaatgacgtctccgctcacgtggacattctggaatattctcataatgtcacagttggctattatgctaccaaagggaggctggtgtatttgccggctgtggtgatggacgtgctgggtgtgtatggagtcagcaacgtcacggccgatctgaagcagcacgctcccaacttacagtctgtggcagtgcttgcctccccatggaagccccagcctgcaggtgccttccagctgaagacagtgctgcagtttgtaagccagtcagacaacatccagtcctgcaggtttgcccagacaatggagcagaggctgcagaaggcattccaggatgcagagaggaaggtcctcggcaccaggagcaacctgacagttcagatcgtgagcacgtccaatgcctcccaagccgtcacactggtgtatgctgtgggcaatcagagctccttcctcaacggcaccatggccagcagcctccttagccagctctcagctgagctggtaggattctacctcacctaccctccactcaccatcgctgaaccactggaatatcccaaccttgacacatcagaaacaaccagagactactgggtcatcacagtgctccagggtgtggacaactcgctggtgggtctgcacaaccagagctttgcccgggtcatggagcagcgcctggctcagctgttcatgatgtcccagcaacagggtcggcggtttaaacgtgctaccaccttgggaagctacactgtgcagatggtgaagatgcagcgagtgccaggaccgaaggacccggcggagctgacctactacacgctgtacaatgggaagccactgctggggactgcagcagccaagatcctgagcaccattgactcccagaggatggccctgaccctgcatcacgtcgtcctgctgcaagctgaccccgtggtaaagaacccacccaacaacctgtggatcatcgctgcagtgctggctcccatcgccgtggtcaccatcatcatcatcatcatcactgccgtgctctgtaggaagaacaagaacgacttcaagccagacaccatgataaacctgcctcagagagcaaagcctgtgcaaggctttgactacgccaagcagcatctgggccagcaaggggcagatgaggaggtcatccctgtgactcaggaaacggtggtcctccccatacctgtcagagatactcctcaggaaagagacacggctcaggatggcagtaccatcaagacggctaagtccactgaaaccagaaagagcaggtcgcccagtgagaatggctctgtcatcagcaacgaatcagggaagcccagctcagggaggtgctcaccccagaatggaatgacacagcagaaagtgacaaaggaggagtccaggaagagaaatgggacagcaagcgatgaagaggagggagcaggtctctttgacagtgctggcaaggcggcagcggatccctttgacacatcttctggatccgtgcagctcatagctatcaaaccgtcagctctgccggtagtgcaccccgcctcagacaggggcccggagtcttcagcggcgctcaacggcgaggtgagcaaggctctaaagcagaagtcagacatcgagcactatcggaacaagctacgcctgaaagccaagaggaaggggtactatgacttccccccagtggatgcagggaaaggcctaacagaaagaaaaaagatgtacgaaaaggccccaaaagaaatggagcatgctttggaaccagacccagaactgtgtgctcctttcgcagagtccaagaacaggcaacagatgaagaactcagtctaccgaagccggcagtctctgaacagcccgagtcccggagaaactgagatggaccttctggtcacacgggagcgaccccggcgtggaatccggaacagcggatacgacactgagcccgagatcatagaagagaccaacgtggacagagtccatgagccccggggctacggcagagcacggcagatgaagggccactcggagacctccacactgagctcgcagccttccatcgacgaagtccggcaacagatgcacatgcttctggaggaagccttcagcctggcgtctgctggccacgcgggccaaagccggcaccaggaggcctacggctccactcagcacctgccatactcagaggtggtgaccagtgctccagggaccatgacacggcccagggctggagtgcagtgggtgcccacctaccgaccagaaatgtaccaatacagcctgccccggccggcttacaggttctcccagcttcctgaaatggtcatgggcagtcccccccctcctgttcctccccggacaggccctgtggcagtggcttccctcaggcggtccacctcagacatcggcagcaagacccggatggcggagtccacaggacctgaggccacacagttgcatgacagtgcctcctttgcccaggtgtccagaggtcctgtgtccgtgacgcagctggatcagtcggcgttaaattattcaggtaacacggtgccagcggtgtttgccatcccagctgccaacagacccggcttcaccggctacttcatcccaactccaccgccgtcctacaggagccaggcctggatgtcctatgcaggagacagtgagctccctagccagtgggctgattcggtccctcttcctgggtacattgaggcctacccccggtcacgttatcaacagagctccccctccaggctccctcgccagtatagccagccaaccaaccttcaccccagcctagagcaggctcctgtgccctctgcagcggcctcacagcaaagcctgacagaaaatgagcctccagacactccgttgactaacatctccactgcggcccttgtgaaggctatccgagaggaggtagccaagttggccaagaagcagacagatatgtttgagttccaggtctaatgcctcaactctgaggggatcttcccttaaagactgtgaggcagccaacaggctttgggtttctctcccctaatgtgtggaggcgccagatgattaaaaaaacagtagacaagctctttctcaccctcggattctgagagtcaacagtggggcttctggaaatcaggaaacttgtaaacaactggattctgacttctgcagccaattgtgggtcaacaagtccctaactgggaccctgtgcttgatattctgttgggctgaatgtttggactgtgggtggaatgtccctgaggagccctagttc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