ver.2
Home
|
Help
|
Advanced search
Previous release (v1)
2024-04-20 20:29:39, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001395021 2483 bp mRNA linear ROD 15-DEC-2023
DEFINITION Rattus norvegicus zinc finger protein 120 like 2 (Zfp120l2), mRNA.
ACCESSION NM_001395021 XM_039084897
VERSION NM_001395021.1
KEYWORDS RefSeq; RefSeq Select.
SOURCE Rattus norvegicus (Norway rat)
ORGANISM Rattus norvegicus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Rattus.
COMMENT VALIDATED REFSEQ: This record has undergone validation or
preliminary review. The reference sequence was derived from
JACYVU010000215.1.
On May 26, 2021 this sequence version replaced XM_039084897.1.
##Evidence-Data-START##
RNAseq introns :: single sample supports all introns SAMD00132291,
SAMD00132293 [ECO:0000348]
##Evidence-Data-END##
##RefSeq-Attributes-START##
RefSeq Select criteria :: based on single protein-coding transcript
##RefSeq-Attributes-END##
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-145 JACYVU010000215.1 47005909-47006053
146-272 JACYVU010000215.1 47020414-47020540
273-333 JACYVU010000215.1 47020730-47020790
334-2483 JACYVU010000215.1 47021933-47024082
FEATURES Location/Qualifiers
source 1..2483
/organism="Rattus norvegicus"
/mol_type="mRNA"
/strain="BN"
/db_xref="taxon:10116"
/chromosome="9"
/map="9q38"
gene 1..2483
/gene="Zfp120l2"
/note="zinc finger protein 120 like 2"
/db_xref="GeneID:102551714"
/db_xref="RGD:7659002"
exon 1..145
/gene="Zfp120l2"
/inference="alignment:Splign:2.1.0"
misc_feature 53..55
/gene="Zfp120l2"
/note="upstream in-frame stop codon"
CDS 143..2122
/gene="Zfp120l2"
/note="zinc finger protein 431-like; zinc finger protein
709-like; zinc finger protein 120-like"
/codon_start=1
/product="zinc finger protein 120 like 2"
/protein_id="NP_001381950.1"
/db_xref="GeneID:102551714"
/db_xref="RGD:7659002"
/translation="
MDALTYDDVHVNFTREEWALLDPSQKSLYKDVMQETYRNLSAIGYNWEDHTIEEHCQSFRRHGRHERCHTGEKPSENTQCGKAFAQRSHLQRHNRTRTGEKLYESKPRDKAFTYDSQLQNLERIHTGEKPYKCNQCGKAFERHCNLGRHKLIHTGRKSYKCNQCGKAFSQNSHLQTHNSTHSREELYKCKQCGKSFTCRNELQSHKRIHTGEKSYECNQCGKAFKSHLYLQVHKRIHTGEKPYVCDQCGKDFVVQRDLKRHKRTHTGEKPYKCDQCGKAFASHRYLQVHKRIHTREKLYECDQCGKAFAQLGHLQVHGITHTGEKPYECDQCGKAFASHSYLQVHKRIHTGEKPYVCDWCGKAFASHSYLQVHKRIHTGENLHECDQCGKAFASHSYLQVHKRIHTGEKLYECDQCGKAFTSHSYLQVHKRIHTGEKPYVCDQCGKDFVVPSELKRHKRTHTGEKPYKCNECGKAFVGQNDLKKHKRIHTGEKPYKCNECGKAFVWIGNLRTHKVLHTGEKPYKCNECGKAFACSTSLRTHKAIHTGVKPFECKQCGKAFVGQNDLKRHERIHTGEKPYQCNECGKAFVFDASLRKHRAIHTGVKPYECKQCGKAFVGQNDLKRHERIHTGEKPYECNECGKAFSQSSQLQLHKKTHTY"
misc_feature 152..274
/gene="Zfp120l2"
/note="KRAB box; Region: KRAB; pfam01352"
/db_xref="CDD:426216"
misc_feature 359..1603
/gene="Zfp120l2"
/note="FOG: Zn-finger [General function prediction only];
Region: COG5048"
/db_xref="CDD:227381"
misc_feature 374..517
/gene="Zfp120l2"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 539..601
/gene="Zfp120l2"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(539..541,548..550,587..589,599..601)
/gene="Zfp120l2"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature 623..685
/gene="Zfp120l2"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(623..625,632..634,671..673,683..685)
/gene="Zfp120l2"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature 707..769
/gene="Zfp120l2"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(707..709,716..718,755..757,767..769)
/gene="Zfp120l2"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature order(722..724,728..730,734..736,740..745,752..757,
764..766,806..808,812..814,824..829,836..841,848..850,
890..892,896..898,902..904,908..913,920..925,932..934)
/gene="Zfp120l2"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature 791..853
/gene="Zfp120l2"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 875..937
/gene="Zfp120l2"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 959..1021
/gene="Zfp120l2"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1043..1105
/gene="Zfp120l2"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(1043..1045,1052..1054,1091..1093,1103..1105)
/gene="Zfp120l2"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature order(1058..1060,1064..1066,1070..1072,1076..1081,
1088..1093,1100..1102,1142..1144,1148..1150,1160..1165,
1172..1177,1184..1186,1226..1228,1232..1234,1238..1240,
1244..1249,1256..1261,1268..1270)
/gene="Zfp120l2"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature 1115..2113
/gene="Zfp120l2"
/note="FOG: Zn-finger [General function prediction only];
Region: COG5048"
/db_xref="CDD:227381"
misc_feature 1127..1189
/gene="Zfp120l2"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1211..1273
/gene="Zfp120l2"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1295..1357
/gene="Zfp120l2"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(1295..1297,1304..1306,1343..1345,1355..1357)
/gene="Zfp120l2"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature 1379..1441
/gene="Zfp120l2"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(1379..1381,1388..1390,1427..1429,1439..1441)
/gene="Zfp120l2"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature order(1394..1396,1400..1402,1406..1408,1412..1417,
1424..1429,1436..1438,1478..1480,1484..1486,1496..1501,
1508..1513,1520..1522,1562..1564,1568..1570,1574..1576,
1580..1585,1592..1597,1604..1606)
/gene="Zfp120l2"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature 1463..1525
/gene="Zfp120l2"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1547..1609
/gene="Zfp120l2"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1631..1693
/gene="Zfp120l2"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1715..1777
/gene="Zfp120l2"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1799..1861
/gene="Zfp120l2"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1883..1945
/gene="Zfp120l2"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(1883..1885,1892..1894,1931..1933,1943..1945)
/gene="Zfp120l2"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature order(1898..1900,1904..1906,1910..1912,1916..1921,
1928..1933,1940..1942,1982..1984,1988..1990,2000..2005,
2012..2017,2024..2026,2066..2068,2072..2074,2078..2080,
2084..2089,2096..2101,2108..2110)
/gene="Zfp120l2"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature 1967..2029
/gene="Zfp120l2"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2051..2113
/gene="Zfp120l2"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
exon 146..272
/gene="Zfp120l2"
/inference="alignment:Splign:2.1.0"
exon 273..333
/gene="Zfp120l2"
/inference="alignment:Splign:2.1.0"
exon 334..2483
/gene="Zfp120l2"
/inference="alignment:Splign:2.1.0"
ORIGIN
gaagagaaggcgggcttttccgggtgccttggtgtagtattcgcttagtagttaagcagtcttaaatggtcctggctgctgtgttctgtgtcctgtgtttggattctgtgaggcatattcaggcaagctccgaagttgcgacatggatgcattgacctatgatgatgtacatgtgaacttcacccgagaagaatgggctttgctggatccttcacagaagagtctctacaaagatgtgatgcaggagacctacaggaacctcagtgctataggttacaattgggaagaccatactattgaagaacattgtcaaagtttcagaaggcatggaaggcatgaaagatgtcatactggagagaaaccctctgaaaatactcagtgtggtaaagcctttgcacaacgtagtcatctccaaagacataataggacacgtactggagagaaactctatgaaagtaagccacgtgataaagcctttacatacgattctcagcttcaaaatcttgaaagaattcatactggagaaaaaccctacaaatgtaatcaatgtggtaaagcctttgaacgtcattgtaatcttggaaggcataaactaatacatactggaagaaaatcctacaaatgcaatcagtgtggtaaagccttttcacaaaacagtcatctccaaacacataatagtacacattctagagaggaactctataaatgtaagcaatgtggtaaatcctttacatgccgtaatgaacttcaaagtcataaaaggattcatactggagagaaatcctatgaatgcaatcagtgtggtaaagcctttaaatctcatctttatctccaagtacataaaagaatacatactggagagaagccctatgtatgtgatcaatgtggtaaagactttgtagttcagagagatcttaaaagacataaaagaacacatactggagagaaaccttacaaatgtgatcaatgtggtaaagcctttgcatctcatcgttatctccaagtacataaaagaatacatactcgagagaagctctatgaatgtgatcaatgtggtaaagcctttgcacaactcggtcatctccaagttcatggaataacacatactggagagaaaccttatgaatgtgatcaatgtggtaaagcctttgcatctcatagttatctccaagtacataaaagaatacatactggagagaagccctatgtatgtgattggtgtggtaaagcctttgcatctcatagttatctgcaagtacataaaagaatacatactggagaaaatctccatgaatgtgatcaatgtggtaaagcctttgcatctcatagttatctgcaagtacataaaagaatacatactggagagaagctctatgaatgtgatcaatgtggtaaagcctttacatctcatagttatctccaagtacataagagaatacatactggagagaagccctatgtatgtgatcaatgtggtaaagactttgtagttccgagtgagcttaaaagacataaaagaacacatactggagagaaaccttacaaatgtaatgaatgtggtaaggcctttgtaggtcagaatgatcttaaaaaacataaaagaatacatactggagagaaaccttacaaatgtaatgaatgtggtaaagcctttgtatggattggtaatctccgaacacataaagtactacatactggagagaaaccttacaaatgtaatgaatgtggtaaagcctttgcatgtagcactagtctccgaacacataaagcaatacatactggagtgaaacctttcgaatgtaagcaatgtggtaaagcctttgtaggtcagaatgaccttaaaaggcatgaaagaattcatactggagagaaaccttaccaatgtaatgaatgtggtaaagcctttgtatttgatgctagtctccgaaaacatagagcaatacatactggagtgaaaccttatgaatgtaagcaatgtggtaaagcctttgtaggtcagaatgaccttaaaaggcatgaaagaattcatactggagagaaaccttacgaatgtaatgaatgtggtaaagccttttcacaatcaagccaactccaactacataaaaaaacacatacatactaaagagtaaccctatgaatgtaaccaatgtagtaaagcctttattgtgatattcaaaggtatggtggttaaaatatacgtggcccatggcaagtggcattgttatgaggtatggcctttttggagtagatgtggcctttgaggaagtatgtcactgtgtgtgtgtgtgtgggcggggctttcagaccccatgcttaaactctacccagggcagaagagtcttctggctgccttctgatcaagatgtagaactctctccagcaccatgtctgcttggacactgacattccttccaccttgataatagactgaacctctgaatctgtatacctcccctccccccaattaaatgtcctttctaaga
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]