2024-05-04 23:43:53, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001376913 5971 bp mRNA linear ROD 22-MAR-2023 DEFINITION Rattus norvegicus testis and ovary specific TOPAZ 1 (Topaz1), mRNA. ACCESSION NM_001376913 XM_238565 VERSION NM_001376913.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE 1 (bases 1 to 5971) AUTHORS Luangpraseuth-Prosper A, Lesueur E, Jouneau L, Pailhoux E, Cotinot C and Mandon-Pepin B. TITLE TOPAZ1, a germ cell specific factor, is essential for male meiotic progression JOURNAL Dev Biol 406 (2), 158-171 (2015) PUBMED 26358182 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JACYVU010000200.1. On Nov 27, 2019 this sequence version replaced XM_238565.9. ##Evidence-Data-START## RNAseq introns :: single sample supports all introns SAMEA5760383, SAMEA5760389 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on conservation, expression ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-1169 JACYVU010000200.1 25317026-25318194 1170-3597 JACYVU010000200.1 25318924-25321351 3598-3662 JACYVU010000200.1 25327771-25327835 3663-3787 JACYVU010000200.1 25328968-25329092 3788-3852 JACYVU010000200.1 25335082-25335146 3853-3986 JACYVU010000200.1 25339835-25339968 3987-4072 JACYVU010000200.1 25343400-25343485 4073-4198 JACYVU010000200.1 25344123-25344248 4199-4262 JACYVU010000200.1 25344920-25344983 4263-4414 JACYVU010000200.1 25349570-25349721 4415-4507 JACYVU010000200.1 25349898-25349990 4508-4623 JACYVU010000200.1 25353955-25354070 4624-4690 JACYVU010000200.1 25358299-25358365 4691-4865 JACYVU010000200.1 25359420-25359594 4866-4966 JACYVU010000200.1 25360414-25360514 4967-5132 JACYVU010000200.1 25364922-25365087 5133-5297 JACYVU010000200.1 25365714-25365878 5298-5501 JACYVU010000200.1 25367297-25367500 5502-5685 JACYVU010000200.1 25369018-25369201 5686-5971 JACYVU010000200.1 25371373-25371658 FEATURES Location/Qualifiers source 1..5971 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN" /db_xref="taxon:10116" /chromosome="8" /map="8q32" gene 1..5971 /gene="Topaz1" /gene_synonym="RGD1563398" /note="testis and ovary specific TOPAZ 1" /db_xref="GeneID:301075" /db_xref="RGD:1563398" exon 1..1169 /gene="Topaz1" /gene_synonym="RGD1563398" /inference="alignment:Splign:2.1.0" misc_feature 905..907 /gene="Topaz1" /gene_synonym="RGD1563398" /note="upstream in-frame stop codon" CDS 953..5905 /gene="Topaz1" /gene_synonym="RGD1563398" /note="testis- and ovary-specific PAZ domain-containing protein 1; testis and ovary specific PAZ domain containing 1" /codon_start=1 /product="protein TOPAZ1" /protein_id="NP_001363842.1" /db_xref="GeneID:301075" /db_xref="RGD:1563398" /translation="
MRPPTTPPVPTTAPGRQGATGGLRKRGLRLTPEPGEGGGCSLEARGREEESRQKRRMVAQASGREETEGDKLAKENGKVTEAPSDEPQPGTDLVRKTSITNSESLQTVECSEFQSMAFLQSLAKEELVEGIKRRIQIKKCKSSENPPLKITKNEATQNIMVESQDELFKNTPKYSCNSLSPGVEKNCSFESHDFSFLHSEGCNNKNGFEDEPHGVCLHAEENSLKSKKENLRNLAEKDDTKTTKFLKTEKNVIASKLLLEESHLYQNKNNGLTSCLQSEKNKYSVEENNTGRKHRKKMKLSEKEEKGIDLTLSNVCNNSELVLQEHQIGMEGKETETLEHKKSFLKALRKMNHNTLPPVDHLCLPETVGKTSCRHSTNVVLQKTLESSLKEDTKNASETLGCRRLQPEEYFKSMTSSTVKSPSDSHPMGKRSPRGDLKTDTEESKVSCRRIIPMTGKRVWPLYSCARITAECWKKTSLSDLNDSLPGSLGNVRQHDFLMHQTNQTHLPDSKRLQPSLIERTIESSSKEVYDSELSSLSSVSSVEPTLLDIKETIPHDKKTKLEEPSRNGTEVVSSATEDIQLSNITQILTGNKKKKGNLSKLNLTVAPQESQEANNCANKTVHRKACITKQTLVAPDLVKILNTGRLTNFKIPLLKNKTGKRGEVSARSSEREAYSPLELLDSLSGVEAKQNRNKENICTTSGPQSLNIHSVTPGQTSSHTFYNKNSCTSPSFTKKGYDNKTCNHISETGNTISNKESLSIKIENNTFSCDLGYMEQSSFCSKKQEAFVPISSEISGRKMTKSISELKLGFPDILKAYEDDVLLIDVIQDDPELFGISSEGDLSFASEVSKISQEPRVSEEHPSADFKHRHLPGKKEPGDLSKEVALLDPGLLKLEICPSLSAAKEPQHDPKGAAISLEATEETVISENLEDLSEQARASDSDTKCVSSDKATVVEEQENTHEVCKSKDSRSVEAVSTECHLALGPNTLCSSAPPLTLSSHQDVAPAPWTNDFRFPGRYSVLQLQNPETCEIFKREKNFGVFQKPLGLMIPHRYCKLHFNTLRGCERAQCKFVHVPEQGDEKICMDVFKKYIRVNEQRLLHRAAYIFLEYYRKFPPGIHFSLQVLNDLLISLLKHCLLKEVFQVVQLSIMAKMLPALKILLKIFEYVAAMKLRNAVPALIEIFCKFIEAGMIPDPEHLNYIVKLLHQAQASQQEISAVLEAKSRLQVRQLRKNWTCDLDSALSEVENCKEKGDWTKLGNLYISIKMGCEEFADFQRFCACVAETLTEDYKEERPGVPFCEFAETVSKDPQYSEVDKTLLGRIGISAVYFYHRLLLWSKGRKVLDILYELKIHFTSLKGLTGPEKIAPRCQIVNVAAEIFIKSGSLDGAIWVLRESEWITSTPLWPCDRADVLHRHNLLCAIAHEILGKNLYKQTFEVLRNLPGFQNSQEAMGVSQSSLLFNELLDACIESNSLGISSSVADFMVAKSIPIDFSFLRRLITSLGRSCLWLKARAHYKSALSLGCYPPLEGNVYRKLLLVPSYLSEIEMLLAIEIFLVSNASSIQSPGAPTQVLQIVLKRCEESKPRSKDDYQAAVERLIMAARISDPKLFIKHMTVNINKEQVYSLEHCSAVKWLKENMKWAGKVWLFTNH"
misc_feature 2183..2281 /gene="Topaz1" /gene_synonym="RGD1563398" /note="propagated from UniProtKB/Swiss-Prot (D3ZUC6.2); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 3512..3595 /gene="Topaz1" /gene_synonym="RGD1563398" /note="propagated from UniProtKB/Swiss-Prot (D3ZUC6.2); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 4685..5212 /gene="Topaz1" /gene_synonym="RGD1563398" /note="Putative aspartate racemase; Region: Asp_Glu_race_2; pfam14669" /db_xref="CDD:434113" exon 1170..3597 /gene="Topaz1" /gene_synonym="RGD1563398" /inference="alignment:Splign:2.1.0" exon 3598..3662 /gene="Topaz1" /gene_synonym="RGD1563398" /inference="alignment:Splign:2.1.0" exon 3663..3787 /gene="Topaz1" /gene_synonym="RGD1563398" /inference="alignment:Splign:2.1.0" exon 3788..3852 /gene="Topaz1" /gene_synonym="RGD1563398" /inference="alignment:Splign:2.1.0" exon 3853..3986 /gene="Topaz1" /gene_synonym="RGD1563398" /inference="alignment:Splign:2.1.0" exon 3987..4072 /gene="Topaz1" /gene_synonym="RGD1563398" /inference="alignment:Splign:2.1.0" exon 4073..4198 /gene="Topaz1" /gene_synonym="RGD1563398" /inference="alignment:Splign:2.1.0" exon 4199..4262 /gene="Topaz1" /gene_synonym="RGD1563398" /inference="alignment:Splign:2.1.0" exon 4263..4414 /gene="Topaz1" /gene_synonym="RGD1563398" /inference="alignment:Splign:2.1.0" exon 4415..4507 /gene="Topaz1" /gene_synonym="RGD1563398" /inference="alignment:Splign:2.1.0" exon 4508..4623 /gene="Topaz1" /gene_synonym="RGD1563398" /inference="alignment:Splign:2.1.0" exon 4624..4690 /gene="Topaz1" /gene_synonym="RGD1563398" /inference="alignment:Splign:2.1.0" exon 4691..4865 /gene="Topaz1" /gene_synonym="RGD1563398" /inference="alignment:Splign:2.1.0" exon 4866..4966 /gene="Topaz1" /gene_synonym="RGD1563398" /inference="alignment:Splign:2.1.0" exon 4967..5132 /gene="Topaz1" /gene_synonym="RGD1563398" /inference="alignment:Splign:2.1.0" exon 5133..5297 /gene="Topaz1" /gene_synonym="RGD1563398" /inference="alignment:Splign:2.1.0" exon 5298..5501 /gene="Topaz1" /gene_synonym="RGD1563398" /inference="alignment:Splign:2.1.0" exon 5502..5685 /gene="Topaz1" /gene_synonym="RGD1563398" /inference="alignment:Splign:2.1.0" exon 5686..5971 /gene="Topaz1" /gene_synonym="RGD1563398" /inference="alignment:Splign:2.1.0" ORIGIN
accaccagatccacaatgttttccactgtagaacacttttcttctacaagcgacaaaactgattaaatattcatgaacggacacagtagaccgggtccaaaataacacataaggttaaactccattccaatcgttaagcaatggaggcttgtgaagggtcaagatgtggcgtaccaggaccctctttcaatggagaggcatggcctggcaacctggtcaaacttgattgaactgatacaagtatggagacatcaataaaattagaagcatgatgttgtaggtcaactgtctgagagccagagccacactaacgggaaagggacctttaacaaagaaagaaagtagagccaagttgatttggtaaatctgtatgcaaggaatccagacgggcagctagaagcttctgcccaacaacaccatagaagcaacttttacagaaataaatgatattttgcatgtcagcagctagggtacctctgagctatctggataaacgtgaaggtaggtattaagccaaagtgggctcccgggagtgtaggagagcagttagaagccactggtagacaaccattgtcagggtgttgaggggtggctgctaagagaaggagcccaggcacctccataagtccaggcctggaggagggtgaggaggcccaaggaggcaccatcacaaacctgtgcagtgaggccctgcctgaggtgagatcctgtcacctccgggtgcagcctgggcccttcgagggagcatgtggacgggcgggctgaccacgaggccctcagccggttgcccccagccgagcccaggccgtccacttccgcttcctgttgcgtcgggtacagggtccgaagccaggccaggccagggtgggcagtagcctgtgtcctgcagcgggagcagcggccctagggcgtctgggctttccagagaggctgcgtgggcggccacgggcggatgcggccgccaacaacgcccccagtccccaccacggcgccagggcgtcaaggcgccaccgggggcctgagaaagcgaggccttcgactgacgccagagccaggcgaggggggaggctgcagcctggaggccagggggcgcgaggaggagagcaggcagaagcggaggatggtggcccaggcttctgggagagaagagacagaaggtgacaagttggccaaagagaatggaaaagtcactgaagccccaagtgatgagccacagccagggactgacctggtaagaaagacatcaataaccaattcggaatctttgcaaacagtggagtgcagtgaatttcaaagtatggctttcttacagtctttggctaaggaagaattggtagaaggtattaagagaagaattcaaattaaaaaatgtaaaagctcagaaaatccacctctcaaaataactaaaaatgaggcaacacaaaatattatggttgaatcacaagatgaactgttcaagaatacaccaaaatattcttgtaacagcttatcacccggagtagaaaaaaattgcagttttgaatcacatgatttcagtttcctccattctgaaggttgtaataataaaaacggctttgaggatgagcctcatggtgtgtgtctacatgcagaagagaactctttgaagtcaaagaaagaaaaccttaggaatcttgcagagaaggatgacacaaaaactactaagttcttaaaaactgaaaaaaatgtaatagccagtaagttactgcttgaagaaagtcatttataccaaaataaaaacaatggcttgacttcttgccttcaaagtgaaaagaacaaatattcagtagaggagaacaacactgggagaaaacacaggaaaaagatgaagttatctgaaaaagaagaaaaaggtatcgatcttactttgtctaatgtgtgtaacaattctgagttggtgctacaagaacaccaaataggtatggaagggaaagaaacagagaccttagaacataaaaaaagttttctaaaagctttaagaaaaatgaaccataatacactccctccagtggaccatttgtgtctcccagaaacagtggggaaaacaagttgtagacattccacaaatgttgtgcttcagaaaacccttgaatcaagtttgaaagaggatacaaaaaatgcttcagagaccttaggatgcagaaggctgcagccagaagaatactttaaatcaatgacaagctctacggtgaaatcacctagtgacagccatcctatgggaaagagatctccacggggagatttgaaaactgacactgaagagtcaaaggttagctgtcgtagaataataccaatgactggtaaaagggtttggcctctttattcttgtgctagaataactgccgagtgttggaagaagacttccttgtcagatttaaatgactcacttccagggtctctgggaaatgttaggcaacatgattttctaatgcaccaaacgaaccagactcacttacctgactccaaacggttacaaccatccttaatagaaagaaccatcgagtcctcgagtaaagaagtgtatgattctgagttaagtagcttgtcttcagtttcttcagtagaacctactttgttggatataaaggaaactataccccatgataaaaagacaaagttagaggaacccagccgaaatgggacagaagtagtttctagtgctaccgaagacatccagttaagtaatataactcaaatcttaacaggaaataagaaaaagaaagggaatttatcaaaacttaatttaacagtggcaccccaagagagccaggaagcaaataactgtgcaaataaaactgttcatcgaaaagcttgtattactaagcaaacacttgtggctccggacttggttaaaatattaaacacaggacggctgactaattttaaaatccctttgctgaagaacaagacaggaaaaagaggagaagtaagtgccagatcatctgaaagagaggcttatagtcccctagagctacttgacagtttatctggagtagaggcaaaacaaaataggaataaggaaaatatctgtacaacttcaggacctcagtctttgaatatacatagtgtaactccagggcaaaccagttctcacacgttctacaataagaattcctgcacttctccaagctttacaaagaaaggttatgataataaaacatgcaatcacatctctgaaacaggaaatactatttcgaataaggagtctctttctattaaaattgaaaataatactttttcttgtgatcttgggtatatggagcaaagttccttctgctctaagaaacaagaagcatttgtgccaatttcctcagaaattagtggtaggaaaatgactaaaagcatttcagaactcaaattggggtttccagatattcttaaagcatatgaagatgatgtcctcttgattgatgtaattcaagatgacccagagctctttggaatctccagtgaaggggatctctcctttgcttcagaagtctccaagataagccaggagcccagagtatctgaagagcacccatcagcagactttaagcacaggcaccttccagggaaaaaagaaccaggcgatttgagtaaagaagttgccttgctggaccctggattgctgaaactggaaatctgtccttccttgtcagcagcaaaggagcctcagcatgatcctaaaggggcagccatctccttagaagctactgaggagactgttataagtgaaaacctagaagacctcagtgaacaagcacgagcttcagactcagacacaaagtgcgtaagttcagacaaggcaactgttgtggaagaacaagagaacactcatgaagtttgcaaaagcaaagattccagaagtgtggaggctgtgtctactgagtgtcacttagccctgggccccaacaccctgtgctcatcagcgcctcctttgactctgagcagtcatcaagatgtagcgccagcaccctggacgaacgatttcagatttccaggaagatattctgtcctacaactgcagaatcctgaaacttgtgaaatatttaaaagggaaaaaaattttggggtgttccagaagcccttaggattgatgataccccacagatactgcaagcttcattttaacacattgcgtggctgtgagcgagcacagtgcaagtttgtccatgtgcctgagcagggggatgaaaagatctgcatggatgtgtttaagaagtacatacgtgtcaatgagcagcgtttgctgcaccgagcagcatacatatttctggaatactacagaaagtttcccccagggatacacttcagtttacaagtgctaaatgaccttttgatttctttactcaagcattgcttattgaaagaagtcttccaggtagtgcagctcagcataatggctaaaatgctgcctgctctgaaaatattactaaaaatatttgagtatgtggcagctatgaagctaaggaatgctgtacctgctttaattgagattttttgcaagttcattgaggctgggatgatacctgacccagagcacttgaactacattgttaagcttttacaccaagcacaggcatcccaacaagaaatatctgcagttctggaagccaaatcgaggttgcaagtgaggcagctgagaaagaactggacgtgtgacttagactcggccttaagtgaagtggagaattgtaaagaaaagggtgactggaccaaattgggaaacctgtacattagcataaaaatgggctgtgaagaatttgcagatttccagagattctgtgcctgtgttgctgaaacactcacagaagattataaagaagaaaggccaggtgttcccttttgtgaatttgctgaaacagttagcaaagatccgcagtacagtgaggtggataagactttgttgggaaggatcggaataagtgctgtgtacttctaccacagactgttgctgtggtctaagggaaggaaggtcttagatatactatatgagctaaaaatacattttacaagtttaaaaggacttacaggacctgaaaaaatagcaccaagatgtcaaattgtaaacgttgcagcagagatttttatcaaaagtgggagcctagatggtgccatttgggtactgagggaatcggagtggataaccagcacaccgctttggccttgcgacagagcggatgtgcttcatcgtcacaacttgctctgcgccatagcgcatgagatcctgggcaagaatctgtacaaacagacatttgaggtcttgcggaaccttccaggctttcagaactctcaagaagcaatgggggtgtcccagtccagccttctctttaatgaactcctggatgcctgcatagaaagtaacagtcttggcatatcatcttctgtagcagacttcatggttgcaaagagcatcccgattgacttttccttcctcaggagactgataacgtccttaggaaggagctgtttgtggctcaaagccagagcccactacaaaagtgctctttcactgggttgctacccaccattagagggaaacgtataccggaaacttctactggttccttcttatttatctgagattgaaatgcttttagctatcgagatatttctggtgtctaacgctagtagtattcagagcccaggagctcccacccaggtgctgcagatcgttttgaaaagatgtgaagaaagcaaacctcgaagcaaggacgattatcaagctgcagtggaaagactgatcatggctgctcggatatccgaccccaagcttttcatcaagcacatgaccgtcaacattaacaaggagcaggtgtacagtctggagcactgctctgccgtgaaatggctgaaagagaatatgaagtgggctggaaaggtttggcttttcactaaccattagttaataaagggttgttgttgggttttctaagttcaagtaatcattgttgaaaataaaagaataaaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]