LOCUS       NM_001270416            1018 bp    mRNA    linear   ROD 08-APR-2025
DEFINITION  Rattus norvegicus stem-loop binding protein like (Slbpl),
            transcript variant 1, mRNA.
ACCESSION   NM_001270416 XM_002728533 XM_003753034
VERSION     NM_001270416.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1018)
  AUTHORS   Thelie,A., Pascal,G., Angulo,L., Perreau,C., Papillier,P. and
            Dalbies-Tran,R.
  TITLE     An oocyte-preferential histone mRNA stem-loop-binding protein like
            is expressed in several mammalian species
  JOURNAL   Mol Reprod Dev 79 (6), 380-391 (2012)
   PUBMED   22467188
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000018.1.
            
            On Apr 3, 2025 this sequence version replaced NM_001270416.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: JQ361072.1, SRR26360181.310743.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on manual assertion, conservation,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-202               JAXUCZ010000018.1  26630518-26630719
            203-305             JAXUCZ010000018.1  26630832-26630934
            306-407             JAXUCZ010000018.1  26634060-26634161
            408-512             JAXUCZ010000018.1  26634269-26634373
            513-665             JAXUCZ010000018.1  26635446-26635598
            666-786             JAXUCZ010000018.1  26635726-26635846
            787-1018            JAXUCZ010000018.1  26637463-26637694
FEATURES             Location/Qualifiers
     source          1..1018
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /map="18p12"
     gene            1..1018
                     /gene="Slbpl"
                     /gene_synonym="SLBP2"
                     /note="stem-loop binding protein like"
                     /db_xref="GeneID:100363294"
                     /db_xref="RGD:2323347"
     exon            1..202
                     /gene="Slbpl"
                     /gene_synonym="SLBP2"
                     /inference="alignment:Splign:2.1.0"
     exon            203..305
                     /gene="Slbpl"
                     /gene_synonym="SLBP2"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    265..267
                     /gene="Slbpl"
                     /gene_synonym="SLBP2"
                     /note="upstream in-frame stop codon"
     exon            306..407
                     /gene="Slbpl"
                     /gene_synonym="SLBP2"
                     /inference="alignment:Splign:2.1.0"
     CDS             343..852
                     /gene="Slbpl"
                     /gene_synonym="SLBP2"
                     /note="isoform 1 is encoded by transcript variant 1; stem
                     loop binding protein 2"
                     /codon_start=1
                     /product="uncharacterized protein LOC100363294 isoform 1"
                     /protein_id="NP_001257345.2"
                     /db_xref="GeneID:100363294"
                     /db_xref="RGD:2323347"
                     /translation="

MSLSSRMEMVSVGVTTEPCHARWEVETDEVVLRRRQKQIDYGKCTPGYQSFLQQVPRAQRQPGFHPQTPNKNRRYSRRSWDAQIRQWRRALHTWDPPSQPLHDRQAEGKAAGNFLRPVDTAPLDDLLDNWPQDPESSENWDRGEKEAQFAYLKVPASCPPQLKDELLHH"

     misc_feature    421..630
                     /gene="Slbpl"
                     /gene_synonym="SLBP2"
                     /note="Histone RNA hairpin-binding protein RNA-binding
                     domain; Region: SLBP_RNA_bind; pfam15247"
                     /db_xref="CDD:464587"
     exon            408..512
                     /gene="Slbpl"
                     /gene_synonym="SLBP2"
                     /inference="alignment:Splign:2.1.0"
     exon            513..665
                     /gene="Slbpl"
                     /gene_synonym="SLBP2"
                     /inference="alignment:Splign:2.1.0"
     exon            666..786
                     /gene="Slbpl"
                     /gene_synonym="SLBP2"
                     /inference="alignment:Splign:2.1.0"
     exon            787..1018
                     /gene="Slbpl"
                     /gene_synonym="SLBP2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

actacatttttcctgcactcaattgtctccgccccagcaaccccgggagatttaaattgagtccccttaatattgccaatcttgaggaactgttttggagtcaagtgttcgcttctccttgcttctttctcttgggttttgttacctttcggctggaaatggagctcctgccaccggtgtgacagtggttggggcatgacaggagggtttcatgcctataatcccagcacttagaagactgtaatcgaagagtcgccgtgagtttgaggacatcccgcagtgagtccagatcgccgtgggctagactgcagaagctgcttccccagaaagaaggtgtgtgaaatgtctttgtcctctaggatggagatggtaagtgtgggagtcaccacagagccttgtcatgccaggtgggaagttgagacagatgaagtggtcctgaggcggcggcagaagcagatagactatggcaagtgcacacctgggtaccagagctttctgcagcaggtccccagggcacagcgacagccgggttttcaccctcaaacaccaaacaaaaacaggaggtacagccgcagatcctgggatgcccagatcaggcagtggagaagagccctgcatacctgggaccccccaagccagcctctccatgacagacaggctgaagggaaggcagcagggaacttcctaaggccagtggatactgctcctttagatgatctcctggataactggccccaggacccagaatcctcagagaattgggacagaggcgagaaagaggcccagtttgcatacttgaaggttcctgcttcctgccctccccagctcaaagatgaacttctccatcactaagtctgctgctgtttacctatcccagacaaggggggattcaaagcattcacagcgaacactttatttttagggatttgctgctacaactgtataataatgaaatgactggaattactttttttttaattaccactttaaccgattaaaaaagaaatctaaaactcca

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