2024-05-04 22:09:58, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001107135 2026 bp mRNA linear ROD 15-JUL-2023 DEFINITION Rattus norvegicus claudin 15 (Cldn15), mRNA. ACCESSION NM_001107135 XM_001076934 XM_222085 VERSION NM_001107135.3 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE 1 (bases 1 to 2026) AUTHORS Cai M, Shao J, Wang Y, Yung B, Li JN, Zhang HH, Li YT and Yao DB. TITLE Claudin 14/15 play important roles in early wallerian degeneration after rat sciatic nerve injury JOURNAL Chin J Traumatol 24 (6), 374-382 (2021) PUBMED 33903003 REMARK GeneRIF: Claudin 14/15 play important roles in early wallerian degeneration after rat sciatic nerve injury. REFERENCE 2 (bases 1 to 2026) AUTHORS Krause G, Winkler L, Mueller SL, Haseloff RF, Piontek J and Blasig IE. TITLE Structure and function of claudins JOURNAL Biochim Biophys Acta 1778 (3), 631-645 (2008) PUBMED 18036336 REMARK Review article REFERENCE 3 (bases 1 to 2026) AUTHORS Fujita H, Chiba H, Yokozaki H, Sakai N, Sugimoto K, Wada T, Kojima T, Yamashita T and Sawada N. TITLE Differential expression and subcellular localization of claudin-7, -8, -12, -13, and -15 along the mouse intestine JOURNAL J Histochem Cytochem 54 (8), 933-944 (2006) PUBMED 16651389 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JACYVU010000227.1. On Oct 29, 2022 this sequence version replaced NM_001107135.2. ##Evidence-Data-START## RNAseq introns :: single sample supports all introns SAMD00155333, SAMEA5760389 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on conservation, expression, longest protein ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-428 JACYVU010000227.1 976259-976686 c 429-593 JACYVU010000227.1 972072-972236 c 594-675 JACYVU010000227.1 969432-969513 c 676-792 JACYVU010000227.1 969228-969344 c 793-2026 JACYVU010000227.1 967907-969140 c FEATURES Location/Qualifiers source 1..2026 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN" /db_xref="taxon:10116" /chromosome="12" /map="12q12" gene 1..2026 /gene="Cldn15" /note="claudin 15" /db_xref="GeneID:304388" /db_xref="RGD:1310678" exon 1..428 /gene="Cldn15" /inference="alignment:Splign:2.1.0" misc_feature 98..100 /gene="Cldn15" /note="upstream in-frame stop codon" CDS 212..895 /gene="Cldn15" /codon_start=1 /product="claudin-15" /protein_id="NP_001100605.1" /db_xref="GeneID:304388" /db_xref="RGD:1310678" /translation="
MSIAVETFGFFMSALGLLMLGVTLPNSYWRVSTVHGNVITTNTIFENLWYSCATDSLGVSNCWDFPSMLALSGYVQGCRALMITAILLGFLGLFLGMVGLRCTNVGNIDLSRKAKLLAIAGAFHILAGACGMVAISWYAVNITTDFFNPLYVGTKYELGSALYLGWSASLLSILGGICVFSTCCCDSKEDPATRVGLPYKPSTVVTARATSDESDVSFGKYGKNAYV"
misc_feature 215..283 /gene="Cldn15" /note="propagated from UniProtKB/Swiss-Prot (D3ZQJ0.1); transmembrane region" misc_feature 221..742 /gene="Cldn15" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" misc_feature 374..376 /gene="Cldn15" /note="Important for Na(+)-selective paracellular ion transport. /evidence=ECO:0000250; propagated from UniProtKB/Swiss-Prot (D3ZQJ0.1); other site" misc_feature 401..403 /gene="Cldn15" /note="Important for Na(+)-selective paracellular ion transport. /evidence=ECO:0000250; propagated from UniProtKB/Swiss-Prot (D3ZQJ0.1); other site" misc_feature 413..415 /gene="Cldn15" /note="Important for the formation of tight-junction strand-like structures. /evidence=ECO:0000250; propagated from UniProtKB/Swiss-Prot (D3ZQJ0.1); other site" misc_feature 434..508 /gene="Cldn15" /note="propagated from UniProtKB/Swiss-Prot (D3ZQJ0.1); transmembrane region" misc_feature 542..544 /gene="Cldn15" /note="Phosphoserine. /evidence=ECO:0000250|UniProtKB:P56746; propagated from UniProtKB/Swiss-Prot (D3ZQJ0.1); phosphorylation site" misc_feature 557..631 /gene="Cldn15" /note="propagated from UniProtKB/Swiss-Prot (D3ZQJ0.1); transmembrane region" misc_feature 647..652 /gene="Cldn15" /note="propagated from UniProtKB/Swiss-Prot (D3ZQJ0.1); Region: Important for the formation of tight-junction strand-like structures. /evidence=ECO:0000250" misc_feature 689..757 /gene="Cldn15" /note="propagated from UniProtKB/Swiss-Prot (D3ZQJ0.1); transmembrane region" misc_feature 842..844 /gene="Cldn15" /note="Phosphoserine. /evidence=ECO:0007744|PubMed:22673903; propagated from UniProtKB/Swiss-Prot (D3ZQJ0.1); phosphorylation site" misc_feature 851..853 /gene="Cldn15" /note="Phosphoserine. /evidence=ECO:0007744|PubMed:22673903; propagated from UniProtKB/Swiss-Prot (D3ZQJ0.1); phosphorylation site" misc_feature 860..862 /gene="Cldn15" /note="Phosphoserine. /evidence=ECO:0007744|PubMed:22673903; propagated from UniProtKB/Swiss-Prot (D3ZQJ0.1); phosphorylation site" exon 429..593 /gene="Cldn15" /inference="alignment:Splign:2.1.0" exon 594..675 /gene="Cldn15" /inference="alignment:Splign:2.1.0" exon 676..792 /gene="Cldn15" /inference="alignment:Splign:2.1.0" exon 793..2026 /gene="Cldn15" /inference="alignment:Splign:2.1.0" ORIGIN
attcctctgacctgccaggaagcagagcctcccagagaccgggcagaagcaatcagacctgacctccagaagacagcagacaagaaccgcagctggatgagcttcccttcaaccttctccctcctcagtcttccttagcatctcacctggaggagccacctctatcccaatccctggggctcaagcccccttgcgggacctgcatcccagcatgtcgatagctgtggagacctttggtttcttcatgtcagccctgggactgctgatgctgggggtgacccttccaaacagctactggagagtgtctaccgtccatgggaacgtcatcaccactaacaccatcttcgagaacctgtggtacagctgtgccaccgactccctgggagtctccaactgctgggacttcccgtccatgctggccctctctggctatgtccagggctgccgagctctcatgatcaccgccatcctcctgggcttcctgggcctctttctaggcatggtggggctccgctgcaccaacgtgggcaacatcgacctctccagaaaggccaagctgctggccattgcaggggccttccacatacttgctggagcctgtggcatggttgctatctcatggtatgctgtcaacatcaccaccgacttcttcaaccccctgtatgttggaaccaagtatgaactgggctctgccctctacttgggctggagcgcctctctgctctccatcctgggcggcatctgtgtcttctccacctgctgctgtgactccaaggaggacccagccaccagggtgggacttccctacaagccttctacggttgtgacagcccgagccacttccgatgaaagtgacgtcagctttggtaaatatggcaaaaatgcctacgtgtaggagctccggcctggtggacagcgtttcttgtcccactgtccccagcagaaaacgtccccaggacctgtgggaggactagtctccagttaataacctgaggacaggccaaatttccaggcctcagcctatgccgggaagccactacccactctgggcacaccttatctggcactccagtctctcccaggaacagaagcttcaggggcaacttgcatggcctcccacagctggactcaaggggacagaggtgtctgcagcatgtgactctatagaaatatgtgcataaatcaatgtatattgtgattgtacagggggctcctggggtcctgaagttacgaccacggaagggggtcattttcaagccatagactgtcaagtctgcccactttgggggctgtgtcatctagtgagacggtgggccagggagctggggacgtggctcagtgagtttagagtgtttgctacacaagtatgaggacctgagttcaaatccccagtacccgtgtgaaaagcgggccctggacacactcctgcagcccaagtgttgctagggaggggctctgaggctcactggcttccaacctcactccaggttctatgtgagttcaatctcaagggaatgaggtggagcacgatagagcagggtgctgggagccctcttccgacctttgcgggcacacagacttgtgcgtagaggacacacgcgtgcgcgcacacacacacacacacacattctcaataaaaggatttgaaagggggaaatcgctaacaactgctccgaatcacccacctcaggagactgttaatagctgggaagcttctggcccactgaaagttcctctctgttgacccctgacctattttctcacagcctcacaaaggggcagttgatttagaacgggcgggcattggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttaaagtcgatttggggtttaaaataaaggtttttttttttttggttctttttttcggagctggggaccgaacccagggccttgcgcttcccaggcaagcgctctaccactgagctaaatccccaaccccaaaataaaggtatttttaaagatgca
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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