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2024-04-19 05:33:15, GGRNA : RefSeq release 222 (Jan, 2024)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

Oryza sativa Japonica Group 26S proteasome non-ATPase regulatory subunit 6-like (LOC4336206), mRNA. (1584 bp)
Science Genome Sequencing & Analysis Group; RIKEN TITLE Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice JOURNAL Science 301 (5631), 376-379 (2003) PUBMED 12869764 REMARK Erratum:[Science. 2003 Sep;301(5641):1849] ggaggacgaaactagccttctctccttctctctcgtgttctctcccaatctcttcttgcggcggaagcaaagcgagaagcgaggcgactcttctccggcggcggcggcggcggaagcggcggcgagatggacggcggcgtaggcgaggaagggaagcagcagccgcacctggtgctggcgcacaagctgttcctgctctcgcacccggacgtggacgacctcgccaaggtcgacctccgcgccgatgtcctcgccgcagtcaaatccgatgatatggcgtctctgtacgagtcgctgggggccggcggcgtgctggagacggacgctgcgctgctcgcggagatgcgcggcag...
position 46
Synonym: OJ000223_09.5; OsJ_15241; OsRPN7; RPN7
NM_001402380.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278998 (LOC107278998), transcript variant X7, ncRNA. (1502 bp)
with support for all annotated introns" /db_xref="GeneID:107278998" ncRNA 1..1502 /ncRNA_class="lncRNA" /gene="LOC107278998" /product="uncharacterized LOC107278998, transcript variant X7" /db_xref="GeneID:107278998" ORIGIN // ccgccgcttacaggtgggtcccactccgcactgcaatcccttcccttccgcttcctctctcaatctcttcttgcctcgtctcttcccccaaatcgggcgaatcccaaatcaaccaaaccctagcccgcggcggccaccgcgatggccacctccacgcggctgcggcggcgacggccgcctccgccccttgcatgcctcccccaccgaggagcggtgtgccagtgccagaggcggcggcggcggcgaccggatcatggcgcttctcctgtcggtggacggccgcataaggtgtgggggtgacatcgcgtcggtcgagctcgacggcgtgcggtgacctcctcggcggcgcgttctccctcctccctctcctcgag...
position 61
XR_003238988.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278998 (LOC107278998), transcript variant X8, ncRNA. (1562 bp)
with support for all annotated introns" /db_xref="GeneID:107278998" ncRNA 1..1562 /ncRNA_class="lncRNA" /gene="LOC107278998" /product="uncharacterized LOC107278998, transcript variant X8" /db_xref="GeneID:107278998" ORIGIN // ccgccgcttacaggtgggtcccactccgcactgcaatcccttcccttccgcttcctctctcaatctcttcttgcctcgtctcttcccccaaatcgggcgaatcccaaatcaaccaaaccctagcccgcggcggccaccgcgatggccacctccacgcggctgcggcggcgacggccgcctccgccccttgcatgcctcccccaccgaggagcggtgtgccagtgccagaggcggcggcggcggcgaccggatcatggcgcttctcctgtcggtggacggccgcataaggtgtgggggtgacatcgcgtcggtcgagctcgacggcgtgcggtgacctcctcggcggcgcgttctccctcctccctctcctcgag...
position 61
XR_003238989.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278998 (LOC107278998), transcript variant X1, ncRNA. (1616 bp)
with support for all annotated introns" /db_xref="GeneID:107278998" ncRNA 1..1616 /ncRNA_class="lncRNA" /gene="LOC107278998" /product="uncharacterized LOC107278998, transcript variant X1" /db_xref="GeneID:107278998" ORIGIN // ccgccgcttacaggtgggtcccactccgcactgcaatcccttcccttccgcttcctctctcaatctcttcttgcctcgtctcttcccccaaatcgggcgaatcccaaatcaaccaaaccctagcccgcggcggccaccgcgatggccacctccacgcggctgcggcggcgacggccgcctccgccccttgcatgcctcccccaccgaggagcggtgtgccagtgccagaggcggcggcggcggcgaccggatcatggcgcttctcctgtcggtggacggccgcataaggtgtgggggtgacatcgcgtcggtcgagctcgacggcgtgcggtgacctcctcggcggcgcgttctccctcctccctctcctcgag...
position 61
XR_001540355.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278998 (LOC107278998), transcript variant X5, ncRNA. (1621 bp)
with support for all annotated introns" /db_xref="GeneID:107278998" ncRNA 1..1621 /ncRNA_class="lncRNA" /gene="LOC107278998" /product="uncharacterized LOC107278998, transcript variant X5" /db_xref="GeneID:107278998" ORIGIN // tccgccgcttacaggtgggtcccactccgcactgcaatcccttcccttccgcttcctctctcaatctcttcttgcctcgtctcttcccccaaatcgggcgaatcccaaatcaaccaaaccctagcccgcggcggccaccgcgatggccacctccacgcggctgcggcggcgacggccgcctccgccccttgcatgcctcccccaccgaggagcggtgtgccagtgccagaggcggcggcggcggcgaccggatcatggcgcttctcctgtcggtggacggccgcataaggtgtgggggtgacatcgcgtcggtcgagctcgacggcgtgcggtgacctcctcggcggcgcgttctccctcctccctctcctcga...
position 62
XR_003238986.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278998 (LOC107278998), transcript variant X3, ncRNA. (1693 bp)
with support for all annotated introns" /db_xref="GeneID:107278998" ncRNA 1..1693 /ncRNA_class="lncRNA" /gene="LOC107278998" /product="uncharacterized LOC107278998, transcript variant X3" /db_xref="GeneID:107278998" ORIGIN // tccgccgcttacaggtgggtcccactccgcactgcaatcccttcccttccgcttcctctctcaatctcttcttgcctcgtctcttcccccaaatcgggcgaatcccaaatcaaccaaaccctagcccgcggcggccaccgcgatggccacctccacgcggctgcggcggcgacggccgcctccgccccttgcatgcctcccccaccgaggagcggtgtgccagtgccagaggcggcggcggcggcgaccggatcatggcgcttctcctgtcggtggacggccgcataaggtgtgggggtgacatcgcgtcggtcgagctcgacggcgtgcggtgacctcctcggcggcgcgttctccctcctccctctcctcga...
position 62
XR_003238985.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278998 (LOC107278998), transcript variant X6, ncRNA. (1737 bp)
with support for all annotated introns" /db_xref="GeneID:107278998" ncRNA 1..1737 /ncRNA_class="lncRNA" /gene="LOC107278998" /product="uncharacterized LOC107278998, transcript variant X6" /db_xref="GeneID:107278998" ORIGIN // ttccgccgcttacaggtgggtcccactccgcactgcaatcccttcccttccgcttcctctctcaatctcttcttgcctcgtctcttcccccaaatcgggcgaatcccaaatcaaccaaaccctagcccgcggcggccaccgcgatggccacctccacgcggctgcggcggcgacggccgcctccgccccttgcatgcctcccccaccgaggagcggtgtgccagtgccagaggcggcggcggcggcgaccggatcatggcgcttctcctgtcggtggacggccgcataaggtgtgggggtgacatcgcgtcggtcgagctcgacggcgtgcggtgacctcctcggcggcgcgttctccctcctccctctcctcg...
position 63
XR_003238987.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266982 (LOC9266982), mRNA. (1924 bp)
caatgtgcaggagataaaaataagtccaggaatcatgctcttgatatatgaaagaacaccatgtcatgttcctttgaagatattgtcaattgaagatggaagaccactaaaatccttcacgcatttgttgcaccgtaataagaaaattgattttatcgagcaattcaatgaaaagctccttgtcaagcaagaagatgagaaccttcagatacttgatgtacggagttctgagctaattgaagtcagtgttaccaagtttatgactccatcagcattcatttttctgtacgagaacaatctcttcttgacattccgaaacaggacggttgctgtatggaattttcgaggagagctcgtgacctcatttgaagaccatttgctttggcatcaagattgtagcaccaacaatatctacattaccagtgatcaggatctgattatctcatactgcaaatctgaggcaggggttgatgatggtacagtacctccaattgggtctatcaacatgagtgacattatgactggcaaatgcatcgccaagattgctgctaatgatcccaccctccgtattggccctcgcaagaatggtaactctgagag...
position 1198
XM_015765258.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278998 (LOC107278998), transcript variant X2, ncRNA. (1989 bp)
with support for all annotated introns" /db_xref="GeneID:107278998" ncRNA 1..1989 /ncRNA_class="lncRNA" /gene="LOC107278998" /product="uncharacterized LOC107278998, transcript variant X2" /db_xref="GeneID:107278998" ORIGIN // tccgccgcttacaggtgggtcccactccgcactgcaatcccttcccttccgcttcctctctcaatctcttcttgcctcgtctcttcccccaaatcgggcgaatcccaaatcaaccaaaccctagcccgcggcggccaccgcgatggccacctccacgcggctgcggcggcgacggccgcctccgccccttgcatgcctcccccaccgaggagcggtgtgccagtgccagaggcggcggcggcggcgaccggatcatggcgcttctcctgtcggtggacggccgcataaggtgtgggggtgacatcgcgtcggtcgagctcgacggcgtgcggtgacctcctcggcggcgcgttctccctcctccctctcctcga...
position 62
XR_003238984.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
Oryza sativa Japonica Group kinesin-like protein KIN-7K, chloroplastic (LOC4349100), mRNA; nuclear gene for chloroplast product. (3715 bp)
ggaatacagaaatccagaatttgaacctcttcttgttcgtctcaaggctaaaattcaagagatgaaggagaaggaaactgattccttgggtgacaaagatggaaattcccatgtctgcaaagtatgttttgaatctgccactgctgcagttttgcttccttgtcggcatttttgcttgtgcaagccttgctcgcttgcctgttcagaatgccctctatgccgtacaagaatcgcagacaggataattaccttcacctaaagtgcatgttatcttaaaaggtaacttgaagcacccaatctcttcttgtaaaatcatcagtggtatatgattcttttttcccctagcaaagaaggtgcctttttatgttccttctgtgtttgtatcccaattctttttttttttggtttgctctatagctttcccagttcaacctgttctttgttgtacgagaagttacaagatataacttctctgcaaatatgtatagatatgcgactcgacagtataatacatttgcttttttttttctcctttggcttttgggaagtaaagcaaccaaagaacatgagatccaagagacagagactggtacactttgc...
position 3395
Synonym: KIN7K; OsJ_32142
NM_001423083.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
Oryza sativa Japonica Group cadmium/zinc-transporting ATPase HMA2-like (LOC4341965), mRNA. (3861 bp)
of International Science Genome Sequencing & Analysis Group; RIKEN TITLE Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice JOURNAL Science 301 (5631), 376-379 (2003) PUBMED 12869764 REMARK Erratum:[Science. 2003 Sep;301(5641):1849] ctatccccgattcgcacagccaatctcttcttgcttcctcctcctcctcctccagccgccgccgccgacgacgattcttggtagagagattcttgcgttgttttacctgcgtcttgttcttcttgggagttgggtggatcgattgatcgaggttttggaggttggaagaagtgtgtgttgtggtggggggtttgtagagagagagagggcaaaggcacgcaaagagggagagagtgaggagagatggcggcggagggagggaggtgtcagaagagctacttcgacgtgctggggatttgctgcccgtcggaggttcccctcgtcgagaagcttctg...
position 21
Synonym: HMA2; OsHMA2; OsJ_22530
NM_001402933.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group starch synthase 3, chloroplastic/amyloplastic (LOC9268758), transcript variant X4, mRNA. (6282 bp)
aaaaccatggcagggttagactatgtttaacttatgacgagcctctctcacacctgatatatgctggctctgacttcatccttgttccatccatctttgaaccttgcggtttgactcaacttgttgccatgcgctatggatccatccctattgttcggaaaaccggaggactttacgacactgttttcgacgtagaccatgacaaagaccgggctcgagttctaggccttgaaccaaatgggttcagctttgatggagctgactgtaatggtgtggattacgccctgaacagagcaatctcttcttggtttgaagcccgcggttggttccactccctctgcaaaagggtcatggagcaagactggtcctggaaccggcctgccctggactacattgaactgtaccattcagctcacaaattttgaggcccccatccaacggtggcaagagaaagcaagcattggcagatactacaaattaaatgaaacatggctcaaagttaaaatattttatctgagctgcagatacaaattaactcaaacatggttcaaagttaagatcttttatctgagctacacatatatatgcagaataaagact...
position 5719
XM_015795185.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group starch synthase 3, chloroplastic/amyloplastic (LOC9268758), transcript variant X1, mRNA. (6462 bp)
aaaaccatggcagggttagactatgtttaacttatgacgagcctctctcacacctgatatatgctggctctgacttcatccttgttccatccatctttgaaccttgcggtttgactcaacttgttgccatgcgctatggatccatccctattgttcggaaaaccggaggactttacgacactgttttcgacgtagaccatgacaaagaccgggctcgagttctaggccttgaaccaaatgggttcagctttgatggagctgactgtaatggtgtggattacgccctgaacagagcaatctcttcttggtttgaagcccgcggttggttccactccctctgcaaaagggtcatggagcaagactggtcctggaaccggcctgccctggactacattgaactgtaccattcagctcacaaattttgaggcccccatccaacggtggcaagagaaagcaagcattggcagatactacaaattaaatgaaacatggctcaaagttaaaatattttatctgagctgcagatacaaattaactcaaacatggttcaaagttaagatcttttatctgagctacacatatatatgcagaataaagact...
position 5899
XM_015795182.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group starch synthase 3, chloroplastic/amyloplastic (LOC9268758), transcript variant X3, mRNA. (7797 bp)
aaaaccatggcagggttagactatgtttaacttatgacgagcctctctcacacctgatatatgctggctctgacttcatccttgttccatccatctttgaaccttgcggtttgactcaacttgttgccatgcgctatggatccatccctattgttcggaaaaccggaggactttacgacactgttttcgacgtagaccatgacaaagaccgggctcgagttctaggccttgaaccaaatgggttcagctttgatggagctgactgtaatggtgtggattacgccctgaacagagcaatctcttcttggtttgaagcccgcggttggttccactccctctgcaaaagggtcatggagcaagactggtcctggaaccggcctgccctggactacattgaactgtaccattcagctcacaaattttgaggcccccatccaacggtggcaagagaaagcaagcattggcagatactacaaattaaatgaaacatggctcaaagttaaaatattttatctgagctgcagatacaaattaactcaaacatggttcaaagttaagatcttttatctgagctacacatatatatgcagaataaagact...
position 7234
XM_015795184.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group starch synthase 3, chloroplastic/amyloplastic (LOC9268758), transcript variant X2, mRNA. (7977 bp)
aaaaccatggcagggttagactatgtttaacttatgacgagcctctctcacacctgatatatgctggctctgacttcatccttgttccatccatctttgaaccttgcggtttgactcaacttgttgccatgcgctatggatccatccctattgttcggaaaaccggaggactttacgacactgttttcgacgtagaccatgacaaagaccgggctcgagttctaggccttgaaccaaatgggttcagctttgatggagctgactgtaatggtgtggattacgccctgaacagagcaatctcttcttggtttgaagcccgcggttggttccactccctctgcaaaagggtcatggagcaagactggtcctggaaccggcctgccctggactacattgaactgtaccattcagctcacaaattttgaggcccccatccaacggtggcaagagaaagcaagcattggcagatactacaaattaaatgaaacatggctcaaagttaaaatattttatctgagctgcagatacaaattaactcaaacatggttcaaagttaagatcttttatctgagctacacatatatatgcagaataaagact...
position 7414
XM_015795183.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI

Data Export:

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Debug Info:

Redirect URI : http://ggrna.dbcls.jp/os/comp%3acaagaagagattg
lang : en | div : | spe : os | query_string : comp:caagaagagattg | format : html | download : 

0.000 | 0.000 | search_start;
0.076 | 0.076 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:caatctcttcttg)?source=Oryza sativa Japonica Group (Japanese rice)?to=0&format=json
0.100 | 0.024 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:caatctcttcttg)?source=Oryza sativa Japonica Group (Japanese rice)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.103 | 0.002 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]