2024-04-28 05:04:42, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001103362 3589 bp mRNA linear ROD 17-JUL-2023 DEFINITION Rattus norvegicus NudC domain containing 3 (Nudcd3), transcript variant 2, mRNA. ACCESSION NM_001103362 VERSION NM_001103362.2 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE 1 (bases 1 to 3589) AUTHORS Asante D, Stevenson NL and Stephens DJ. TITLE Subunit composition of the human cytoplasmic dynein-2 complex JOURNAL J Cell Sci 127 (Pt 21), 4774-4787 (2014) PUBMED 25205765 REFERENCE 2 (bases 1 to 3589) AUTHORS Shao CY, Zhu J, Xie YJ, Wang Z, Wang YN, Wang Y, Su LD, Zhou L, Zhou TH and Shen Y. TITLE Distinct functions of nuclear distribution proteins LIS1, Ndel1 and NudCL in regulating axonal mitochondrial transport JOURNAL Traffic 14 (7), 785-797 (2013) PUBMED 23551859 REMARK GeneRIF: knocking down both Ndel1 and NudCL almost blocked retrograde mitochondrial axonal transport. Erratum:[Traffic. 2013 Oct;14(10):1105-8] REFERENCE 3 (bases 1 to 3589) AUTHORS Florea L, Di Francesco V, Miller J, Turner R, Yao A, Harris M, Walenz B, Mobarry C, Merkulov GV, Charlab R, Dew I, Deng Z, Istrail S, Li P and Sutton G. TITLE Gene and alternative splicing annotation with AIR JOURNAL Genome Res 15 (1), 54-66 (2005) PUBMED 15632090 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JACYVU010000254.1. On Mar 30, 2023 this sequence version replaced NM_001103362.1. ##Evidence-Data-START## Transcript exon combination :: BC107925.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00132262, SAMD00132263 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-244 JACYVU010000254.1 34760038-34760281 c 245-567 JACYVU010000254.1 34753368-34753690 c 568-700 JACYVU010000254.1 34713273-34713405 c 701-844 JACYVU010000254.1 34697014-34697157 c 845-3589 JACYVU010000254.1 34688202-34690946 c FEATURES Location/Qualifiers source 1..3589 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN" /db_xref="taxon:10116" /chromosome="14" /map="14q21" gene 1..3589 /gene="Nudcd3" /note="NudC domain containing 3" /db_xref="GeneID:100125378" /db_xref="RGD:1642416" exon 1..244 /gene="Nudcd3" /inference="alignment:Splign:2.1.0" CDS 53..952 /gene="Nudcd3" /note="isoform 2 is encoded by transcript variant 2; nudC domain-containing protein 3; nudC domain-containing protein 3-like" /codon_start=1 /product="nudC domain-containing protein 3 isoform 2" /protein_id="NP_001096832.1" /db_xref="GeneID:100125378" /db_xref="RGD:1642416" /translation="
MEPGAAELYDQALLGILQHVGNVQDFLRVLFGFLYRKTDFYRLLRHPTDRMGFPPGAAQALVLQVFKTFDHMARQDDEKRKKELEEKIRKKEEEAKAVAAATAEKEAVPVPVQEVEIDATTALSGPREVEKEELPGPQGPERKVTHGSEEAEAPGTASSAAEGPKDPPVLPRIQEQFQKNPDSYNGAIRENYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSGSIRVAMLEENGERVLMEGKLTHKINTESSLWSLEPGKCVLVPSWKERPTTFPLAQTQSHGQLRGVKPSSLGTVLP"
misc_feature 77..253 /gene="Nudcd3" /note="N-terminal conserved domain of Nudc; Region: Nudc_N; pfam14050" /db_xref="CDD:433675" misc_feature 608..>847 /gene="Nudcd3" /note="alpha-crystallin domain (ACD) found in alpha-crystallin-type small heat shock proteins, and a similar domain found in p23 (a cochaperone for Hsp90) and in other p23-like proteins; Region: alpha-crystallin-Hsps_p23-like; cl00175" /db_xref="CDD:444727" exon 245..567 /gene="Nudcd3" /inference="alignment:Splign:2.1.0" exon 568..700 /gene="Nudcd3" /inference="alignment:Splign:2.1.0" exon 701..844 /gene="Nudcd3" /inference="alignment:Splign:2.1.0" exon 845..3589 /gene="Nudcd3" /inference="alignment:Splign:2.1.0" ORIGIN
agccggtgtgaggcggtgcccactgtgttcgcgtccctcgggcagtagagccatggagcccggggctgctgagctttatgaccaggccctgctgggcatcctgcagcacgtgggcaatgtccaggactttctgcgcgtgctcttcggctttctctaccgcaagaccgacttctaccgcctgctgcgccatcctactgaccgcatgggcttcccgcccggggccgcacaggccctggtgttgcaggtctttaaaacatttgatcacatggcccgccaggatgatgagaaaaggaagaaggaactggaagagaaaatcagaaaaaaggaggaagaggccaaggcagtggcagctgccacagctgagaaggaagctgtgccagtcccagtgcaggaggtggagattgatgctaccacagcgttgagtggacctcgggaagtagaaaaggaggagctcccaggcccacagggccccgagcgcaaagtgacccatggctcggaggaggcagaagctccaggaacagctagcagtgctgctgaaggccctaaggaccctcctgtgctccccaggatccaggagcagttccagaaaaatcctgacagttacaatggtgccattcgtgagaactatacctggtcgcaagactacactgacctggaggtcagggtgccagtgcccaagcatgtggtgaaggggaagcaggtctctgtggcccttagcagtggctccatccgcgtggccatgttggaagaaaatggagagcgggtcctcatggaagggaagctcactcacaagatcaacaccgagagttccctctggagccttgagccgggcaagtgtgttttggtgccttcctggaaggaacgtcccacaacattcccgttggcccaaactcaatcacacgggcagctgcgaggagtaaagccatcctcactgggcacagtgcttccctgaatagaaatgaggttccgttactaaggaaggaaagggatataaatgctggtgagtcatcggcacagatcgggggatgctgaggtaagtttattcacactgagggtgaagtttttctgtgaggacattttgggagcactgttcagtcagtgacagtctggggtccctctgggaaattattatgttctgggaccaggcagataaaagaggacctggaaaatgaaagtgtatccaggaaatgatgaggtcacagtgaccttgtagagggcacctaattctgacccaatgaatggttcagagtgactttctaaaccactgagaaaagaggccaggaggcaggtgctcactttagcagtgcttatgccctgtcagtaagtagaaactggctgcaaggtcaggtgtcccaacctgtcgggaggtgggacctcataggaacctaagatcttgacatttggtatgttggtgacaatgtgggaagccctgggatgagagggaacatccttgcaggacgcctgcaggtggaccacagacacacctgggtacctcaggagacactagacacggtccttagcaaagtagagaggacgaccatggtcctgtgctgctggggggctgaggccaggctgctacttcagaggacttgcctagtcttagaaagtaactcagggtaaagggccggtacaatgttctttactctcaaatggttcataaacaaacattattatgttgtatgccaacacatagagtgcaagagctgctaaatgcctgtgtggctctctgtactttgagcaatgtgtaaatttgaagttatttgtaaataaatgagtggtattgcaagcatacaaggaaactcagcatcattaggggggaaaagtcaaaattacagtgagaggccttatatacctgtgagagtggctaagaagcccacagtgctcaatttgaaggagctgtggtaccctgaactcactgctgccgtgagcgccaggcggtgggcatagccagtgtgctcacattgcataacaacctactctatgctcccaagaggtggaaacacacagatcctcacgatagcttcctgcccaactgccaaaccttaggaacatctccatggccatggacagatagtgttcacctacgtcatggaatagtcttgccaagcgtcatagtccacaggatccagaaaggacgtgtgtgacaagctcacaagctgtgggtttcatggggaagacaccctggacctggacaagctggatggcaagatgagcaatgcagaatggagtggagggaggggcctggctgtgggtgggctgcagtggaggagatgaaactgcagcagggcgagttttgctgtgtgcaaactacacctccacaagtccaacttgttacagagtaacaaaatgttaaaacaaacacagctaatttaagcaagccatgggagtccttttgcctgggtgtggtctttagccaggaacccttgaggcctgttacatgaacattttttctttgttctcacacaactctgattctgtcttcagtatcaataacaccctaccccaccttctcagaactgagtgtattctaaccactttaagtagtttatttggaagattaaatgcccaaagtgtcttacctgggttccatagaagtatcactccaaggaagtcagtgatgcttagaacttgtcagctaacttgtcaacttctgggacatgaagctatttaaaaaataaaggataggtcctaggtgtgaggataaggagccagacagaacagcacatgaaatgctttgtggaaaaggaggccaggccagtgaagggtgaggagaatcacactagcactgcagccttacttaatctttgactgcccactcagagcattcacaaaatttttagaaataccgtcttggattttccaagcatctttggtgtggtctgctgccccagattcaagagcatcctggaccttaggagagaggtcactgaggaaaatactggcccgtgtatgcttgtatgtagccaggcaaaggaataacgattaagctgctgcatccctgaaaatagctataacaacaaccaaaaatcccaaatgtccacgagggagcagatggagcctttccttgtgcagcaccaggatgtccagctccaatggaaaacaatgaggtggattcttgaaacctgcagtagaggtgccaagtgagccagcagttccattcgtaggtaaatgccaaaggagccgaaagggggagaatggatggttaggttgtggtaagtttatcctgtggaatgctttcagcacggagaggaatgaagttctgctacaagccacagtacgatgtccttcagaaactctataataagtgaaataagtcaacacagcaatataaggtttcatttgtgtgacatctgatgagaccagtaattgtgccagaggtgtcggagaagatatttaagagactttattatggtaaaatgaagagcgactacaactggctgtaggcttctttctggagtgatgtttgagggtatagacatgacggctggttgcataccatcgtggatgtgccaaatgccattcgactgttcacctttggggaaaaaaagtgttatgtaatttcacaataaaaaaattgtttttaaaacaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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