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2025-11-01 03:01:29, GGRNA : RefSeq release 232 (Sep, 2025)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

PREDICTED: Oryza sativa Japonica Group uncharacterized protein (LOC4329170), mRNA. (1120 bp)
gcctccacgctctacagcatggccgagatcagcggccgcgccgggggagaccccgaatccggcggcggcggcggcggcgcctccctctcgcccaccgaccaggtcctcttctcgcggcacctcctcgaggcatccctcatggggtattccttatttcttgctctagttattgaccggctccaccaatacatcagagagctacgtgggctaaagaagaatgttgaggccgtaactaagcataataaaatgttggaggaagcaaaacatggaagatctgaggagacaaagaaataccaagaagagattggtgctctcaatgaggatatgaagaaactgaagctacaagtccaagaaaagacagaggaagtccacgttgctgaggacaaggctcttgctattcggaaacaatctgaaagcctgctgcttgagtatgaccgtttgctggaggacaaccagcatctccgggagcagctgcagtcaattgaccacaggctctccagtccaaaataagttcaagtgtaatatttttttttcctatgggattggagaacctagtcaatatattgctgcagaaaattttccatcacagttttggaaaaa...
position 585
XM_015767827.3 - Oryza sativa Japonica Group (Japanese rice) - NCBI
Oryza sativa Japonica Group 26S proteasome non-ATPase regulatory subunit 6-like (LOC4336206), mRNA. (1584 bp)
Science Genome Sequencing & Analysis Group; RIKEN TITLE Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice JOURNAL Science 301 (5631), 376-379 (2003) PUBMED 12869764 REMARK Erratum:[Science. 2003 Sep;301(5641):1849] ggaggacgaaactagccttctctccttctctctcgtgttctctcccaatctcttcttgcggcggaagcaaagcgagaagcgaggcgactcttctccggcggcggcggcggcggaagcggcggcgagatggacggcggcgtaggcgaggaagggaagcagcagccgcacctggtgctggcgcacaagctgttcctgctctcgcacccggacgtggacgacctcgccaaggtcgacctccgcgccgatgtcctcgccgcagtcaaatccgatgatatggcgtctctgtacgagtcgctgggggccggcggcgtgctggagacggacgctgcgctgctcgcggagatgcgcggcag...
position 46
Synonym: OJ000223_09.5; OsJ_15241; OsRPN7; RPN7
NM_001402380.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group uncharacterized protein (LOC4346684), mRNA. (1439 bp)
gcctcctcgccgccgtcgcgacctcccccaagtgagacgtcacggcacggcaccgcacggtgggcaggtgtgaatacggtttattagtcttccaggtgggccccacctgtcagtgggggaaataagggtgatggccatttgggagggttggtgtggtgtggtggtgatggggagattgattgatttagctggtgggatttgcaatatttaggaagaaaattaatcaaagtgatttaaaaaatttggaggatgtagggggcaatgatttagctgttgcactgcatcagaaattcgcaagaagagattggagatttttcacatcggttgatggtgatcacacattggggatgatgatgatgatgatgatctattcatgtatgtacaattaattactagcttttgtaccaccattaattctttgattcatgttgtggtgatcaacaacaacagagatgagaatgataaaatgggaaaagcatcattaccactct
position 1243
XM_015795982.3 - Oryza sativa Japonica Group (Japanese rice) - NCBI
Oryza sativa Japonica Group aspartic proteinase-like (LOC4337744), transcript variant 2, mRNA. (1884 bp)
PUBMED 12869764 REMARK Erratum:[Science. 2003 Sep;301(5641):1849] ggcttccccactctctcttcttcttgggaggctgggagctaccagcacaacacaccaaggaagctgagcaggtgcgttgatttcttgatatcatggccaagaggcacctcttgttggtgacaacttgtttgtgggctctgtcatgtgccttgctgcttcatgcttcctctgatgggttcctgagagtcaacctcaacaagaagagattggacaaggaagatctcactgccgccaagttggcgcagcagggcaaccgtcttctgaagaccggcagttcagacagtgatcctgtccctctggtggactacctcaacacccagtactatggggtgattggcctcggctcaccgccgcagaacttcacggtgatatttgacactggaagctccaacctgtgggttccttcagcaaaatgctatttttcgatagcatgctacctccacagcagatacaactcgaaaaagtcgagctcttacaaagcagatggagaaacttgcaaaattacatacggttctggggcaatttctggattct...
position 197
Synonym: OJ1127_B08.13; RAP
NM_001420155.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
Oryza sativa Japonica Group aspartic proteinase-like (LOC4337744), transcript variant 1, mRNA. (1980 bp)
gttactctgatgaagtctcaagagaagaaagagaagaggttgctgtatttatcgtctttgtcctcatctttctttcttgctttcctctaccttgactttggcttccccactctctcttcttcttgggaggctgggagctaccagcacaacacaccaaggaagctgaggtgcgttgatttcttgatatcatggccaagaggcacctcttgttggtgacaacttgtttgtgggctctgtcatgtgccttgctgcttcatgcttcctctgatgggttcctgagagtcaacctcaacaagaagagattggacaaggaagatctcactgccgccaagttggcgcagcagggcaaccgtcttctgaagaccggcagttcagacagtgatcctgtccctctggtggactacctcaacacccagtactatggggtgattggcctcggctcaccgccgcagaacttcacggtgatatttgacactggaagctccaacctgtgggttccttcagcaaaatgctatttttcgatagcatgctacctccacagcagatacaactcgaaaaagtcgagctcttacaaagcagatggagaaacttgcaaaatta...
position 293
Synonym: OJ1127_B08.13; RAP
NM_001420154.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group uncharacterized protein (LOC9266982), mRNA. (1887 bp)
caatgtgcaggagataaaaataagtccaggaatcatgctcttgatatatgaaagaacaccatgtcatgttcctttgaagatattgtcaattgaagatggaagaccactaaaatccttcacgcatttgttgcaccgtaataagaaaattgattttatcgagcaattcaatgaaaagctccttgtcaagcaagaagatgagaaccttcagatacttgatgtacggagttctgagctaattgaagtcagtgttaccaagtttatgactccatcagcattcatttttctgtacgagaacaatctcttcttgacattccgaaacaggacggttgctgtatggaattttcgaggagagctcgtgacctcatttgaagaccatttgctttggcatcaagattgtagcaccaacaatatctacattaccagtgatcaggatctgattatctcatactgcaaatctgaggcaggggttgatgatggtacagtacctccaattgggtctatcaacatgagtgacattatgactggcaaatgcatcgccaagattgctgctaatgatcccaccctccgtattggccctcgcaagaatggtaactctgagag...
position 1165
XM_015765258.3 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group receptor-like protein 7 (LOC107275840), mRNA. (3060 bp)
gcaatagatttacgagtgtgggatatgaccctcttcttcccttacaagtagatttgcttgatcttagcaataacatgcttgaagggtccattccgattcctcgaggctcttcaacatctctcaaatattcaaacaatgggttctcatccatgccatctaattttagtgctcatcttagagatgttacctttttcatggccgacggaaatgaaatctctggaaatattcctttggagttttgcagtgctaagagtttacaactccttgatctgtcttacaacaacttcaatggatcaatctcttcttgtttaatggacagtgttagcacgctgcaagtattaaatctgaaaggaaatgaacttcatggggtgttgccagacgatatcaaagaaggctgttcatttcaggcattagatattagcggaaatttgatagaggggaaactaccaagatcattagttgcttgcaaaaacttggaggtatttgatgttgggttcaatcaaattagtgacacctttccatgttggatgagtactcttccgagacttcaagtcattgccctcagatctaacaagttcttcggacaggtcgcacaatctg...
position 1997
XM_066305356.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group protein NETWORKED 2A (LOC4327456), mRNA. (3041 bp)
gcagacctatacttcaagagcaggcccgatcttataaaccatgtagaggagacatatagatcttaccaggcgcttgctgatagatatgaccgggtatcaggggagcttcacaagtccaaccacaccatagcaactgcatttccggagcaagtccagctctctctgcaagatgacaatggtgatggtttcccaaaaggtatcacagggattaatatcaacagaggaaccagcgcagctccaaagaggacgcaaacacataaaaagatcagctctaagatgagtaaagacaaggcacaagaagagattgagaggctacagaagaaaatccttgtcttgcagactgaaaaggaattcttcaagagctcatatgaatcttcgctgaacaagtatttgagcattgaaagacaggcggcagagatgcaagaggaggtatggagcttgcaggagacttttagcaccagcgcagttattgaagacaatgaagctcgagctttaatggctgcacaagcccttatttcttgcgaggataaattggctagcttgcattgtgagcaaaagagatcatatgaagagacaaccatggagattcaaagagtcata...
position 802
XM_015768253.3 - Oryza sativa Japonica Group (Japanese rice) - NCBI
Oryza sativa Japonica Group kinesin-like protein KIN-7K, chloroplastic (LOC4349100), mRNA; nuclear gene for chloroplast product. (3715 bp)
ggaatacagaaatccagaatttgaacctcttcttgttcgtctcaaggctaaaattcaagagatgaaggagaaggaaactgattccttgggtgacaaagatggaaattcccatgtctgcaaagtatgttttgaatctgccactgctgcagttttgcttccttgtcggcatttttgcttgtgcaagccttgctcgcttgcctgttcagaatgccctctatgccgtacaagaatcgcagacaggataattaccttcacctaaagtgcatgttatcttaaaaggtaacttgaagcacccaatctcttcttgtaaaatcatcagtggtatatgattcttttttcccctagcaaagaaggtgcctttttatgttccttctgtgtttgtatcccaattctttttttttttggtttgctctatagctttcccagttcaacctgttctttgttgtacgagaagttacaagatataacttctctgcaaatatgtatagatatgcgactcgacagtataatacatttgcttttttttttctcctttggcttttgggaagtaaagcaaccaaagaacatgagatccaagagacagagactggtacactttgc...
position 3395
Synonym: KIN7K; OsJ_32142
NM_001423083.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At1g03100, mitochondrial (LOC9269715), transcript variant X2, mRNA. (3726 bp)
agctgcacttctgaaagacgctcaacaagcaggtattcagcttgatccaagctgctatgaggatttgatacaatccagagcacatcacaataataccacaggtgctctcaatctttttaaagagttgaagagtttgaatattttgaaagctggtcagaatgaatttgagatgttagtacaaggctgcaataacaatggagctgctttgacaactaagctagtggaggaagtcagaagtggccacccggttaatcatgctattcatgactggaataatgttatccatttcttctgcaagaagagattgatgcatgatgctcacaaagcacttggcaagatgaaagctttaggacacacgccaaatgcacagacattccattctttagtaactggttatgctgctgttggtggtaaatatgtagaggtgacagatttgtggggtgaaatgaaagttttggccacctcaagttcaatgaattttgatcaagagctcctggactctctgctgtattgctttgtgagaggcggtttcttccttcgagccatggaagttatagaaatgatggaaaaaggcaagatgtttatagacaaatacaagta...
position 2295
XM_015759312.3 - Oryza sativa Japonica Group (Japanese rice) - NCBI
Oryza sativa Japonica Group cadmium/zinc-transporting ATPase HMA2-like (LOC4341965), mRNA. (3861 bp)
of International Science Genome Sequencing & Analysis Group; RIKEN TITLE Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice JOURNAL Science 301 (5631), 376-379 (2003) PUBMED 12869764 REMARK Erratum:[Science. 2003 Sep;301(5641):1849] ctatccccgattcgcacagccaatctcttcttgcttcctcctcctcctcctccagccgccgccgccgacgacgattcttggtagagagattcttgcgttgttttacctgcgtcttgttcttcttgggagttgggtggatcgattgatcgaggttttggaggttggaagaagtgtgtgttgtggtggggggtttgtagagagagagagggcaaaggcacgcaaagagggagagagtgaggagagatggcggcggagggagggaggtgtcagaagagctacttcgacgtgctggggatttgctgcccgtcggaggttcccctcgtcgagaagcttctg...
position 21
Synonym: HMA2; OsHMA2; OsJ_22530
NM_001402933.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At1g03100, mitochondrial (LOC9269715), transcript variant X1, mRNA. (3813 bp)
agctgcacttctgaaagacgctcaacaagcaggtattcagcttgatccaagctgctatgaggatttgatacaatccagagcacatcacaataataccacaggtgctctcaatctttttaaagagttgaagagtttgaatattttgaaagctggtcagaatgaatttgagatgttagtacaaggctgcaataacaatggagctgctttgacaactaagctagtggaggaagtcagaagtggccacccggttaatcatgctattcatgactggaataatgttatccatttcttctgcaagaagagattgatgcatgatgctcacaaagcacttggcaagatgaaagctttaggacacacgccaaatgcacagacattccattctttagtaactggttatgctgctgttggtggtaaatatgtagaggtgacagatttgtggggtgaaatgaaagttttggccacctcaagttcaatgaattttgatcaagagctcctggactctctgctgtattgctttgtgagaggcggtttcttccttcgagccatggaagttatagaaatgatggaaaaaggcaagatgtttatagacaaatacaagta...
position 2295
XM_015759311.3 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group soluble starch synthase 3a, chloroplastic/amyloplastic-like (LOC9268758), mRNA. (5916 bp)
aaaaccatggcagggttagactatgtttaacttatgacgagcctctctcacacctgatatatgctggctctgacttcatccttgttccatccatctttgaaccttgcggtttgactcaacttgttgccatgcgctatggatccatccctattgttcggaaaaccggaggactttacgacactgttttcgacgtagaccatgacaaagaccgggctcgagttctaggccttgaaccaaatgggttcagctttgatggagctgactgtaatggtgtggattacgccctgaacagagcaatctcttcttggtttgaagcccgcggttggttccactccctctgcaaaagggtcatggagcaagactggtcctggaaccggcctgccctggactacattgaactgtaccattcagctcacaaattttgaggcccccatccaacggtggcaagagaaagcaagcattggcagatactacaaattaaatgaaacatggctcaaagttaaaatattttatctgagctgcagatacaaattaactcaaacatggttcaaagttaagatcttttatctgagctacacatatatatgcagaataaagact...
position 5439
XM_015795182.3 - Oryza sativa Japonica Group (Japanese rice) - NCBI

Data Export:

Maximum 10000 results can be retrieved as Tab-delimited text or JSON format.

Debug Info:

Redirect URI : https://ggrna.dbcls.jp/os/both%3acaagaagagattg
lang : en | div : | spe : os | query_string : both:caagaagagattg | format : html | download : 

0.000 | 0.000 | search_start;
0.083 | 0.083 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=((nt:caagaagagattg)%7C(nt:caatctcttcttg))?source=Oryza sativa Japonica Group (Japanese rice)?to=0&format=json
0.114 | 0.031 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=((nt:caagaagagattg)%7C(nt:caatctcttcttg))?source=Oryza sativa Japonica Group (Japanese rice)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.116 | 0.002 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]