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Previous release (v1)
2024-03-29 15:21:05, GGRNA : RefSeq release 222 (Jan, 2024)
Summary:
Results:
Matches are highlighted with green background.
Overlapping matches are dark colored.
misc_feature 303..695 /gene="Ago1" /gene_synonym="Eif2c1" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 723..875 /gene="Ago1" /gene_synonym="Eif2c1" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 876..1238 /gene="Ago1" /gene_synonym="Eif2c1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and...
misc_feature 459..848 /gene="Ago4" /gene_synonym="Eif2c4" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 879..1031 /gene="Ago4" /gene_synonym="Eif2c4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1032..1394 /gene="Ago4" /gene_synonym="Eif2c4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and...
misc_feature 468..752 /gene="Ago3" /gene_synonym="Eif2c3" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 780..932 /gene="Ago3" /gene_synonym="Eif2c3" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 933..1295 /gene="Ago3" /gene_synonym="Eif2c3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and...
misc_feature 303..695 /gene="Ago1" /gene_synonym="Eif2c1" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 723..875 /gene="Ago1" /gene_synonym="Eif2c1" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 876..1238 /gene="Ago1" /gene_synonym="Eif2c1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and...
misc_feature 450..839 /gene="Ago4" /gene_synonym="Eif2c4" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 870..1022 /gene="Ago4" /gene_synonym="Eif2c4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1023..1373 /gene="Ago4" /gene_synonym="Eif2c4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and...
misc_feature 306..530 /gene="Ago2" /gene_synonym="eIF2C 2; Eif2c2" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 558..710 /gene="Ago2" /gene_synonym="eIF2C 2; Eif2c2" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 711..1073 /gene="Ago2" /gene_synonym="eIF2C 2; Eif2c2" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the...
misc_feature 298..690 /gene="Ago1" /gene_synonym="Eif2c1" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 718..870 /gene="Ago1" /gene_synonym="Eif2c1" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 871..1233 /gene="Ago1" /gene_synonym="Eif2c1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and...
misc_feature 232..384 /gene="Ago1" /gene_synonym="Eif2c1" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 385..747 /gene="Ago1" /gene_synonym="Eif2c1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order...
misc_feature 232..384 /gene="Ago1" /gene_synonym="Eif2c1" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 385..747 /gene="Ago1" /gene_synonym="Eif2c1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order...
misc_feature <1509..1727 /gene="Ago3" /gene_synonym="Eif2c3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1521..1523,1566..1568,1608..1610,1620..1622, 1674..1676,1695..1697,1701..1703) /gene="Ago3" /gene_synonym="Eif2c3" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="...
misc_feature 177..518 /gene="Ago1" /gene_synonym="Eif2c1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(312..314,357..359,399..401,411..413,465..467, 486..488,492..494) /gene="Ago1" /gene_synonym="Eif2c1" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_...
misc_feature 184..525 /gene="Ago3" /gene_synonym="Eif2c3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(319..321,364..366,406..408,418..420,472..474, 493..495,499..501) /gene="Ago3" /gene_synonym="Eif2c3" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_...
misc_feature 2881..3222 /gene="Ago3" /gene_synonym="Eif2c3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(3016..3018,3061..3063,3103..3105,3115..3117, 3169..3171,3190..3192,3196..3198) /gene="Ago3" /gene_synonym="Eif2c3" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD...
misc_feature 2917..3258 /gene="Ago3" /gene_synonym="Eif2c3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(3052..3054,3097..3099,3139..3141,3151..3153, 3205..3207,3226..3228,3232..3234) /gene="Ago3" /gene_synonym="Eif2c3" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD...
Eif2c2" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 1080..1097 /gene="Ago2" /gene_synonym="eIF2C 2; Eif2c2" /note="propagated from UniProtKB/Swiss-Prot (Q9QZ81.2); Region: Interaction with guide RNA. /evidence=ECO:0000250" misc_feature 1308..1310 /gene="Ago2" /gene_synonym="eIF2C 2; Eif2c2" /note="Phosphoserine. /evidence=ECO:0000250|UniProtKB:Q9UKV8; propagated from UniProtKB/Swiss-Prot (Q9QZ81.2); phosphorylation site" misc_feature 1323..2600 /gene="Ago2" /gene_synonym="eIF2C 2; Eif2c2" /note="PIWI domain, Argonaute-like subfamily. Argonaute is...
LOCUS XR_005504456 2141 bp RNA linear ROD 11-JUN-2023 DEFINITION PREDICTED: Rattus norvegicus argonaute RISC catalytic component 3 (Ago3), transcript variant X4, misc_RNA. ACCESSION XR_005504456 VERSION XR_005504456.1 DBLINK BioProject: PRJNA677964 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is...
misc_feature 6425..6754 /gene="Tnrc6c" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" misc_feature 6761..6874 /gene="Tnrc6c" /note="UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins; Region: UBA_TNR6C; cd14283" /db_xref="CDD:270469" misc_feature 7025..7702 /gene="Tnrc6c" /note="M domain of GW182; Region: M_domain; pfam12938" /db_xref="CDD:432890" misc_feature 7727..8491 /gene="Tnrc6c" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:435458" misc_feature 8477..8740 /gene="Tnrc6c" /note="...
misc_feature 590..868 /gene="Piwil1" /note="GAGE protein; Region: GAGE; pfam05831" /db_xref="CDD:428642" misc_feature 1232..1369 /gene="Piwil1" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1379..1795 /gene="Piwil1" /note="This domain is named PAZ after the proteins Piwi Argonaut and Zwille; Region: PAZ; smart00949" /db_xref="CDD:198017" misc_feature order(1511..1513,1550..1552,1574..1576,1586..1588, 1640..1642,1688..1690,1694..1696) /gene="Piwil1" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239211"...
misc_feature 301..579 /gene="Piwil1" /note="GAGE protein; Region: GAGE; pfam05831" /db_xref="CDD:428642" misc_feature 943..1080 /gene="Piwil1" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1090..1506 /gene="Piwil1" /note="This domain is named PAZ after the proteins Piwi Argonaut and Zwille; Region: PAZ; smart00949" /db_xref="CDD:198017" misc_feature order(1222..1224,1261..1263,1285..1287,1297..1299, 1351..1353,1399..1401,1405..1407) /gene="Piwil1" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239211" misc...
misc_feature 3181..3594 /gene="Tnrc6b" /gene_synonym="Cbl27" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" misc_feature 4369..5205 /gene="Tnrc6b" /gene_synonym="Cbl27" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:435458" misc_feature 5209..5457 /gene="Tnrc6b" /gene_synonym="Cbl27" /note="RNA recognition motif (RRM) found in vertebrate trinucleotide repeat-containing gene 6B protein (TNRC6B); Region: RRM_TNRC6B; cd12712" /db_xref="CDD:410111" exon 361..428 /gene="Tnrc6b" /gene_synonym="Cbl27" /inference="alignment:Splign:2.1.0"...
misc_feature 1162..1305 /gene="Piwil2" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1306..1659 /gene="Piwil2" /note="PAZ domain, Piwi_like subfamily. In multi-cellular organisms, the Piwi protein appears to be essential for the maintenance of germline stem cells. In the Drosophila male germline, Piwi was shown to be involved in the silencing of retrotransposons in the...; Region: PAZ_piwi_like; cd02845" /db_xref="CDD:239211" misc_feature order(1438..1440,1477..1479,1501..1503,1513..1515, 1567..1569,1618..1620,1624..1626) /gene="Piwil2" /note="...
misc_feature 1161..1304 /gene="Piwil2" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1305..1658 /gene="Piwil2" /note="PAZ domain, Piwi_like subfamily. In multi-cellular organisms, the Piwi protein appears to be essential for the maintenance of germline stem cells. In the Drosophila male germline, Piwi was shown to be involved in the silencing of retrotransposons in the...; Region: PAZ_piwi_like; cd02845" /db_xref="CDD:239211" misc_feature order(1437..1439,1476..1478,1500..1502,1512..1514, 1566..1568,1617..1619,1623..1625) /gene="Piwil2" /note="...
misc_feature 2783..3166 /gene="Tnrc6b" /gene_synonym="Cbl27" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" misc_feature 3941..4777 /gene="Tnrc6b" /gene_synonym="Cbl27" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:435458" misc_feature 4781..5029 /gene="Tnrc6b" /gene_synonym="Cbl27" /note="RNA recognition motif (RRM) found in vertebrate trinucleotide repeat-containing gene 6B protein (TNRC6B); Region: RRM_TNRC6B; cd12712" /db_xref="CDD:410111" ORIGIN //...
misc_feature 4745..5158 /gene="Tnrc6b" /gene_synonym="Cbl27" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" misc_feature 6104..6940 /gene="Tnrc6b" /gene_synonym="Cbl27" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:435458" misc_feature 6944..7192 /gene="Tnrc6b" /gene_synonym="Cbl27" /note="RNA recognition motif (RRM) found in vertebrate trinucleotide repeat-containing gene 6B protein (TNRC6B); Region: RRM_TNRC6B; cd12712" /db_xref="CDD:410111" ORIGIN //...
misc_feature 2912..3325 /gene="Tnrc6b" /gene_synonym="Cbl27" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" misc_feature 4271..4930 /gene="Tnrc6b" /gene_synonym="Cbl27" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:435458" misc_feature 4934..5182 /gene="Tnrc6b" /gene_synonym="Cbl27" /note="RNA recognition motif (RRM) found in vertebrate trinucleotide repeat-containing gene 6B protein (TNRC6B); Region: RRM_TNRC6B; cd12712" /db_xref="CDD:410111" ORIGIN //...
misc_feature 2783..3166 /gene="Tnrc6b" /gene_synonym="Cbl27" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" misc_feature 4112..4948 /gene="Tnrc6b" /gene_synonym="Cbl27" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:435458" misc_feature 4952..5200 /gene="Tnrc6b" /gene_synonym="Cbl27" /note="RNA recognition motif (RRM) found in vertebrate trinucleotide repeat-containing gene 6B protein (TNRC6B); Region: RRM_TNRC6B; cd12712" /db_xref="CDD:410111" ORIGIN //...
misc_feature 4337..4750 /gene="Tnrc6b" /gene_synonym="Cbl27" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" misc_feature 5696..6532 /gene="Tnrc6b" /gene_synonym="Cbl27" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:435458" misc_feature 6536..6784 /gene="Tnrc6b" /gene_synonym="Cbl27" /note="RNA recognition motif (RRM) found in vertebrate trinucleotide repeat-containing gene 6B protein (TNRC6B); Region: RRM_TNRC6B; cd12712" /db_xref="CDD:410111" ORIGIN //...
misc_feature 3389..3802 /gene="Tnrc6b" /gene_synonym="Cbl27" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" misc_feature 4748..5584 /gene="Tnrc6b" /gene_synonym="Cbl27" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:435458" misc_feature 5588..5836 /gene="Tnrc6b" /gene_synonym="Cbl27" /note="RNA recognition motif (RRM) found in vertebrate trinucleotide repeat-containing gene 6B protein (TNRC6B); Region: RRM_TNRC6B; cd12712" /db_xref="CDD:410111" ORIGIN //...
misc_feature 2984..3397 /gene="Tnrc6b" /gene_synonym="Cbl27" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" misc_feature 4343..5179 /gene="Tnrc6b" /gene_synonym="Cbl27" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:435458" misc_feature 5183..5431 /gene="Tnrc6b" /gene_synonym="Cbl27" /note="RNA recognition motif (RRM) found in vertebrate trinucleotide repeat-containing gene 6B protein (TNRC6B); Region: RRM_TNRC6B; cd12712" /db_xref="CDD:410111" ORIGIN //...
misc_feature 3062..3475 /gene="Tnrc6b" /gene_synonym="Cbl27" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" misc_feature 4421..5257 /gene="Tnrc6b" /gene_synonym="Cbl27" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:435458" misc_feature 5261..5509 /gene="Tnrc6b" /gene_synonym="Cbl27" /note="RNA recognition motif (RRM) found in vertebrate trinucleotide repeat-containing gene 6B protein (TNRC6B); Region: RRM_TNRC6B; cd12712" /db_xref="CDD:410111" ORIGIN //...
misc_feature 3153..3566 /gene="Tnrc6b" /gene_synonym="Cbl27" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" misc_feature 4512..5348 /gene="Tnrc6b" /gene_synonym="Cbl27" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:435458" misc_feature 5352..5600 /gene="Tnrc6b" /gene_synonym="Cbl27" /note="RNA recognition motif (RRM) found in vertebrate trinucleotide repeat-containing gene 6B protein (TNRC6B); Region: RRM_TNRC6B; cd12712" /db_xref="CDD:410111" ORIGIN //...
misc_feature 4429..4842 /gene="Tnrc6b" /gene_synonym="Cbl27" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" misc_feature 5788..6624 /gene="Tnrc6b" /gene_synonym="Cbl27" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:435458" misc_feature 6628..6876 /gene="Tnrc6b" /gene_synonym="Cbl27" /note="RNA recognition motif (RRM) found in vertebrate trinucleotide repeat-containing gene 6B protein (TNRC6B); Region: RRM_TNRC6B; cd12712" /db_xref="CDD:410111" ORIGIN //...
misc_feature 3825..4238 /gene="Tnrc6b" /gene_synonym="Cbl27" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" misc_feature 5184..6020 /gene="Tnrc6b" /gene_synonym="Cbl27" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:435458" misc_feature 6024..6272 /gene="Tnrc6b" /gene_synonym="Cbl27" /note="RNA recognition motif (RRM) found in vertebrate trinucleotide repeat-containing gene 6B protein (TNRC6B); Region: RRM_TNRC6B; cd12712" /db_xref="CDD:410111" ORIGIN //...
misc_feature 3131..3544 /gene="Tnrc6b" /gene_synonym="Cbl27" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" misc_feature 4490..5326 /gene="Tnrc6b" /gene_synonym="Cbl27" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:435458" misc_feature 5330..5578 /gene="Tnrc6b" /gene_synonym="Cbl27" /note="RNA recognition motif (RRM) found in vertebrate trinucleotide repeat-containing gene 6B protein (TNRC6B); Region: RRM_TNRC6B; cd12712" /db_xref="CDD:410111" ORIGIN //...
misc_feature 3222..3635 /gene="Tnrc6b" /gene_synonym="Cbl27" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" misc_feature 4581..5417 /gene="Tnrc6b" /gene_synonym="Cbl27" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:435458" misc_feature 5421..5669 /gene="Tnrc6b" /gene_synonym="Cbl27" /note="RNA recognition motif (RRM) found in vertebrate trinucleotide repeat-containing gene 6B protein (TNRC6B); Region: RRM_TNRC6B; cd12712" /db_xref="CDD:410111" ORIGIN //...
misc_feature 3217..3600 /gene="Tnrc6a" /gene_synonym="Tnrc6" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" misc_feature 3877..4434 /gene="Tnrc6a" /gene_synonym="Tnrc6" /note="M domain of GW182; Region: M_domain; pfam12938" /db_xref="CDD:432890" misc_feature 4507..5292 /gene="Tnrc6a" /gene_synonym="Tnrc6" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:435458" misc_feature 5314..5589 /gene="Tnrc6a" /gene_synonym="Tnrc6" /note="RNA recognition motif (RRM) found in vertebrate GW182 autoantigen; Region: RRM_TNRC6A; cd12711" /db_xref="...
misc_feature 7756..8085 /gene="Tnrc6c" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" misc_feature 8092..8205 /gene="Tnrc6c" /note="UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins; Region: UBA_TNR6C; cd14283" /db_xref="CDD:270469" misc_feature <8341..8859 /gene="Tnrc6c" /note="M domain of GW182; Region: M_domain; pfam12938" /db_xref="CDD:432890" misc_feature 8884..9648 /gene="Tnrc6c" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:435458" misc_feature 9634..9897 /gene="Tnrc6c" /note...
misc_feature 3548..3931 /gene="Tnrc6a" /gene_synonym="Tnrc6" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" misc_feature <4163..4618 /gene="Tnrc6a" /gene_synonym="Tnrc6" /note="M domain of GW182; Region: M_domain; pfam12938" /db_xref="CDD:432890" misc_feature 4691..5476 /gene="Tnrc6a" /gene_synonym="Tnrc6" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:435458" misc_feature 5498..5773 /gene="Tnrc6a" /gene_synonym="Tnrc6" /note="RNA recognition motif (RRM) found in vertebrate GW182 autoantigen; Region: RRM_TNRC6A; cd12711" /db_xref="...
misc_feature 3551..3934 /gene="Tnrc6a" /gene_synonym="Tnrc6" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" misc_feature 4211..4699 /gene="Tnrc6a" /gene_synonym="Tnrc6" /note="M domain of GW182; Region: M_domain; pfam12938" /db_xref="CDD:432890" misc_feature 4772..5557 /gene="Tnrc6a" /gene_synonym="Tnrc6" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:435458" misc_feature 5579..5854 /gene="Tnrc6a" /gene_synonym="Tnrc6" /note="RNA recognition motif (RRM) found in vertebrate GW182 autoantigen; Region: RRM_TNRC6A; cd12711" /db_xref="...
misc_feature 3387..3770 /gene="Tnrc6a" /gene_synonym="Tnrc6" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" misc_feature 4047..4604 /gene="Tnrc6a" /gene_synonym="Tnrc6" /note="M domain of GW182; Region: M_domain; pfam12938" /db_xref="CDD:432890" misc_feature 4677..5462 /gene="Tnrc6a" /gene_synonym="Tnrc6" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:435458" misc_feature 5484..5759 /gene="Tnrc6a" /gene_synonym="Tnrc6" /note="RNA recognition motif (RRM) found in vertebrate GW182 autoantigen; Region: RRM_TNRC6A; cd12711" /db_xref="...
misc_feature 3551..3901 /gene="Tnrc6a" /gene_synonym="Tnrc6" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" misc_feature 4178..4735 /gene="Tnrc6a" /gene_synonym="Tnrc6" /note="M domain of GW182; Region: M_domain; pfam12938" /db_xref="CDD:432890" misc_feature 4808..5593 /gene="Tnrc6a" /gene_synonym="Tnrc6" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:435458" misc_feature 5615..5890 /gene="Tnrc6a" /gene_synonym="Tnrc6" /note="RNA recognition motif (RRM) found in vertebrate GW182 autoantigen; Region: RRM_TNRC6A; cd12711" /db_xref="...
misc_feature 3550..3933 /gene="Tnrc6a" /gene_synonym="Tnrc6" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" misc_feature 4210..4767 /gene="Tnrc6a" /gene_synonym="Tnrc6" /note="M domain of GW182; Region: M_domain; pfam12938" /db_xref="CDD:432890" misc_feature 4840..5625 /gene="Tnrc6a" /gene_synonym="Tnrc6" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:435458" misc_feature 5647..5922 /gene="Tnrc6a" /gene_synonym="Tnrc6" /note="RNA recognition motif (RRM) found in vertebrate GW182 autoantigen; Region: RRM_TNRC6A; cd12711" /db_xref="...
misc_feature 4530..4859 /gene="Tnrc6c" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" misc_feature 4866..4979 /gene="Tnrc6c" /note="UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins; Region: UBA_TNR6C; cd14283" /db_xref="CDD:270469" misc_feature 5130..5807 /gene="Tnrc6c" /note="M domain of GW182; Region: M_domain; pfam12938" /db_xref="CDD:432890" misc_feature 5832..6596 /gene="Tnrc6c" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:435458" misc_feature 6582..6845 /gene="Tnrc6c" /note="...
misc_feature 7756..8085 /gene="Tnrc6c" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" misc_feature 8092..8205 /gene="Tnrc6c" /note="UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins; Region: UBA_TNR6C; cd14283" /db_xref="CDD:270469" misc_feature 8356..9033 /gene="Tnrc6c" /note="M domain of GW182; Region: M_domain; pfam12938" /db_xref="CDD:432890" misc_feature 9058..9822 /gene="Tnrc6c" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:435458" misc_feature 9808..10071 /gene="Tnrc6c" /note...
misc_feature 7756..8085 /gene="Tnrc6c" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" misc_feature 8092..8205 /gene="Tnrc6c" /note="UBA domain found in trinucleotide repeat-containing gene 6C protein (TNRC6C) and similar proteins; Region: UBA_TNR6C; cd14283" /db_xref="CDD:270469" misc_feature 8329..9009 /gene="Tnrc6c" /note="M domain of GW182; Region: M_domain; pfam12938" /db_xref="CDD:432890" misc_feature 9034..9798 /gene="Tnrc6c" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:435458" misc_feature 9784..10047 /gene="Tnrc6c" /note...
and adipocyte differentiation JOURNAL J Clin Invest 125 (4), 1509-1522 (2015) PUBMED 25751060 REFERENCE 3 (bases 1 to 97) AUTHORS Polikepahad S and Corry DB. TITLE Profiling of T helper cell-derived small RNAs reveals unique antisense transcripts and differential association of miRNAs with argonaute proteins 1 and 2 JOURNAL Nucleic Acids Res 41 (2), 1164-1177 (2013) PUBMED 23185045 REFERENCE 4 (bases 1 to 97) AUTHORS Pogribny IP, Starlard-Davenport A, Tryndyak VP, Han T, Ross SA, Rusyn I and Beland FA. TITLE Difference in expression of hepatic microRNAs miR-29c, miR-34a, miR-155, and miR-200b...
loss JOURNAL PLoS One 8 (4), e62786 (2013) PUBMED 23646144 REMARK Publication Status: Online-Only REFERENCE 4 (bases 1 to 70) AUTHORS Polikepahad S and Corry DB. TITLE Profiling of T helper cell-derived small RNAs reveals unique antisense transcripts and differential association of miRNAs with argonaute proteins 1 and 2 JOURNAL Nucleic Acids Res 41 (2), 1164-1177 (2013) PUBMED 23185045 REFERENCE 5 (bases 1 to 70) AUTHORS Linsen SE, de Wit E, de Bruijn E and Cuppen E. TITLE Small RNA expression and strain specificity in the rat JOURNAL BMC Genomics 11, 249 (2010) PUBMED 20403161 REMARK...
db_xref="GeneID:102466617" /db_xref="miRBase:MI0021533" /db_xref="RGD:7489047" ORIGIN // REFERENCE 1 (bases 1 to 64) AUTHORS Polikepahad S and Corry DB. TITLE Profiling of T helper cell-derived small RNAs reveals unique antisense transcripts and differential association of miRNAs with argonaute proteins 1 and 2 JOURNAL Nucleic Acids Res 41 (2), 1164-1177 (2013) PUBMED 23185045 REFERENCE 2 (bases 1 to 64) AUTHORS Clokie SJ, Lau P, Kim HH, Coon SL and Klein DC. TITLE MicroRNAs in the pineal gland: miR-483 regulates melatonin synthesis by targeting arylalkylamine N-acetyltransferase JOURNAL J...
and preimplantation embryos JOURNAL Nucleic Acids Res 41 (10), 5483-5493 (2013) PUBMED 23571754 REFERENCE 4 (bases 1 to 85) AUTHORS Polikepahad S and Corry DB. TITLE Profiling of T helper cell-derived small RNAs reveals unique antisense transcripts and differential association of miRNAs with argonaute proteins 1 and 2 JOURNAL Nucleic Acids Res 41 (2), 1164-1177 (2013) PUBMED 23185045 REFERENCE 5 (bases 1 to 85) AUTHORS Qian L, Wythe JD, Liu J, Cartry J, Vogler G, Mohapatra B, Otway RT, Huang Y, King IN, Maillet M, Zheng Y, Crawley T, Taghli-Lamallem O, Semsarian C, Dunwoodie S, Winlaw D,...
function in rats with myocardial ischemia-reperfusion injury through MEK-ERK signaling pathway. REFERENCE 6 (bases 1 to 84) AUTHORS Polikepahad S and Corry DB. TITLE Profiling of T helper cell-derived small RNAs reveals unique antisense transcripts and differential association of miRNAs with argonaute proteins 1 and 2 JOURNAL Nucleic Acids Res 41 (2), 1164-1177 (2013) PUBMED 23185045 REFERENCE 7 (bases 1 to 84) AUTHORS Linsen SE, de Wit E, de Bruijn E and Cuppen E. TITLE Small RNA expression and strain specificity in the rat JOURNAL BMC Genomics 11, 249 (2010) PUBMED 20403161 REMARK...
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Redirect URI : http://ggrna.dbcls.jp/rn/Argonaute
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spe : rn |
query_string : Argonaute |
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download :
0.000 | 0.000 | search_start;
0.437 | 0.437 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:Argonaute)%7C(nt:Argonaute)%7C(aa:Argonaute))?source=Rattus norvegicus (Norway rat)?to=0&format=json
0.881 | 0.443 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:Argonaute)%7C(nt:Argonaute)%7C(aa:Argonaute))?source=Rattus norvegicus (Norway rat)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.886 | 0.005 | cgi_end;
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