LOCUS       NM_001191573            1183 bp    mRNA    linear   ROD 20-OCT-2022
DEFINITION  Rattus norvegicus transmembrane protein 40 (Tmem40), transcript
            variant 3, mRNA.
ACCESSION   NM_001191573 XM_002729444
VERSION     NM_001191573.2
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JACYVU010000149.1.
            
            On Oct 20, 2022 this sequence version replaced NM_001191573.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: partial sample support SAMN06680447 [ECO:0000350]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            CDS uses downstream in-frame AUG :: upstream AUG and CDS extension
                                                is not conserved
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-36                JACYVU010000149.1  1142097-1142132     c
            37-117              JACYVU010000149.1  1127641-1127721     c
            118-252             JACYVU010000149.1  1126882-1127016     c
            253-306             JACYVU010000149.1  1121056-1121109     c
            307-342             JACYVU010000149.1  1119478-1119513     c
            343-375             JACYVU010000149.1  1118903-1118935     c
            376-423             JACYVU010000149.1  1118570-1118617     c
            424-495             JACYVU010000149.1  1116442-1116513     c
            496-570             JACYVU010000149.1  1116269-1116343     c
            571-633             JACYVU010000149.1  1115703-1115765     c
            634-1183            JACYVU010000149.1  1114354-1114903     c
FEATURES             Location/Qualifiers
     source          1..1183
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q42"
     gene            1..1183
                     /gene="Tmem40"
                     /gene_synonym="RGD1306976"
                     /note="transmembrane protein 40"
                     /db_xref="GeneID:680858"
                     /db_xref="RGD:1587025"
     exon            1..36
                     /gene="Tmem40"
                     /gene_synonym="RGD1306976"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    18..20
                     /gene="Tmem40"
                     /gene_synonym="RGD1306976"
                     /note="upstream_AUG_codon; putative N-terminal extension:
                     MSPGTPGKE"
     exon            37..117
                     /gene="Tmem40"
                     /gene_synonym="RGD1306976"
                     /inference="alignment:Splign:2.1.0"
     CDS             45..653
                     /gene="Tmem40"
                     /gene_synonym="RGD1306976"
                     /note="isoform 3 is encoded by transcript variant 3"
                     /codon_start=1
                     /product="transmembrane protein 40 isoform 3"
                     /protein_id="NP_001178502.1"
                     /db_xref="GeneID:680858"
                     /db_xref="RGD:1587025"
                     /translation="

MEASGSSSQSPNSSAVHRETEDLNHPETEFHKQHGKARERYERDKSSSSSSSSSSSSSSSSSSSSSSSSGADHGELEVLKDELQLYGGAAGEMVLAGESGLRRRGSGSAEGEVEASQLNRLNIKKDDEFFHFVLLCFAIGALLVCYHYYSDWFMSLGVGLLTFASLETIGIYFGLVYRIHSVLQGFIPLLQKFRLPGFRRTN"

     misc_feature    288..647
                     /gene="Tmem40"
                     /gene_synonym="RGD1306976"
                     /note="Transmembrane protein 40 family; Region: TMEM40;
                     pfam15817"
                     /db_xref="CDD:374141"
     exon            118..252
                     /gene="Tmem40"
                     /gene_synonym="RGD1306976"
                     /inference="alignment:Splign:2.1.0"
     exon            253..306
                     /gene="Tmem40"
                     /gene_synonym="RGD1306976"
                     /inference="alignment:Splign:2.1.0"
     exon            307..342
                     /gene="Tmem40"
                     /gene_synonym="RGD1306976"
                     /inference="alignment:Splign:2.1.0"
     exon            343..375
                     /gene="Tmem40"
                     /gene_synonym="RGD1306976"
                     /inference="alignment:Splign:2.1.0"
     exon            376..423
                     /gene="Tmem40"
                     /gene_synonym="RGD1306976"
                     /inference="alignment:Splign:2.1.0"
     exon            424..495
                     /gene="Tmem40"
                     /gene_synonym="RGD1306976"
                     /inference="alignment:Splign:2.1.0"
     exon            496..570
                     /gene="Tmem40"
                     /gene_synonym="RGD1306976"
                     /inference="alignment:Splign:2.1.0"
     exon            571..633
                     /gene="Tmem40"
                     /gene_synonym="RGD1306976"
                     /inference="alignment:Splign:2.1.0"
     exon            634..1183
                     /gene="Tmem40"
                     /gene_synonym="RGD1306976"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

ctcgcattgctgctcacatgagcccagggactccagggaaagagatggaggcttcaggatcttcttctcagtctccaaacagcagtgcggtccacagagaaacagaagatctaaaccacccagagacagagttccacaagcaacatgggaaggcccgggaacgctatgagagagacaagtcttcctcctcatcctcctcctcctcttcctcctcttcctcctcttcctcctcatcttcttcctcctcctcaggtgctgaccatggggaactggaggtgctgaaggacgagcttcagctctatggaggcgctgctggggaaatggtgcttgctggggagtcaggactccgaaggagaggttccggctcagcggagggagaagtggaggcctctcagttaaacagactgaacataaagaaggatgatgagtttttccattttgtccttctctgcttcgccattggagccttgctggtgtgctaccactactattcagactggttcatgtctcttggggttggtctgctcaccttcgcttctctggagaccatcggcatctacttcgggctggtgtaccggatccacagcgtacttcagggcttcatccccctccttcagaagttcaggctgccagggttcaggagaaccaactgagatcactgcccgacagcagctgagccagtccccaatgtgaccactgtaaccactgccaaacctgagcccagaatacagagtgacatgctggaagacactaggaggccacacaacaaagagctctttccttccgtgtgatctgagtgtcagctgatctgagtgggcaagctcttgttctgcagattagcacacagtctccatggggaagagagaaggcacagcatctgggtcagcaagaaagagctgggatgccattgctctcaggggtagcatgagtcttgggccttgcaggctggcatcttcgggcttgggtatctctggtgtcctcaggccatgctcatgaactcacagttccagcagagccatcttgggacagctatcctgaggcagggagctaccaggctgggtccccaggggaacctgcagataagatactggggaccaaagctgtagaccatcacccagtgaccaaccctgttgcccttggacttctaaaacccaaataaatattctattccctgtgctaaaaa

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