2024-04-29 14:55:43, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001414936 3635 bp mRNA linear ROD 23-MAR-2023 DEFINITION Rattus norvegicus RAS protein activator like 3 (Rasal3), transcript variant 1, mRNA. ACCESSION NM_001414936 XM_006241059 VERSION NM_001414936.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE 1 (bases 1 to 3635) AUTHORS Saito S, Kawamura T, Higuchi M, Kobayashi T, Yoshita-Takahashi M, Yamazaki M, Abe M, Sakimura K, Kanda Y, Kawamura H, Jiang S, Naito M, Yoshizaki T, Takahashi M and Fujii M. TITLE RASAL3, a novel hematopoietic RasGAP protein, regulates the number and functions of NKT cells JOURNAL Eur J Immunol 45 (5), 1512-1523 (2015) PUBMED 25652366 REFERENCE 2 (bases 1 to 3635) AUTHORS Buschow SI, van Balkom BW, Aalberts M, Heck AJ, Wauben M and Stoorvogel W. TITLE MHC class II-associated proteins in B-cell exosomes and potential functional implications for exosome biogenesis JOURNAL Immunol Cell Biol 88 (8), 851-856 (2010) PUBMED 20458337 REFERENCE 3 (bases 1 to 3635) AUTHORS Ghosh D, Lippert D, Krokhin O, Cortens JP and Wilkins JA. TITLE Defining the membrane proteome of NK cells JOURNAL J Mass Spectrom 45 (1), 1-25 (2010) PUBMED 19946888 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JACYVU010000177.1. On Dec 15, 2022 this sequence version replaced XM_006241059.4. ##Evidence-Data-START## RNAseq introns :: mixed sample support SAMD00132291, SAMD00132301 [ECO:0006172] ##Evidence-Data-END## ##RefSeq-Attributes-START## inferred exon combination :: based on alignments, homology RefSeq Select criteria :: based on conservation, expression, longest protein ##RefSeq-Attributes-END## COMPLETENESS: full length. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-501 JACYVU010000177.1 6569795-6570295 c 502-641 JACYVU010000177.1 6566354-6566493 c 642-720 JACYVU010000177.1 6566149-6566227 c 721-782 JACYVU010000177.1 6565993-6566054 c 783-853 JACYVU010000177.1 6562873-6562943 c 854-980 JACYVU010000177.1 6562359-6562485 c 981-1079 JACYVU010000177.1 6562178-6562276 c 1080-1616 JACYVU010000177.1 6561238-6561774 c 1617-1761 JACYVU010000177.1 6560650-6560794 c 1762-1906 JACYVU010000177.1 6559875-6560019 c 1907-2143 JACYVU010000177.1 6558858-6559094 c 2144-2345 JACYVU010000177.1 6558560-6558761 c 2346-2464 JACYVU010000177.1 6558350-6558468 c 2465-2855 JACYVU010000177.1 6557205-6557595 c 2856-3013 JACYVU010000177.1 6556850-6557007 c 3014-3077 JACYVU010000177.1 6556160-6556223 c 3078-3635 JACYVU010000177.1 6555502-6556059 c FEATURES Location/Qualifiers source 1..3635 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN" /db_xref="taxon:10116" /chromosome="7" /map="7q11" gene 1..3635 /gene="Rasal3" /gene_synonym="RGD1309019" /note="RAS protein activator like 3" /db_xref="GeneID:314596" /db_xref="RGD:1309019" exon 1..501 /gene="Rasal3" /gene_synonym="RGD1309019" /inference="alignment:Splign:2.1.0" CDS 117..3233 /gene="Rasal3" /gene_synonym="RGD1309019" /note="isoform 1 is encoded by transcript variant 1" /codon_start=1 /product="RAS protein activator like-3 isoform 1" /protein_id="NP_001401865.1" /db_xref="GeneID:314596" /db_xref="RGD:1309019" /translation="
MKTECGQTTRRSVTFWSCSRDSAMDPPLQNEDSQTQPSPLTSYRWHTGGRGEKIAGGFRWGRFAGWGRALSHQEPMVSSQPAPRSLFRRVLSAPPKESRPNRLRFSKSLWGRHKNVVPLEPKLNPKAPEPELELEGAPDLRAAHIPEPPAPDMPVWNIDGFALLEGRLVMLGEEEGPRQIRMGSASSESSMQAALGNLKDPVRTPGKIEPEATGSNQVHNVRKLLKRLKEKKRAKSELGAHTPRDGPSSALGSRESLATLSELDLGVERDVRVWPLHPSLLGEPYCFQVTWAGGSRCFSCRSSAERDRWIEDLRRQFQPSQDNVERQETWLTVWVHEAKGLPRAAAPGVRAELWLDGALLARTAPRAGPDQLFWAERFHFEALPPARRLSLRLRGAGPAGATVGRVVLELDEVSIPRAPAAGLERWFPVLGAPAGAVLRARIRVRCLRVLPSERYKELAEFLTFHYARLCMALEPALSAQAKEELAAAMVRVLRATGRAQALVTDLGTAELERCGGREALLFRENTLATKAIDEYMKLVAQEYLQETLGQVVRSLCASTEDCEVDPSKCPTPELPKCQARLRSSCEEVFENIIHSYNYFPAELGTVFSNWREACKARGSEALGPRLVCASLFLRLLCPAILAPSLFGLAPEHPAPGPARTLTLIAKVIQNLANCAPFGEKEAYMVFMNSFLEDHGPAMRHFLDQVAMVDTDTTPSGYQGSGDLALQLAVLHVQLCTIFAELDQKTRDSLEPLPTILQAIEEGRPVPVSVPMRLPLNTAHVQSSFSSGEKPGFLAPRDLPKHTPLISKSQSLRSFQGAGSWARRRPDGERPQRRPRPVLRTQSVPARRPTHHRPAAGSKPRPKGSLRTGPATSGRAWARTSTSLPRKPSVPWQRQLDQPGDRYQTPGTHRPVGKLAEIQCEVAALREEQKALSHLVESLSTHIQALTEQQEQLRCQLQDLDSRLGAGISKLDSKGGLPSNGSLGLKSLEHRMTEMECSQNQLRDTLQSLQLLSKTPGSRSQPPPLKAPCVNGADLSMGT"
misc_feature 714..1154 /gene="Rasal3" /gene_synonym="RGD1309019" /note="Pleckstrin homology-like domain; Region: PH-like; cl17171" /db_xref="CDD:450165" misc_feature 1071..1469 /gene="Rasal3" /gene_synonym="RGD1309019" /note="C2 domain; Region: C2; cl14603" /db_xref="CDD:449331" misc_feature 1443..2414 /gene="Rasal3" /gene_synonym="RGD1309019" /note="Ras-GTPase Activating Domain of DAB2IP and similar proteins; Region: RasGAP_DAB2IP; cd05136" /db_xref="CDD:213338" misc_feature order(1560..1562,1671..1673,1677..1679,1683..1688, 1692..1694,1701..1703,1713..1715,1989..1991,2013..2018, 2025..2030,2037..2039,2100..2102,2109..2114,2121..2123, 2133..2135,2139..2141,2154..2159) /gene="Rasal3" /gene_synonym="RGD1309019" /note="putative RAS interface [polypeptide binding]; other site" /db_xref="CDD:213338" exon 502..641 /gene="Rasal3" /gene_synonym="RGD1309019" /inference="alignment:Splign:2.1.0" exon 642..720 /gene="Rasal3" /gene_synonym="RGD1309019" /inference="alignment:Splign:2.1.0" exon 721..782 /gene="Rasal3" /gene_synonym="RGD1309019" /inference="alignment:Splign:2.1.0" exon 783..853 /gene="Rasal3" /gene_synonym="RGD1309019" /inference="alignment:Splign:2.1.0" exon 854..980 /gene="Rasal3" /gene_synonym="RGD1309019" /inference="alignment:Splign:2.1.0" exon 981..1079 /gene="Rasal3" /gene_synonym="RGD1309019" /inference="alignment:Splign:2.1.0" exon 1080..1616 /gene="Rasal3" /gene_synonym="RGD1309019" /inference="alignment:Splign:2.1.0" exon 1617..1761 /gene="Rasal3" /gene_synonym="RGD1309019" /inference="alignment:Splign:2.1.0" exon 1762..1906 /gene="Rasal3" /gene_synonym="RGD1309019" /inference="alignment:Splign:2.1.0" exon 1907..2143 /gene="Rasal3" /gene_synonym="RGD1309019" /inference="alignment:Splign:2.1.0" exon 2144..2345 /gene="Rasal3" /gene_synonym="RGD1309019" /inference="alignment:Splign:2.1.0" exon 2346..2464 /gene="Rasal3" /gene_synonym="RGD1309019" /inference="alignment:Splign:2.1.0" exon 2465..2855 /gene="Rasal3" /gene_synonym="RGD1309019" /inference="alignment:Splign:2.1.0" exon 2856..3013 /gene="Rasal3" /gene_synonym="RGD1309019" /inference="alignment:Splign:2.1.0" exon 3014..3077 /gene="Rasal3" /gene_synonym="RGD1309019" /inference="alignment:Splign:2.1.0" exon 3078..3635 /gene="Rasal3" /gene_synonym="RGD1309019" /inference="alignment:Splign:2.1.0" ORIGIN
acagacggctgctggttctggactggccaggaaatcaaggtaagagagggtgtacgtgtggcaccctcaagtgtgttctgtcctttggaggcaaagctgagaagagactggggaagatgaagacagaatgtgggcagacaacgcgcagaagtgtcaccttttggtcttgtagcagagactccgccatggacccaccgctgcagaatgaagattcccaaacgcagccctcgccgctgacgtcctatcgttggcacactggaggcagaggggagaagattgctggagggttccgctggggccgcttcgcaggctggggaagggccctgagccatcaggagcccatggtgagcagccagccagcccctagatctctgtttcgtcgggtcctctctgcacctcctaaggagtcacgacccaatcgcctccggttttccaagagcctgtgggggaggcacaagaacgtggtaccgctggaacccaagctaaatccgaaggccccagagccagagctggagttggagggagccccagacctgcgcgctgcacatatccctgagcctcccgcccctgacatgcctgtttggaacattgatggctttgccctgctcgaaggaagactggtgatgctcggtgaggaggagggtcctcgccaaatccgaatgggaagtgccagctcggaaagcagcatgcaggcagccttggggaacctcaaagacccagttcggactcctgggaaaattgagccggaagctactggttccaaccaggtccacaatgttcggaagttactcaagaggctgaaggagaagaaaagggccaagtcggaactgggagcccacactcctcgagatggaccctccagtgctcttggttccagagaatcgctggccacactctctgagctggacctaggcgttgagagggatgtgagagtctggccgctgcatcctagcctcctgggggagccatattgcttccaggtaacgtgggcaggtgggagccgctgtttctcttgtcgctcgagcgctgagagagaccgttggattgaggaccttcgtcggcagttccagcctagccaggacaatgtggaacgacaagagacctggctgacagtgtgggtgcacgaagccaaagggcttccccgagcagctgcacccggagtgcgtgcggagctgtggttggacggcgcgctactggcgcgcactgcccctcgggcgggccctgaccaactcttctgggccgaacgcttccacttcgaggcgttgccacctgcccgtcgcctgtcgctgcggctgcgcggagcaggcccggcaggggcaaccgtgggcagggtggtactagaactggacgaggtgagcatcccccgcgcgcctgccgcaggcctggagcgctggttccccgtgctcggggctccggcgggtgcggtgctacgggcgcggatcagggtacgatgtctgcgcgtgctgccgtcggagcgctataaggagttagcggagttcctcaccttccactacgcgcgcctgtgcatggcgctggagcccgcgctgtctgctcaggccaaggaggagctggcagcagccatggtgcgcgtgctacgagccactggccgagcgcaggcattggtgacagacctaggaaccgcagagctggagcgctgtggaggccgtgaagcgctgctattccgagaaaataccttagccacaaaggccattgatgaatacatgaaactggtggcacaggagtacctccaggagaccctgggccaggttgtgcggagtctctgtgcctccaccgaggactgtgaagtggaccccagcaagtgcccaacaccggagctgccaaaatgccaagctagactgcgaagcagttgtgaggaggtttttgaaaacatcatccactcttacaactatttcccagcagagctgggcaccgtgttctcaaattggcgggaagcatgcaaagcacgaggctctgaggcactgggcccccggctggtgtgtgcttctctcttcctaaggctcctatgccccgccatcttggcacctagcctctttggcctggcaccagagcaccccgccccaggcccagccagaactcttacactcatcgccaaggtcatccagaatcttgccaactgtgctccgtttggtgagaaggaagcctacatggtctttatgaatagcttcctggaagatcatggaccggccatgcgacacttcctggatcaggtagctatggtggacacagataccacacccagtggctaccagggaagtggagacctggccctccagttggcagttcttcatgtccagctctgcacaatctttgctgaacttgaccagaaaactcgagacagcttggaaccactacccaccatccttcaagccattgaggagggtcggcctgtcccagtgtctgtaccaatgcgtcttcccctgaacactgctcatgtccaatccagcttctcttcaggggagaaacccggcttcctggcaccccgagacctccccaagcacactcctctcatttccaagagccagtctttgcgcagctttcaaggggcaggaagctgggcccgtcggcggccagatggggagcggccccagcggcggccgcggccagtgctgcgcacacagagcgtccctgccagacgccctacccaccatcgccctgctgcgggttccaagcctcgacccaaaggctctctacgcactggtcctgcgacttccggacgggcctgggctaggacttccacctctctacctcggaagccatcggtgccttggcagcgccaactggaccagcccggggaccgataccaaactccgggaacgcaccgaccagtgggcaagctagcagagatacaatgcgaggtagctgcactccgcgaggaacagaaagccctgtcccatctggtggagtcgctgagtacccacatccaggccttgacggagcagcaagagcagctccgctgtcagctgcaggatctggactccagactgggagctgggatctcaaagttggattctaagggtggtctcccaagcaacggtagcctcgggctgaaaagtctggagcaccgcatgactgagatggaatgttctcagaaccagctgagggataccctccaaagcctacagcttctttcaaaaactccaggatctcggagccagcccccgcctctcaaagcaccatgtgtcaatggagctgatctgtcgatgggcacctgagtatttcaccccactccatacagtctggaagccaggagagccactacagaggattttctgactacctcagtccttcatggcccttagtaggggacagagtgggaggtgtcaatcactctggtaactgtgaggttgcccagtaaatctccatttcagaaaatcactggtttctctgcccctacaaagattaatgcaagagcatacccagttctctactcagctcccccaaattcttacctaatttgaagtctcccgaagatgaaaatgattagcaaaattgtcctcactattggtgtgatctaaggtcatcactctaaaagactccattctctcttctgtatctaaaaattctctgcatagttaaaggtattcaataaaaggtatttatcattgttgtgggaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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