LOCUS       NM_001412903            1123 bp    mRNA    linear   ROD 20-OCT-2022
DEFINITION  Rattus norvegicus transmembrane protein 40 (Tmem40), transcript
            variant 1, mRNA.
ACCESSION   NM_001412903
VERSION     NM_001412903.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JACYVU010000149.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN06680447
                              [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            CDS uses downstream in-frame AUG :: upstream AUG and CDS extension
                                                is not conserved
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-36                JACYVU010000149.1  1142097-1142132     c
            37-117              JACYVU010000149.1  1127641-1127721     c
            118-192             JACYVU010000149.1  1123828-1123902     c
            193-246             JACYVU010000149.1  1121056-1121109     c
            247-282             JACYVU010000149.1  1119478-1119513     c
            283-315             JACYVU010000149.1  1118903-1118935     c
            316-363             JACYVU010000149.1  1118570-1118617     c
            364-435             JACYVU010000149.1  1116442-1116513     c
            436-510             JACYVU010000149.1  1116269-1116343     c
            511-573             JACYVU010000149.1  1115703-1115765     c
            574-1123            JACYVU010000149.1  1114354-1114903     c
FEATURES             Location/Qualifiers
     source          1..1123
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q42"
     gene            1..1123
                     /gene="Tmem40"
                     /gene_synonym="RGD1306976"
                     /note="transmembrane protein 40"
                     /db_xref="GeneID:680858"
                     /db_xref="RGD:1587025"
     exon            1..36
                     /gene="Tmem40"
                     /gene_synonym="RGD1306976"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    18..20
                     /gene="Tmem40"
                     /gene_synonym="RGD1306976"
                     /note="upstream_AUG_codon; putative N-terminal extension:
                     MSPGTPGKE"
     exon            37..117
                     /gene="Tmem40"
                     /gene_synonym="RGD1306976"
                     /inference="alignment:Splign:2.1.0"
     CDS             45..593
                     /gene="Tmem40"
                     /gene_synonym="RGD1306976"
                     /note="isoform 1 is encoded by transcript variant 1"
                     /codon_start=1
                     /product="transmembrane protein 40 isoform 1"
                     /protein_id="NP_001399832.1"
                     /db_xref="GeneID:680858"
                     /db_xref="RGD:1587025"
                     /translation="

MEASGSSSQSPNSSAVHRETEDLNHSSDEDKHSRGPRKHRRKSHRDSSPGADHGELEVLKDELQLYGGAAGEMVLAGESGLRRRGSGSAEGEVEASQLNRLNIKKDDEFFHFVLLCFAIGALLVCYHYYSDWFMSLGVGLLTFASLETIGIYFGLVYRIHSVLQGFIPLLQKFRLPGFRRTN"

     misc_feature    228..587
                     /gene="Tmem40"
                     /gene_synonym="RGD1306976"
                     /note="Transmembrane protein 40 family; Region: TMEM40;
                     pfam15817"
                     /db_xref="CDD:374141"
     exon            118..192
                     /gene="Tmem40"
                     /gene_synonym="RGD1306976"
                     /inference="alignment:Splign:2.1.0"
     exon            193..246
                     /gene="Tmem40"
                     /gene_synonym="RGD1306976"
                     /inference="alignment:Splign:2.1.0"
     exon            247..282
                     /gene="Tmem40"
                     /gene_synonym="RGD1306976"
                     /inference="alignment:Splign:2.1.0"
     exon            283..315
                     /gene="Tmem40"
                     /gene_synonym="RGD1306976"
                     /inference="alignment:Splign:2.1.0"
     exon            316..363
                     /gene="Tmem40"
                     /gene_synonym="RGD1306976"
                     /inference="alignment:Splign:2.1.0"
     exon            364..435
                     /gene="Tmem40"
                     /gene_synonym="RGD1306976"
                     /inference="alignment:Splign:2.1.0"
     exon            436..510
                     /gene="Tmem40"
                     /gene_synonym="RGD1306976"
                     /inference="alignment:Splign:2.1.0"
     exon            511..573
                     /gene="Tmem40"
                     /gene_synonym="RGD1306976"
                     /inference="alignment:Splign:2.1.0"
     exon            574..1123
                     /gene="Tmem40"
                     /gene_synonym="RGD1306976"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

ctcgcattgctgctcacatgagcccagggactccagggaaagagatggaggcttcaggatcttcttctcagtctccaaacagcagtgcggtccacagagaaacagaagatctaaaccacagcagcgatgaggacaagcactccagaggtccgaggaaacacagaaggaagtcgcacagagacagctctcctggtgctgaccatggggaactggaggtgctgaaggacgagcttcagctctatggaggcgctgctggggaaatggtgcttgctggggagtcaggactccgaaggagaggttccggctcagcggagggagaagtggaggcctctcagttaaacagactgaacataaagaaggatgatgagtttttccattttgtccttctctgcttcgccattggagccttgctggtgtgctaccactactattcagactggttcatgtctcttggggttggtctgctcaccttcgcttctctggagaccatcggcatctacttcgggctggtgtaccggatccacagcgtacttcagggcttcatccccctccttcagaagttcaggctgccagggttcaggagaaccaactgagatcactgcccgacagcagctgagccagtccccaatgtgaccactgtaaccactgccaaacctgagcccagaatacagagtgacatgctggaagacactaggaggccacacaacaaagagctctttccttccgtgtgatctgagtgtcagctgatctgagtgggcaagctcttgttctgcagattagcacacagtctccatggggaagagagaaggcacagcatctgggtcagcaagaaagagctgggatgccattgctctcaggggtagcatgagtcttgggccttgcaggctggcatcttcgggcttgggtatctctggtgtcctcaggccatgctcatgaactcacagttccagcagagccatcttgggacagctatcctgaggcagggagctaccaggctgggtccccaggggaacctgcagataagatactggggaccaaagctgtagaccatcacccagtgaccaaccctgttgcccttggacttctaaaacccaaataaatattctattccctgtgctaaaaa

//