LOCUS       NM_001107915            6963 bp    mRNA    linear   ROD 21-MAR-2023
DEFINITION  Rattus norvegicus vir like m6A methyltransferase associated
            (Virma), mRNA.
ACCESSION   NM_001107915 XM_001053130 XM_001053205 XM_232783
VERSION     NM_001107915.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 6963)
  AUTHORS   Wen J, Lv R, Ma H, Shen H, He C, Wang J, Jiao F, Liu H, Yang P, Tan
            L, Lan F, Shi YG, He C, Shi Y and Diao J.
  TITLE     Zc3h13 Regulates Nuclear RNA m6A Methylation and Mouse Embryonic
            Stem Cell Self-Renewal
  JOURNAL   Mol Cell 69 (6), 1028-1038 (2018)
   PUBMED   29547716
REFERENCE   2  (bases 1 to 6963)
  AUTHORS   Yue Y, Liu J, Cui X, Cao J, Luo G, Zhang Z, Cheng T, Gao M, Shu X,
            Ma H, Wang F, Wang X, Shen B, Wang Y, Feng X, He C and Liu J.
  TITLE     VIRMA mediates preferential m6A mRNA methylation in 3'UTR and near
            stop codon and associates with alternative polyadenylation
  JOURNAL   Cell Discov 4, 10 (2018)
   PUBMED   29507755
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 6963)
  AUTHORS   Schwartz S, Mumbach MR, Jovanovic M, Wang T, Maciag K, Bushkin GG,
            Mertins P, Ter-Ovanesyan D, Habib N, Cacchiarelli D, Sanjana NE,
            Freinkman E, Pacold ME, Satija R, Mikkelsen TS, Hacohen N, Zhang F,
            Carr SA, Lander ES and Regev A.
  TITLE     Perturbation of m6A writers reveals two distinct classes of mRNA
            methylation at internal and 5' sites
  JOURNAL   Cell Rep 8 (1), 284-296 (2014)
   PUBMED   24981863
REFERENCE   4  (bases 1 to 6963)
  AUTHORS   Horiuchi K, Kawamura T, Iwanari H, Ohashi R, Naito M, Kodama T and
            Hamakubo T.
  TITLE     Identification of Wilms' tumor 1-associating protein complex and
            its role in alternative splicing and the cell cycle
  JOURNAL   J Biol Chem 288 (46), 33292-33302 (2013)
   PUBMED   24100041
REFERENCE   5  (bases 1 to 6963)
  AUTHORS   Baltz AG, Munschauer M, Schwanhausser B, Vasile A, Murakawa Y,
            Schueler M, Youngs N, Penfold-Brown D, Drew K, Milek M, Wyler E,
            Bonneau R, Selbach M, Dieterich C and Landthaler M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473962.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_001053130.1, XM_232783.4, XM_001053205.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed/partial sample support SAMD00132261,
                              SAMD00132263 [ECO:0000350]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..6963
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q13"
     gene            1..6963
                     /gene="Virma"
                     /gene_synonym="RGD1559904"
                     /note="vir like m6A methyltransferase associated"
                     /db_xref="GeneID:313061"
                     /db_xref="RGD:1559904"
     exon            1..118
                     /gene="Virma"
                     /gene_synonym="RGD1559904"
                     /inference="alignment:Splign:2.1.0"
     CDS             56..5644
                     /gene="Virma"
                     /gene_synonym="RGD1559904"
                     /codon_start=1
                     /product="protein virilizer homolog"
                     /protein_id="NP_001101385.1"
                     /db_xref="GeneID:313061"
                     /db_xref="RGD:1559904"
                     /translation="

MAVDSSMELLFLDTFKHPSAEQSSHIDVVRFPCVVYINEVRVIPPGVRAHSGLPDNRAYGETSPHTFQLDLFFNNVSKPSAPVFDRLGSLEYDENTSIIFRPNSKVNTDGLVLRGWYNCLTLAIYGSVDRVLSHDRDSPPPPPPPPPPPQPQPTLKRSLKHADGEKEDQFNGSPPRPQPRGPRTPPGPPPPDDDEDDPMSLPVSGDKEEDVPHREDYFEPISPDRNSVPQEGQYSDEGEVEEEQQEEGEDDEDDVDVDEEEDEDEDDCHTVDSIPDDDEEDEEEEGEEDEEGEGDDGYEQISSDEDGIADLERETFKYPNFDVEYTPEDLASVPPMTYDPYDRELVPLLYFSCPYKTTFEIEINRMKDQGPDKENSGAIEASLKLTELLDLYHEDRGAKWVTALEEVPSLIIKGLSYLQLKNTKQDSLGQLVDWTMQALNLQVAFRQPIALNVRQLKAGTKLVTSLAECGAPGVTELLQAGVISVLFDLLFADHVSSSLKLNAFKALDSVISMTEGMEAFLRSTQSEKSGYQKLLELILLDQTVRVVTAGSAILQKCHFYEVLSEIKRLGDHIAEKTSSVPNPSEPDHDTDAVLERANPDYENEVEASMDMDLLESSNISEGEIEKLINLLEEVFHLMETAPHTMIQPPVKSFPTIARITGPPERDDPYPVLFRGPGFGFEHSNSGLQPSATPVPDGPMASSGLCGHCTHMVHRHTCKQNTHNIRYLHSHHFLELVTLLLSIPITSAHPGVLQATKDVLKFLAQSQKGLLFFMSEYEATNLLIRALCHLYDQDEEEGLQSDGVDDAFALWLQDSTQTLQCVTELFSHFQRCTASEETDHSDLLGTLHNLYLITFNPVGRSAVGHVFSLDKNLQSLITLMEYYSKEALGDSKSKKSVAYNYACILILVVVQSSSDVQMLEQHAASLLKLCKADENNAKLQELGKWLEPLKNLRFEINCIPNLIEYVKQNIDNLMTAEGVGLTTALRVLCNVACPPPPVEGQQKDLKWNLAVIQLFSAEGMDTFIRVLQKLNSILTQPWRLHVNMGTTLHRVTTISMARCTLTLLKTMLTELLRGGSFEFKDMRVPSALVTLHMLLCSIPLSGRLDSDEQKIQNDIIDILLTFTQGVNEKLTISEETLANNTWSLMLKEVLSSILKVPEGFFSGLILLSELLPLPLPMQTTQVIEPHDISVALNTRKLWSMHLHVQAKLLQEIVRSFSGTTCQPIQHMLRRICVQLCDLASPTALLIMRTVLDLIVEDLQSTSEDKEKQYTSQTTRLLALLDALASHKACKLAILHLINGTIKGDEKYAEIFQDLLALVRSPGDSVIRQQCVEYVTSILQSLCDQDIALILPSPSEGPGSELEQLSNSLPSKELMAAICDCLLATLANSESTYNCLLTCVRTMMFLAEHDYGLFHLKSSLRKNSSALHSLLKRVVSTFSKDTGELTSASLDFMRQILNSDAMGCCGDDSGLMEVESAHPPRTMSINAAELKQLLQSKEESPESLFLELEKLVLEHSKEDDSLESLLDNVIGLKQMLESSGDPLPLSDQDVEPVLSAPESLQNLFNNRTAYVLADVMDDQLKSMWFTPFQAEEIDTDLDLVKVDLIELSEKCCSDFDLHSELERSFLSEPSSPGRAKTTKGFKLGKHKHETFITSSGKSEYIEPAKRAHVVPPPRGRGRGGFGQGIRPHDIFRQRKQNTSRPPSMHVDDFVAAESKEVVPQDGIPPPKRPLKVSQKISSRGGFSGNRGGRGAFHSQNRFFTPPASKGNYSRREGTRGSSWSAQNTPRGNYNESRGGQSNFNRGPLPPLRPLSSTGYRPSPRDRASRGRGGLGPSWASTNSGSGGSRGKFVSGGSGRGRHVRSFTR"

     misc_feature    68..760
                     /gene="Virma"
                     /gene_synonym="RGD1559904"
                     /note="Virilizer, N-terminal; Region: VIR_N; pfam15912"
                     /db_xref="CDD:435014"
     exon            119..234
                     /gene="Virma"
                     /gene_synonym="RGD1559904"
                     /inference="alignment:Splign:2.1.0"
     exon            235..321
                     /gene="Virma"
                     /gene_synonym="RGD1559904"
                     /inference="alignment:Splign:2.1.0"
     exon            322..370
                     /gene="Virma"
                     /gene_synonym="RGD1559904"
                     /inference="alignment:Splign:2.1.0"
     exon            371..539
                     /gene="Virma"
                     /gene_synonym="RGD1559904"
                     /inference="alignment:Splign:2.1.0"
     exon            540..662
                     /gene="Virma"
                     /gene_synonym="RGD1559904"
                     /inference="alignment:Splign:2.1.0"
     exon            663..935
                     /gene="Virma"
                     /gene_synonym="RGD1559904"
                     /inference="alignment:Splign:2.1.0"
     exon            936..2076
                     /gene="Virma"
                     /gene_synonym="RGD1559904"
                     /inference="alignment:Splign:2.1.0"
     exon            2077..2229
                     /gene="Virma"
                     /gene_synonym="RGD1559904"
                     /inference="alignment:Splign:2.1.0"
     exon            2230..2718
                     /gene="Virma"
                     /gene_synonym="RGD1559904"
                     /inference="alignment:Splign:2.1.0"
     exon            2719..2873
                     /gene="Virma"
                     /gene_synonym="RGD1559904"
                     /inference="alignment:Splign:2.1.0"
     exon            2874..2956
                     /gene="Virma"
                     /gene_synonym="RGD1559904"
                     /inference="alignment:Splign:2.1.0"
     exon            2957..3050
                     /gene="Virma"
                     /gene_synonym="RGD1559904"
                     /inference="alignment:Splign:2.1.0"
     exon            3051..3595
                     /gene="Virma"
                     /gene_synonym="RGD1559904"
                     /inference="alignment:Splign:2.1.0"
     exon            3596..3831
                     /gene="Virma"
                     /gene_synonym="RGD1559904"
                     /inference="alignment:Splign:2.1.0"
     exon            3832..4084
                     /gene="Virma"
                     /gene_synonym="RGD1559904"
                     /inference="alignment:Splign:2.1.0"
     exon            4085..4302
                     /gene="Virma"
                     /gene_synonym="RGD1559904"
                     /inference="alignment:Splign:2.1.0"
     exon            4303..4435
                     /gene="Virma"
                     /gene_synonym="RGD1559904"
                     /inference="alignment:Splign:2.1.0"
     exon            4436..4588
                     /gene="Virma"
                     /gene_synonym="RGD1559904"
                     /inference="alignment:Splign:2.1.0"
     exon            4589..4749
                     /gene="Virma"
                     /gene_synonym="RGD1559904"
                     /inference="alignment:Splign:2.1.0"
     exon            4750..4846
                     /gene="Virma"
                     /gene_synonym="RGD1559904"
                     /inference="alignment:Splign:2.1.0"
     exon            4847..5013
                     /gene="Virma"
                     /gene_synonym="RGD1559904"
                     /inference="alignment:Splign:2.1.0"
     exon            5014..5345
                     /gene="Virma"
                     /gene_synonym="RGD1559904"
                     /inference="alignment:Splign:2.1.0"
     exon            5346..5489
                     /gene="Virma"
                     /gene_synonym="RGD1559904"
                     /inference="alignment:Splign:2.1.0"
     exon            5490..6963
                     /gene="Virma"
                     /gene_synonym="RGD1559904"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

ggaggttggagagctgccccggaagtcatctcccggtcccccgcccgcggcgaacatggcggtggactcgtccatggagctgctatttttagatacttttaaacatccaagcgctgagcaaagttctcatatagatgtggttcgttttccatgtgtggtttatatcaatgaagtccgagttatacccccgggagtacgagcccatagtggcttacctgacaacagagcatatggggaaacatctcctcacacatttcaactagacttatttttcaataacgtaagcaaaccaagtgctccagtttttgataggttgggaagtctggaatatgatgagaatacgtctatcatctttagaccaaactcgaaggtaaatactgatggtctggtgctaagaggctggtacaactgtctgaccctggcaatatatggatcggtggatagagtgctaagccatgacagagactctcctccacctcctcctccacctccaccccctccccagccacagccgacactgaaaaggagcctaaaacacgctgatggtgagaaagaagatcagtttaatggaagtcctccaagacctcagccccggggaccaagaactcctcccggacctcctccacccgatgacgatgaggatgaccctatgtctttgccagtgtctggtgacaaagaagaagatgttccccacagagaagattactttgagcccatttctcctgataggaattccgtcccgcaggaaggtcagtattccgatgagggggaggtcgaagaagaacagcaggaagagggagaagatgatgaagatgatgtggatgtagacgaagaagaggatgaagatgaggatgactgccatacagtggacagtatccctgatgatgatgaggaagatgaagaggaggagggtgaagaagatgaagaaggtgaaggggacgatggctacgagcagatctccagtgatgaagatgggattgctgacttggaacgtgaaactttcaagtatccaaacttcgatgttgaatacactccggaagacctggcgtctgttcctcctatgacatacgacccctatgacagggagctggtaccactcttgtatttcagctgcccatacaaaactacttttgaaattgaaatcaatagaatgaaggatcagggtccagataaagagaattcaggggcaatagaagcttcgttgaagttaactgagctgctagatctgtatcacgaagacaggggcgcaaagtgggtgacagctctagaagaagtcccaagtttaattataaaaggattaagctatttgcagttgaagaacacaaaacaagactcccttggccagttggtagactggacaatgcaagctttaaatttacaagtagcctttcgccagcccatagccttaaatgtcagacagctcaaagctgggaccaagctagtgacctcattagcagaatgtggggctccaggagtcacagaattgctacaagcaggagtgatcagtgtattgtttgatctcctatttgctgatcatgtctcatcgtcccttaagttaaatgcttttaaagctttggacagtgtcattagcatgaccgaaggaatggaggcctttttaagaagcacccaaagtgagaaaagtggctatcaaaaactgctggagctcatacttctagatcagacggtgagggttgtcactgctggctcagctattcttcaaaaatgccatttctatgaagtcttgtcagagattaaaagactcggtgaccatatagcagagaagacttcatctgttcccaaccccagcgagcctgatcacgacacagatgctgtactggagagagcaaacccagattatgagaatgaagtagaagcttctatggacatggatctattggaatcctcaaatataagcgaaggcgaaatagaaaagcttattaatcttttagaggaggtttttcatctaatggaaactgcacctcacacaatgatccaacctcctgttaagtctttcccaacaatagcacggattactggacctccagagagggatgacccatatcctgttctctttagagggcctgggtttggttttgaacactcaaatagtggcttacaaccatcagctacgccagttccagacggtccaatggcctcttctggcctatgtgggcactgtacacacatggtacacaggcatacatgcaagcagaacacccacaacataaggtatcttcacagccatcacttcctggagttggtcaccttgcttctgtcgattccaataacaagtgcccatcccggagtgctgcaagccaccaaggacgttttaaagtttctcgcacagtcacaaaagggccttctcttttttatgtcagaatatgaagcaacaaacttgttgatccgagctctgtgccacctttacgatcaagacgaagaggagggccttcagtctgacggggttgacgatgcctttgccttgtggctgcaggactcaactcagactctccagtgcgtcacagaactgttcagccattttcagcgttgtacagccagtgaggaaactgaccattcggatctcctgggcaccctccacaatctttatttgattacttttaatcctgttggaagatcagctgttggccatgttttcagccttgacaaaaaccttcagagtctcattactctaatggagtactattccaaagaagccctaggtgattccaagtctaagaagtcagtagcttataattatgcatgcatacttattctggtggtggttcagtcttccagtgatgtccagatgctggagcagcatgcagcatctctcttgaagctttgcaaagcagatgaaaataatgctaaactgcaagaacttggcaagtggcttgaacctctgaaaaacctcagatttgaaattaactgcatcccaaatctaattgaatatgttaaacagaatattgataacttgatgactgcagaaggagttggccttaccactgccttacgtgttctctgtaatgtggcttgtccaccacctcctgtagaaggtcaacaaaaagacctgaagtggaaccttgctgttattcagcttttttctgctgaaggaatggacacctttattcgggttctgcaaaagttgaacagtattttgacacagccttggaggctccatgtgaacatggggactaccctgcacagagttactaccatttcaatggctcgctgcacgctcacccttcttaaaactatgctgacagagctcctgcgaggcggatcctttgagtttaaggacatgcgagttccttcagcactcgttactttacacatgctcctgtgctctatccctctctcaggtcgtttggatagcgatgaacagaaaattcagaatgatatcattgatatcttattgacttttacacaaggagttaatgagaagctcacaatctctgaagagactctggccaataatacttggtctttaatgttaaaggaagttctctcttccatcttgaaggttcctgaaggcttcttctctggactcatactcctttcagagctgctgcctcttcccttgcccatgcagaccacgcaggttattgagccacatgatatatcagtggcactcaacacccgaaaattgtggagcatgcaccttcatgttcaagcaaagttgctccaagaaatagttcgttctttctctggcacaacctgccagcccattcagcatatgttacggcgtatttgtgttcagttgtgtgaccttgcctctccaactgctcttctgatcatgagaactgtgttggatttgattgtagaagacttgcaaagcacttcagaagataaggaaaagcagtatactagccaaaccaccaggttgcttgctcttctcgatgctctggcttcacacaaagcttgtaaattagctattttgcatctaattaatggaactattaaaggcgatgaaaagtatgcagagatattccaggatcttttagctttggtgcgatctcctggggacagtgttattcgccagcagtgtgtggaatatgtcacatccattttgcagtctctctgtgaccaggacatcgcactcatcttgccgagcccttctgaaggtcccggctctgagctggagcagctttccaactccctcccgagtaaagagctgatggctgccatctgtgactgtctgctggccacactagccaactccgaaagcacttacaactgtctgctgacgtgtgtgcgcacaatgatgtttcttgcagagcatgattatgggttgtttcacttaaaaagttctttaaggaagaacagtagtgctctgcatagcttgctgaagcgagtggtcagcacattcagtaaggacactggcgagcttacgtcagcgtctctggacttcatgagacagatcctcaactctgatgcaatgggctgttgtggagacgacagtggtctcatggaggtagagagcgctcacccaccccggacgatgagtattaacgctgcagagctaaaacagctcctacagagcaaagaagagagtccagagagtctgtttcttgaactagagaagctcgttttggaacactcaaaagaggatgacagtctggagtccctgctggataacgtaattgggctgaagcagatgctggagtcttcaggtgaccctttgcctctcagtgaccaggatgtagagccagtcctgtcagctccagagtctctccagaatctattcaacaacaggactgcgtatgtgttggctgatgtcatggatgatcagttgaaatctatgtggtttactccatttcaggctgaagagatcgatacagatctggatttggtaaaggttgacttaattgagctctcggaaaagtgctgcagtgactttgacctgcactcagaattggagcgctcctttttgtcagaaccgtcatctccaggaagagccaagaccacgaaggggtttaaactagggaagcataagcacgagacgttcataacttcaagtggaaaatctgaatacattgaacccgccaaacgagctcacgttgtgcccccaccaagaggccggggccggggaggatttggccagggcatccggccgcatgatattttccgtcagagaaagcagaacacgagtaggccaccgtctatgcatgtggatgactttgttgcagccgaaagtaaagaagtggttcctcaagatggaatacctccacccaaacggccgctcaaggtctctcagaagatttcctcccgcggtggattttcaggcaaccgaggagggcggggtgcttttcacagtcagaacaggtttttcacaccgcctgcttcgaaaggaaactacagtcgtcgggaaggaacaagaggctccagttggagtgctcagaatactccgagaggaaattataacgaaagccgagggggccagagcaacttcaacaggggccctcttccgccattacggccacttagctccacaggttaccgccctagtccccgggatcgagcttctcggggccgtggggggctcggaccgtcctgggccagtacaaatagcggcagtggaggctcacgaggaaagtttgttagtggaggcagtggtagaggccgtcatgtacggtcctttactcgatagacgtgctcttgggaacaccccaagtaaatggacatttcatgaggacaaaaaacagacagaccttgaaggaccaatttagacttagcagttatatctggattcatctgagagaatatttttatctgaagaaagcagattttgtttgatacttaatgagatttcaataaaaatccaaactttgtatatatgtttgtatatatttttcccatttttatatggtatttatttagaaaatttctaggtagaaagaggaaaactaaataatttgttttgtatttttcttgcttatactatagatatttccaaactttcttcgcctgtgacaccctttagtgtgtctcagggattttttcacagtgtccctaggccaaaagcaaacttaatacttttgtttattaaacagttaggtccaagcaaccgaagactttccaccatcaccactagtaactggacaccactcgctcaaggcctcacccttggaaacagcagccttccctgtccgggtccccgagcagtactgtttatcacactgctgaacatttgtcacagttgtgtgctgtcatggaaagtcatccagtgctacccacgctgaaaatgtgaactacctcaaactagtagtttgtgtggtccagcagatgttgctgtttcctcaaaaattcaaaacgctcatgctcatttacgaaggtgcccaccacacagtttagtcatcatcattgctgcaccagaagaagcaaaacacctccttatgttagagagaaatgcagactttgcttcaagtttggacctactgatgctattttataacatagttatttaaagcctaaaagttggcttatcctaatatggttattttgggaatcaagcatctactttatattcagaaataaaacttataactttgaccaaggagccatatttcccccaagatatgtcttaattcattgagcctatatacatggcataaaatatagagttctcttaaacaaaactaagtgtatgagtctcattccatcccaacagcctctgttctggggaatcacttgagtgcatttaatatctgtttattaggcaaaaaggccttgaaaagttcagctttagaattgagggtttagcttactggtagaagtacttgcctagcatgtgtgataaccactagaagtgtgtatgtgtgtgtctctatgtgcacgtctttgtgtatgcacatgcatatgtgcgtgcgtgcatgcacgcatacatgcatgtgcatggaaagttcagccgtaaggattctgatgcttatgtacaaggtgatgaaaattttcttaatagtctggaacaat

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