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2024-04-19 16:28:36, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_001044295            1272 bp    mRNA    linear   ROD 22-MAR-2023
DEFINITION  Rattus norvegicus TPD52 like 1 (Tpd52l1), mRNA.
ACCESSION   NM_001044295 XM_001070150
VERSION     NM_001044295.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1272)
  AUTHORS   Boutros R and Byrne JA.
  TITLE     D53 (TPD52L1) is a cell cycle-regulated protein maximally expressed
            at the G2-M transition in breast cancer cells
  JOURNAL   Exp Cell Res 310 (1), 152-165 (2005)
   PUBMED   16112108
REFERENCE   2  (bases 1 to 1272)
  AUTHORS   Cho S, Ko HM, Kim JM, Lee JA, Park JE, Jang MS, Park SG, Lee DH,
            Ryu SE and Park BC.
  TITLE     Positive regulation of apoptosis signal-regulating kinase 1 by
            hD53L1
  JOURNAL   J Biol Chem 279 (16), 16050-16056 (2004)
   PUBMED   14761963
REFERENCE   3  (bases 1 to 1272)
  AUTHORS   Boutros R, Bailey AM, Wilson SH and Byrne JA.
  TITLE     Alternative splicing as a mechanism for regulating 14-3-3 binding:
            interactions between hD53 (TPD52L1) and 14-3-3 proteins
  JOURNAL   J Mol Biol 332 (3), 675-687 (2003)
   PUBMED   12963375
REFERENCE   4  (bases 1 to 1272)
  AUTHORS   Byrne JA, Nourse CR, Basset P and Gunning P.
  TITLE     Identification of homo- and heteromeric interactions between
            members of the breast carcinoma-associated D52 protein family using
            the yeast two-hybrid system
  JOURNAL   Oncogene 16 (7), 873-881 (1998)
   PUBMED   9484778
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC099809.1.
            
            On Aug 24, 2006 this sequence version replaced XM_001070150.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC099809.1, CA338998.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760384
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1272
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1p11"
     gene            1..1272
                     /gene="Tpd52l1"
                     /note="TPD52 like 1"
                     /db_xref="GeneID:689256"
                     /db_xref="RGD:1594796"
     exon            1..122
                     /gene="Tpd52l1"
                     /inference="alignment:Splign:2.1.0"
     CDS             104..595
                     /gene="Tpd52l1"
                     /note="tumor protein D52-like 1"
                     /codon_start=1
                     /product="tumor protein D53"
                     /protein_id="NP_001037760.1"
                     /db_xref="GeneID:689256"
                     /db_xref="RGD:1594796"
                     /translation="
MEAQAQGLLETEPLQGRDGDAIGSADLSSMLSEEEKDELKAELVQLEEEITTLRQVLSAKERHLVEIKQKLGMNLMNELKQNFSRSWHDMQTTTAYKKTHETLSHAGQKATAAFSNVGTAISRKFGDMRYSIRHSISMPAMRNSPTFKSFEERVETTVTSLKV"
     misc_feature    194..556
                     /gene="Tpd52l1"
                     /note="tumor protein D52 family; Region: TPD52; pfam04201"
                     /db_xref="CDD:427780"
     exon            123..238
                     /gene="Tpd52l1"
                     /inference="alignment:Splign:2.1.0"
     exon            239..387
                     /gene="Tpd52l1"
                     /inference="alignment:Splign:2.1.0"
     exon            388..489
                     /gene="Tpd52l1"
                     /inference="alignment:Splign:2.1.0"
     exon            490..528
                     /gene="Tpd52l1"
                     /inference="alignment:Splign:2.1.0"
     exon            529..589
                     /gene="Tpd52l1"
                     /inference="alignment:Splign:2.1.0"
     exon            590..606
                     /gene="Tpd52l1"
                     /inference="alignment:Splign:2.1.0"
     exon            607..1226
                     /gene="Tpd52l1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
ggcggcgtggctggcagtcttccgagctcgggcaccgctaccatctgctgctctgcgaggagtccgtggattccccgccgcgctcagctccacgccggccaccatggaggcgcaggcacaaggcttgttggagacggagccacttcaaggaagagatggggacgcaataggcagtgctgacctctctagcatgctttctgaggaggagaaggacgagctaaaggcagagttagttcagctagaagaggaaatcacaacattacgacaagttttgtcagcaaaagaaagacatctggttgagatcaaacagaaactcggcatgaacctgatgaacgagttaaagcagaacttcagcaggagctggcacgacatgcagaccacgactgcgtacaaaaaaacacacgaaaccctgagccacgcagggcagaaggcaacagcagctttcagtaatgtgggaactgccatcagcaggaagtttggcgatatgaggtactccatccgccattccataagtatgcctgccatgaggaattctcctactttcaaatcatttgaggagagggttgagacaactgttacaagcctcaaggtgtaaatgttttgcctacgaaagtaggtgggacaaaccacagtggtggcagttttgaggaggtcctgagctccacagcacacgccagctcccagaatgcttcagcaggcatccggcagaccagagaagaggatctgcagtgctaggcccagcctgggctgctgccggtcagtttgcctgctcatcccgttatgaagaccaaaatcccaccgggaaccccaagttttgacattgttatttaaatggggtctccaaaaagtttaatgaaatgatttctcttcgcacttgtgttgacgatggaccagtcgaccattactctggagtgtttacaaatgtcacctttaaaataggcaacctggagcacggtcctaactggtcctattcttgtctgtgtaactcaatgtatttcccaaacatgcagctactaattattagctttgcttttggctcagtctccataccactatgcatgtctgggagtgctgaggcctgtcagtgtgcagagccacaggggcactatttgatgactgtcgcctccagctggccaagtcactccaaacttcaccaaattgcttgtgatctctcacctacatcaatgtacatctatttaagtcattaaaataattcactatagcgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]