LOCUS       NM_001009495            1588 bp    mRNA    linear   ROD 02-APR-2023
DEFINITION  Rattus norvegicus Ly49 inhibitory receptor 4 (Ly49i4), mRNA.
ACCESSION   NM_001009495 XM_008763405 XM_346717
VERSION     NM_001009495.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1588)
  AUTHORS   Kveberg L, Dai KZ, Dissen E, Ryan JC, Rolstad B, Vaage JT and Naper
            C.
  TITLE     Strain-dependent expression of four structurally related rat Ly49
            receptors; correlation with NK gene complex haplotype and NK
            alloreactivity
  JOURNAL   Immunogenetics 58 (11), 905-916 (2006)
   PUBMED   17028855
REFERENCE   2  (bases 1 to 1588)
  AUTHORS   Nylenna O, Naper C, Vaage JT, Woon PY, Gauguier D, Dissen E, Ryan
            JC and Fossum S.
  TITLE     The genes and gene organization of the Ly49 region of the rat
            natural killer cell gene complex
  JOURNAL   Eur J Immunol 35 (1), 261-272 (2005)
   PUBMED   15593300
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JACYVU010000151.1.
            
            On or before Mar 30, 2023 this sequence version replaced
            XM_008763405.3, NM_001009495.2.
            
            ##Evidence-Data-START##
            CDS exon combination :: AY649834.1 [ECO:0000331]
            RNAseq introns       :: single sample supports all introns
                                    SAMN16676788 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-235               JACYVU010000151.1  505215-505449       c
            236-434             JACYVU010000151.1  503399-503597       c
            435-524             JACYVU010000151.1  501905-501994       c
            525-743             JACYVU010000151.1  500813-501031       c
            744-886             JACYVU010000151.1  499091-499233       c
            887-990             JACYVU010000151.1  489383-489486       c
            991-1588            JACYVU010000151.1  483853-484450       c
FEATURES             Location/Qualifiers
     source          1..1588
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q42"
     gene            1..1588
                     /gene="Ly49i4"
                     /note="Ly49 inhibitory receptor 4"
                     /db_xref="GeneID:494204"
                     /db_xref="RGD:1549758"
     exon            1..235
                     /gene="Ly49i4"
                     /inference="alignment:Splign:2.1.0"
     exon            236..434
                     /gene="Ly49i4"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    272..274
                     /gene="Ly49i4"
                     /note="upstream in-frame stop codon"
     CDS             323..1165
                     /gene="Ly49i4"
                     /codon_start=1
                     /product="Ly49 inhibitory receptor 4"
                     /protein_id="NP_001009495.1"
                     /db_xref="GeneID:494204"
                     /db_xref="RGD:1549758"
                     /translation="

MTEQEVTYTTVRFHKSSVFQNKVRSEDTRSAKENGHRESSVPWKLIVIALGILCSVLMVTVAALVTNIFQYSNEKHELQKTQNRQHNCSTMEKDINLKEETLRNMSVESVHYNALLDLINREQNRWYKKTKTVLASPQHTGGCDEMHWFCYGIKCYYFTMDIRIWHECKQTCQNYSLSFLKIDDKDELKFLQDHIIRDNYWIGSSYNNKKKEWSWIDNSPFNLDFVARNSLRKTGYCMYFSMAGLHDDDCGKRYLCICEKGMDKIPAPLCSVKETSHSAV"

     misc_feature    440..796
                     /gene="Ly49i4"
                     /note="Ly49-like protein, N-terminal region; Region: Ly49;
                     pfam08391"
                     /db_xref="CDD:429969"
     misc_feature    755..1102
                     /gene="Ly49i4"
                     /note="C-type lectin-like domain (CTLD) of the type found
                     in natural killer cell receptors (NKRs); Region:
                     CLECT_NK_receptors_like; cd03593"
                     /db_xref="CDD:153063"
     misc_feature    order(917..919,1001..1003,1052..1054,1058..1063)
                     /gene="Ly49i4"
                     /note="ligand binding surface [chemical binding]; other
                     site"
                     /db_xref="CDD:153063"
     exon            435..524
                     /gene="Ly49i4"
                     /inference="alignment:Splign:2.1.0"
     exon            525..743
                     /gene="Ly49i4"
                     /inference="alignment:Splign:2.1.0"
     exon            744..886
                     /gene="Ly49i4"
                     /inference="alignment:Splign:2.1.0"
     exon            887..990
                     /gene="Ly49i4"
                     /inference="alignment:Splign:2.1.0"
     exon            991..1588
                     /gene="Ly49i4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

aatatgttgcttctttgctttgctctcatagtcagctttcattaagcaatttcctctttttggtttggtcaagaggaggggcagaaaatcatgaggttgagtaccactcaaaagaaatttagttttgtcatttttctctgagcctcttagggtatacagacatgtaaaggtcaacttttccaccaattgggtgaccaatttcctccacgagaatcgcattgggatagagagacagatctaggtaccttcctataggtggacatttaaactttgaaaaaaaaacaattctcaaggctctagtatacttcatatattccaaaatatgactgagcaagaggttacttacacaactgtgagatttcataagtcgtcagtgttccagaacaaagtgaggtctgaggatactcgaagtgctaaagaaaatggccacagagagagttcagtcccctggaagctcattgtgatagcacttggaatcctctgctccgttctgatggtaactgttgcagcattggtgacaaacatttttcagtatagtaatgaaaaacatgaactacagaaaactcaaaaccgtcagcataactgcagcaccatggaaaaggacatcaatttaaaggaagaaacgctgagaaatatgtctgtagagagtgttcactacaatgctcttctagacttaatcaacagagaacagaacagatggtacaagaaaactaagactgttttagcttcccctcagcacacaggcgggtgtgatgaaatgcactggttctgctatggtataaaatgttattatttcaccatggatataaggatatggcatgaatgtaaacagacctgtcagaactacagcttgtcctttctgaagatagatgataaggatgaactgaagttccttcaggaccacattattcgtgacaattactggattggatcatcatataataacaaaaaaaaggaatggtcatggattgacaacagcccatttaatcttgattttgtggcaaggaattcgctaagaaaaacaggatactgtatgtatttcagtatggcaggtctacatgatgatgattgtggtaaaagatatctctgtatctgtgaaaagggaatggacaaaatccctgccccattgtgcagtgtgaaggaaacgtcacattctgctgtgtgaatagagagatgagctgcaaagggaagaagtcttcgtaaatttggcataacagcagacacagtattccctcttggcacatggaggagcttgcatgtggagaatggacgtcctttttttccaagacccaaacgattccctcacattgtctcctgaatgacacacagaaccacatggagaactcaatacataatgcacacatcacatcttctttaggatatttctatagcccttggcttgatagcacaattaatgactaatctgccgttgtgggttttcatgtattggttagttactatttggtatttttttgatgtacaaaaagttagcattttaaaatccttttgagacgaggaactgtggaaaggaggactggagggggtgatgactggactgttaataaataaaataattttgaaaacctta

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