LOCUS       NM_001009499            1353 bp    mRNA    linear   ROD 22-MAR-2023
DEFINITION  Rattus norvegicus Ly49 inhibitory receptor 3 (Ly49i3), mRNA.
ACCESSION   NM_001009499 XM_579299
VERSION     NM_001009499.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1353)
  AUTHORS   Nylenna O, Naper C, Vaage JT, Woon PY, Gauguier D, Dissen E, Ryan
            JC and Fossum S.
  TITLE     The genes and gene organization of the Ly49 region of the rat
            natural killer cell gene complex
  JOURNAL   Eur J Immunol 35 (1), 261-272 (2005)
   PUBMED   15593300
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JACYVU010000151.1.
            
            On Oct 7, 2022 this sequence version replaced NM_001009499.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AY659932.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN06680441, SAMN09767679
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-200               JACYVU010000151.1  699482-699681       c
            201-290             JACYVU010000151.1  697993-698082       c
            291-509             JACYVU010000151.1  696896-697114       c
            510-652             JACYVU010000151.1  695158-695300       c
            653-756             JACYVU010000151.1  684661-684764       c
            757-1353            JACYVU010000151.1  679097-679693       c
FEATURES             Location/Qualifiers
     source          1..1353
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q42"
     gene            1..1353
                     /gene="Ly49i3"
                     /note="Ly49 inhibitory receptor 3"
                     /db_xref="GeneID:494208"
                     /db_xref="RGD:1359730"
     exon            1..200
                     /gene="Ly49i3"
                     /inference="alignment:Splign:2.1.0"
     CDS             89..931
                     /gene="Ly49i3"
                     /note="immunoreceptor Ly49i3"
                     /codon_start=1
                     /product="Ly49 inhibitory receptor 3"
                     /protein_id="NP_001009499.1"
                     /db_xref="GeneID:494208"
                     /db_xref="RGD:1359730"
                     /translation="

MTEQEVTYTTVRFHKSSVFHNKVRSKETLSAKENGHRESSVPWKLIVIALAILCSVLMVTVAALVTNIFQYSNEKHELQKTQNCHHNCSTIENDIKLKEEMLRNISVESVHYNAFLDLINREQKRWYKKTKTVLASPQHTGRCDEMHWFCYGIKCYYFTMDIRIWRECKQICQNYSLSFLKIDDKDELKFLQDHIIRDNYWIGSSYNNKKKEWSWIDNSPFNLDFVARTLLRKTGYCLYFSMSGLHDDDCGKRYLCICEKGMDKIPAPLCSVKETSHSAV"

     misc_feature    206..562
                     /gene="Ly49i3"
                     /note="Ly49-like protein, N-terminal region; Region: Ly49;
                     pfam08391"
                     /db_xref="CDD:429969"
     misc_feature    521..868
                     /gene="Ly49i3"
                     /note="C-type lectin-like domain (CTLD) of the type found
                     in natural killer cell receptors (NKRs); Region:
                     CLECT_NK_receptors_like; cd03593"
                     /db_xref="CDD:153063"
     misc_feature    order(683..685,767..769,818..820,824..829)
                     /gene="Ly49i3"
                     /note="ligand binding surface [chemical binding]; other
                     site"
                     /db_xref="CDD:153063"
     exon            201..290
                     /gene="Ly49i3"
                     /inference="alignment:Splign:2.1.0"
     exon            291..509
                     /gene="Ly49i3"
                     /inference="alignment:Splign:2.1.0"
     exon            510..652
                     /gene="Ly49i3"
                     /inference="alignment:Splign:2.1.0"
     exon            653..756
                     /gene="Ly49i3"
                     /inference="alignment:Splign:2.1.0"
     exon            757..1353
                     /gene="Ly49i3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gtctaggtaccttcctataggtggacatttaaactttgaaaaaaaaaacaattctcaaggctctagtatacttcatatattccagaagatgactgagcaagaggttacttacacaactgtgagatttcataagtcgtcagtgttccacaacaaagtgaggtctaaggagactctaagtgctaaagaaaatggccacagagagagttcagtcccctggaagctcattgtgatagctcttgcaatcctctgttcagttctgatggtaactgttgcagcattggtgacaaacatttttcagtatagtaatgaaaaacatgaactgcagaaaactcaaaactgtcaccataactgcagcaccattgaaaatgacatcaaattaaaggaagaaatgctgagaaatatttctgtagagagtgttcactacaatgcttttctagacttaatcaacagagaacaaaaaagatggtacaagaaaactaagactgttttagcttcccctcagcacacaggcaggtgtgatgaaatgcactggttctgctatggtataaaatgttattatttcaccatggatataagaatatggcgtgaatgtaaacagatctgtcagaactacagcttatcctttctgaagatagatgataaggatgaactgaagttccttcaggaccacattattcgtgacaattactggattggatcatcatataataacaaaaaaaaagaatggtcatggattgacaacagcccatttaatcttgattttgtggcaaggactttgctacgaaaaacaggatactgtctgtatttcagtatgtcaggtctacatgatgatgattgtggtaaaagatatctctgtatctgtgaaaagggaatggacaaaatccctgccccattgtgcagtgtgaaggaaacgtcacattctgctgtgtgaatagatagatgagctgcaaagggaagagtcttcttaaatttggcataagagcagacacagtattccctcttggcacatggagcagcttgcatgtggagaatggacttccttttttccaagacccaaacttttccctcacattgtttcctgaatgacacacagaaccacatggggaactcaatacataatgcacacatcatatcttatttacgatatttctatagcccttggcttgatagcacagttaatgactaatctgccattgtgggttttcatgtattggttagttactatttggtatttttttgatgtacaaaaagttagcattttaaaatccttttgagacgaggatctgtggaaaggaggactggagggggtgatgaccggactgttaatcaataaaataattttgaaaactttat

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