2024-04-27 04:03:08, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001395739 1833 bp mRNA linear ROD 31-DEC-2022 DEFINITION Rattus norvegicus LRR binding FLII interacting protein 2 (Lrrfip2), transcript variant 2, mRNA. ACCESSION NM_001395739 XM_006243957 VERSION NM_001395739.1 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE 1 (bases 1 to 1833) AUTHORS Dai P, Jeong SY, Yu Y, Leng T, Wu W, Xie L and Chen X. TITLE Modulation of TLR signaling by multiple MyD88-interacting partners including leucine-rich repeat Fli-I-interacting proteins JOURNAL J Immunol 182 (6), 3450-3460 (2009) PUBMED 19265123 REFERENCE 2 (bases 1 to 1833) AUTHORS Fong KS and de Couet HG. TITLE Novel proteins interacting with the leucine-rich repeat domain of human flightless-I identified by the yeast two-hybrid system JOURNAL Genomics 58 (2), 146-157 (1999) PUBMED 10366446 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JACYVU010000200.1. On Aug 3, 2021 this sequence version replaced XM_006243957.2. ##Evidence-Data-START## Transcript exon combination :: FQ233539.1, SRR8487230.154838.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00132261, SAMD00132262 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-272 JACYVU010000200.1 14050275-14050546 273-344 JACYVU010000200.1 14051803-14051874 345-488 JACYVU010000200.1 14069582-14069725 489-575 JACYVU010000200.1 14087092-14087178 576-620 JACYVU010000200.1 14115951-14115995 621-737 JACYVU010000200.1 14117449-14117565 738-809 JACYVU010000200.1 14120488-14120559 810-980 JACYVU010000200.1 14128741-14128911 981-1073 JACYVU010000200.1 14133573-14133665 1074-1206 JACYVU010000200.1 14141449-14141581 1207-1256 JACYVU010000200.1 14143136-14143185 1257-1377 JACYVU010000200.1 14146689-14146809 1378-1457 JACYVU010000200.1 14149544-14149623 1458-1562 JACYVU010000200.1 14150705-14150809 1563-1833 JACYVU010000200.1 14151379-14151649 FEATURES Location/Qualifiers source 1..1833 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN" /db_xref="taxon:10116" /chromosome="8" /map="8q32" gene 1..1833 /gene="Lrrfip2" /note="LRR binding FLII interacting protein 2" /db_xref="GeneID:301035" /db_xref="RGD:1306234" exon 1..272 /gene="Lrrfip2" /inference="alignment:Splign:2.1.0" exon 273..344 /gene="Lrrfip2" /inference="alignment:Splign:2.1.0" exon 345..488 /gene="Lrrfip2" /inference="alignment:Splign:2.1.0" misc_feature 387..389 /gene="Lrrfip2" /note="upstream in-frame stop codon" CDS 399..1673 /gene="Lrrfip2" /note="isoform 2 is encoded by transcript variant 2; leucine-rich repeat flightless-interacting protein 2; LRR FLII-interacting protein 2; leucine rich repeat (in FLII) interacting protein 2" /codon_start=1 /product="leucine-rich repeat flightless-interacting protein 2 isoform 2" /protein_id="NP_001382668.1" /db_xref="GeneID:301035" /db_xref="RGD:1306234" /translation="
MGTPGSGRKRTPVKDRFSAEDEALSNIAREAEARLAAKRAARAEARDIRMRELERQQRELDEKSDKQYAENYTRPSSRNSASATTPLSGNSSRRGSGDTSSLIDPDTSLSELRDIYDLKDQIHDVEGRYMQGLKELKESLSEVEEKYKKAMVSNAQLDNEKNNLIYQVDTLKDVIEEQEEQMAEFYRENEEKSKELERQKHMCSVLQHKMDELKEGLRQRDELIEKHGLVIIPESTPNGDVNHEPVVGAITAVSQEAAQVLESAGEGPLDVRLRKLAEEKDELLSQIRKLKLQLEEERQKCSRNDGMSGDLAGLQNGSDLQFIEMQRDANRQISEYKFKLSKAEQDIATLEQSISRLEGQVLRYKTAAENAEKIEDELKAEKRKLQRELRTAQDKIEEMEMTNSHLAKRLEKMKANRTALLAQQ"
misc_feature 537..1445 /gene="Lrrfip2" /note="LRRFIP family; Region: LRRFIP; pfam09738" /db_xref="CDD:430789" misc_feature 1389..>1670 /gene="Lrrfip2" /note="Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]; Region: Smc; COG1196" /db_xref="CDD:224117" exon 489..575 /gene="Lrrfip2" /inference="alignment:Splign:2.1.0" exon 576..620 /gene="Lrrfip2" /inference="alignment:Splign:2.1.0" exon 621..737 /gene="Lrrfip2" /inference="alignment:Splign:2.1.0" exon 738..809 /gene="Lrrfip2" /inference="alignment:Splign:2.1.0" exon 810..980 /gene="Lrrfip2" /inference="alignment:Splign:2.1.0" exon 981..1073 /gene="Lrrfip2" /inference="alignment:Splign:2.1.0" exon 1074..1206 /gene="Lrrfip2" /inference="alignment:Splign:2.1.0" exon 1207..1256 /gene="Lrrfip2" /inference="alignment:Splign:2.1.0" exon 1257..1377 /gene="Lrrfip2" /inference="alignment:Splign:2.1.0" exon 1378..1457 /gene="Lrrfip2" /inference="alignment:Splign:2.1.0" exon 1458..1562 /gene="Lrrfip2" /inference="alignment:Splign:2.1.0" exon 1563..1833 /gene="Lrrfip2" /inference="alignment:Splign:2.1.0" ORIGIN
ccctctgccccgccaccgccgcagctgcagccgccgctcgggctgcggctcatcccgggttgcgttcgccgtgtcggccgcggcgcgaagggcgccctgagtgtgactacacggtcgtccgcagcgcgaggagcccttcttttgcctccctgcggcccgcggggtggacggtgcggggacagagtgtggccgccgctcccctctcccggctccggagcggccgatctggcccttccgggcggcgccgcagcctcatcccgcgccacacgcagatgtgggaagacaaatgaagggatttagaaaccaaataaatgccagtggaaaggagagctaccatcactaagtgctgaacacgagtaaactcattttcagagttaaaaaattattaaaaaaacaagatggggactcctggttctggaaggaaaagaacaccagtgaaagatcgattttctgcagaagatgaagctttgagtaacatcgccagagaggctgaagcaaggctagcagcaaagcgggccgccagggcagaagcaagagacatccgcatgagggaactggaacgacagcagagagagttggatgaaaaatctgacaaacagtatgctgaaaattacacaagaccctcatctcgaaattctgcgtcagcaacaacacctctaagcggaaactcatccagacggggtagtggggacaccagtagtttaatagacccagacacctcgttaagtgaactgcgggacatctatgacctgaaggaccagatacatgatgtagaagggagatacatgcaggggcttaaggaactgaaggagtctttgtctgaagtagaagagaagtacaagaaagccatggtgtccaatgcacaactagacaacgagaagaacaatctgatctaccaggtggacaccctcaaggacgtcatcgaggagcaggaggagcagatggcagagttctatagagaaaacgaagagaaatcaaaggagttggaacggcagaaacatatgtgcagtgtgctgcagcataagatggatgaactgaaagagggccttcggcagagggacgagctcatcgagaagcacggcttagttataatcccagagagtactcccaatggcgacgtcaatcatgagcctgtggttggagccattactgctgtgtctcaggaagctgctcaggtcttggagtcagcaggagaagggccactagatgtgaggctgcggaagcttgctgaggaaaaggacgagctcctgtcacagattagaaaactgaagctccagttagaggaagaacggcagaagtgttccaggaatgatggcatgtccggggacctggcagggctgcagaacggctccgacttgcagttcatcgagatgcagagagacgccaatagacaaattagtgaatacaaattcaagctttcgaaagcagaacaagacatagctaccttggaacaaagtatcagccggcttgaggggcaggtgctgaggtacaagactgccgctgagaacgctgagaagattgaagacgagctgaaagcagagaagaggaagctacagcgagagctacggacagcacaggacaagatcgaggagatggagatgaccaacagccacctggcaaagcggctagagaagatgaaggccaacaggacagcccttctagcccagcagtaggaggcagcccctccacctgggtgctgctctgagggctttgctgggagatactgactcttgtacattgacacagccccttccagtactgttttgagtcttgtcattaaacagccacctttgtattttataatttatgagaatgaagcaggtttaatcgtta
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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