LOCUS       NM_001399272            1514 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus ring finger protein 122 (Rnf122), transcript
            variant 2, mRNA.
ACCESSION   NM_001399272 XM_039095093
VERSION     NM_001399272.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1514)
  AUTHORS   Peng,Z., Shi,T. and Ma,D.
  TITLE     RNF122: a novel ubiquitin ligase associated with calcium-modulating
            cyclophilin ligand
  JOURNAL   BMC Cell Biol 11, 41 (2010)
   PUBMED   20553626
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1514)
  AUTHORS   Wang,L., Gao,X., Gao,P., Deng,W., Yu,P., Ma,J., Guo,J., Wang,X.,
            Cheng,H., Zhang,C., Yu,C., Ma,X., Lv,B., Lu,Y., Shi,T. and Ma,D.
  TITLE     Cell-based screening and validation of human novel genes associated
            with cell viability
  JOURNAL   J Biomol Screen 11 (4), 369-376 (2006)
   PUBMED   16751333
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000016.1.
            
            On Jan 5, 2022 this sequence version replaced XM_039095093.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360176.353332.1,
                                           SRR22582416.1562137.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760386,
                                           SAMN06621351 [ECO:0006172]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-127               JAXUCZ010000016.1  67727249-67727375   c
            128-284             JAXUCZ010000016.1  67724145-67724301   c
            285-330             JAXUCZ010000016.1  67717817-67717862   c
            331-372             JAXUCZ010000016.1  67717518-67717559   c
            373-455             JAXUCZ010000016.1  67714245-67714327   c
            456-1514            JAXUCZ010000016.1  67712936-67713994   c
FEATURES             Location/Qualifiers
     source          1..1514
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /map="16q12.3"
     gene            1..1514
                     /gene="Rnf122"
                     /gene_synonym="RGD1561238"
                     /note="ring finger protein 122"
                     /db_xref="GeneID:502091"
                     /db_xref="RGD:1561238"
     exon            1..127
                     /gene="Rnf122"
                     /gene_synonym="RGD1561238"
                     /inference="alignment:Splign:2.1.0"
     CDS             19..570
                     /gene="Rnf122"
                     /gene_synonym="RGD1561238"
                     /note="isoform 2 is encoded by transcript variant 2"
                     /codon_start=1
                     /product="RING finger protein 122 isoform 2"
                     /protein_id="NP_001386201.1"
                     /db_xref="GeneID:502091"
                     /db_xref="RGD:1561238"
                     /translation="

MVNVERILALFQHQIFLWQDEGRRLLAVEGGPVGPEGCFCGLGLVSTNKSCSMPPISFQDLPLNIYMVIFGTGIFVFMLSLIFCCYFISKLRNQAQSERYGYKEVVLKGDAKKLQLYGQTCAVCLEDFKGKDELGVLPCQHAFHRKCLVKWLEVRCVCPMCNKPIAGPTETSQSIGILLDELV"

     misc_feature    373..513
                     /gene="Rnf122"
                     /gene_synonym="RGD1561238"
                     /note="RING finger, H2 subclass, found in RING finger
                     protein 122 (RNF122) and similar proteins; Region:
                     RING-H2_RNF122; cd16676"
                     /db_xref="CDD:438338"
     misc_feature    order(379..381,388..390,433..435,439..441,448..450,
                     457..459,490..492,499..501)
                     /gene="Rnf122"
                     /gene_synonym="RGD1561238"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:438338"
     exon            128..284
                     /gene="Rnf122"
                     /gene_synonym="RGD1561238"
                     /inference="alignment:Splign:2.1.0"
     exon            285..330
                     /gene="Rnf122"
                     /gene_synonym="RGD1561238"
                     /inference="alignment:Splign:2.1.0"
     exon            331..372
                     /gene="Rnf122"
                     /gene_synonym="RGD1561238"
                     /inference="alignment:Splign:2.1.0"
     exon            373..455
                     /gene="Rnf122"
                     /gene_synonym="RGD1561238"
                     /inference="alignment:Splign:2.1.0"
     exon            456..1514
                     /gene="Rnf122"
                     /gene_synonym="RGD1561238"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

aaggtacacagaagagccatggtaaatgtggagaggattttggccctctttcagcatcagatatttctgtggcaggacgaaggaaggaggctactggcagtagaaggaggtcctgttggtcctgaagggtgtttctgtggcctggggctggtgagtaccaacaagtcctgctcaatgccaccaatcagtttccaggaccttcccctcaacatctacatggtcatcttcggcactggcatctttgtctttatgctcagtctcatcttctgctgctacttcatcagcaaactccggaaccaggcacagagcgagcgatacggctacaaggaggtggtgcttaaaggtgatgctaagaagttacagctctatgggcagacctgtgcagtttgtctggaagacttcaaggggaaggatgaactaggtgtgcttccgtgccagcatgcctttcaccgcaagtgtctggtgaagtggctagaagtgcgttgcgtctgccccatgtgcaacaagcccattgctggccccacggagacctcacagagcattgggatcctgctggatgaattggtgtaagcgctccttgcgtgcggatactggagaagactgctgactttgcgggcacctgggttccgctacacaaggaacaagattcacactcacctataggcagggatgacagagctgcccttctaccatcaccactggaccagtaccagacttgtccagtgtctgcctcccagggcttctctctgttatacatttccaatggcctcatccaggtagactactctatcctggtactggactgactatccatccacccgcctcatctgggaaggagtcaactctgtgactgtgaacatgggcacttccctttggagaacgagcaactctgaccttgaaagggtcacccctctgtcccacccacgtccttcactcctgccagagccttccatgggatggtttccaggggaaaggaaagaaagatcaagacacgaagatgaaaggctctgtgtaaagtaaaggaaggcagggacctaaaaaagggaaaagtcaatgtttacacgagatgtcggaaacaaaggccagcctcgtcctggccgactacagggtgatgggaccaaccctcccctggtaggatctgaggtgctattcattctctccctggccctggttgatctcagagccgtctagtcacggttggttttgttttgaagagactcctctctataggaaggggtctaatcctcaagtccactttcaggggctttttttttagaagcaaaacgggcctcgggatggggatggtcgggagggtacagtaatgcggatgtctgcttcctctctgtaaatagtatttttatacttcttcaccatctcaggcttacacatgcggccctgcaggatggagggggtggagtgttcccttcctcctcgcctgagcagggcggctgagagtgggaaaaggttatgtatttaaagaaaattaaatttaataacatgtttctctaatcaaa

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