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2024-04-25 18:05:05, GGRNA : RefSeq release 222 (Jan, 2024)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

Oryza sativa Japonica Group 26S proteasome non-ATPase regulatory subunit 6-like (LOC4336206), mRNA. (1584 bp)
Science Genome Sequencing & Analysis Group; RIKEN TITLE Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice JOURNAL Science 301 (5631), 376-379 (2003) PUBMED 12869764 REMARK Erratum:[Science. 2003 Sep;301(5641):1849] ggaggacgaaactagccttctctccttctctctcgtgttctctcccaatctcttcttgcggcggaagcaaagcgagaagcgaggcgactcttctccggcggcggcggcggcggaagcggcggcgagatggacggcggcgtaggcgaggaagggaagcagcagccgcacctggtgctggcgcacaagctgttcctgctctcgcacccggacgtggacgacctcgccaaggtcgacctccgcgccgatgtcctcgccgcagtcaaatccgatgatatggcgtctctgtacgagtcgctgggggccggcggcgtgctggagacggacgctgcgctgctcgcggagatgcgcggcag...
position 46
Synonym: OJ000223_09.5; OsJ_15241; OsRPN7; RPN7
NM_001402380.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group B-cell receptor-associated protein 31 (LOC4329170), mRNA. (1252 bp)
gcctccacgctctacagcatggccgagatcagcggccgcgccgggggagaccccgaatccggcggcggcggcggcggcgcctccctctcgcccaccgaccaggtcctcttctcgcggcacctcctcgaggcatccctcatggggtattccttatttcttgctctagttattgaccggctccaccaatacatcagagagctacgtgggctaaagaagaatgttgaggccgtaactaagcataataaaatgttggaggaagcaaaacatggaagatctgaggagacaaagaaataccaagaagagattggtgctctcaatgaggatatgaagaaactgaagctacaagtccaagaaaagacagaggaagtccacgttgctgaggacaaggctcttgctattcggaaacaatctgaaagcctgctgcttgagtatgaccgtttgctggaggacaaccagcatctccgggagcagctgcagtcaattgaccacaggctctccagtccaaaataagttcaagtgtaatatttttttttcctatgggattggagaacctagtcaatatattgctgcagaaaattttccatcacagttttggaaaaa...
position 708
XM_015767827.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4346684 (LOC4346684), mRNA. (1328 bp)
gcctcctcgccgccgtcgcgacctcccccaagtgagacgtcacggcacggcaccgcacggtgggcaggtgtgaatacggtttattagtcttccaggtgggccccacctgtcagtgggggaaataagggtgatggccatttgggagggttggtgtggtgtggtggtgatggggagattgattgatttagctggtgggatttgcaatatttaggaagaaaattaatcaaagtgatttaaaaaatttggaggatgtagggggcaatgatttagctgttgcactgcatcagaaattcgcaagaagagattggagatttttcacatcggttgatggtgatcacacattggggatgatgatgatgatgatgatctattcatgtatgtacaattaattactagcttttgtaccaccattaattctttgattcatgttgtggtgatcaacaacaacagagatgagaatgataaaatgggaaaagcatcattaccactctttttctagtctttccagtccattttgtcatatgccccctacacattcttcgattttaacttaa
position 1069
XM_015795982.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI
Oryza sativa Japonica Group aspartic proteinase-like (LOC4337744), transcript variant 2, mRNA. (1884 bp)
PUBMED 12869764 REMARK Erratum:[Science. 2003 Sep;301(5641):1849] ggcttccccactctctcttcttcttgggaggctgggagctaccagcacaacacaccaaggaagctgagcaggtgcgttgatttcttgatatcatggccaagaggcacctcttgttggtgacaacttgtttgtgggctctgtcatgtgccttgctgcttcatgcttcctctgatgggttcctgagagtcaacctcaacaagaagagattggacaaggaagatctcactgccgccaagttggcgcagcagggcaaccgtcttctgaagaccggcagttcagacagtgatcctgtccctctggtggactacctcaacacccagtactatggggtgattggcctcggctcaccgccgcagaacttcacggtgatatttgacactggaagctccaacctgtgggttccttcagcaaaatgctatttttcgatagcatgctacctccacagcagatacaactcgaaaaagtcgagctcttacaaagcagatggagaaacttgcaaaattacatacggttctggggcaatttctggattct...
position 197
Synonym: OJ1127_B08.13; RAP
NM_001420155.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
Oryza sativa Japonica Group aspartic proteinase-like (LOC4337744), transcript variant 1, mRNA. (1980 bp)
gttactctgatgaagtctcaagagaagaaagagaagaggttgctgtatttatcgtctttgtcctcatctttctttcttgctttcctctaccttgactttggcttccccactctctcttcttcttgggaggctgggagctaccagcacaacacaccaaggaagctgaggtgcgttgatttcttgatatcatggccaagaggcacctcttgttggtgacaacttgtttgtgggctctgtcatgtgccttgctgcttcatgcttcctctgatgggttcctgagagtcaacctcaacaagaagagattggacaaggaagatctcactgccgccaagttggcgcagcagggcaaccgtcttctgaagaccggcagttcagacagtgatcctgtccctctggtggactacctcaacacccagtactatggggtgattggcctcggctcaccgccgcagaacttcacggtgatatttgacactggaagctccaacctgtgggttccttcagcaaaatgctatttttcgatagcatgctacctccacagcagatacaactcgaaaaagtcgagctcttacaaagcagatggagaaacttgcaaaatta...
position 293
Synonym: OJ1127_B08.13; RAP
NM_001420154.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278998 (LOC107278998), transcript variant X7, ncRNA. (1502 bp)
with support for all annotated introns" /db_xref="GeneID:107278998" ncRNA 1..1502 /ncRNA_class="lncRNA" /gene="LOC107278998" /product="uncharacterized LOC107278998, transcript variant X7" /db_xref="GeneID:107278998" ORIGIN // ccgccgcttacaggtgggtcccactccgcactgcaatcccttcccttccgcttcctctctcaatctcttcttgcctcgtctcttcccccaaatcgggcgaatcccaaatcaaccaaaccctagcccgcggcggccaccgcgatggccacctccacgcggctgcggcggcgacggccgcctccgccccttgcatgcctcccccaccgaggagcggtgtgccagtgccagaggcggcggcggcggcgaccggatcatggcgcttctcctgtcggtggacggccgcataaggtgtgggggtgacatcgcgtcggtcgagctcgacggcgtgcggtgacctcctcggcggcgcgttctccctcctccctctcctcgag...
position 61
XR_003238988.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278998 (LOC107278998), transcript variant X8, ncRNA. (1562 bp)
with support for all annotated introns" /db_xref="GeneID:107278998" ncRNA 1..1562 /ncRNA_class="lncRNA" /gene="LOC107278998" /product="uncharacterized LOC107278998, transcript variant X8" /db_xref="GeneID:107278998" ORIGIN // ccgccgcttacaggtgggtcccactccgcactgcaatcccttcccttccgcttcctctctcaatctcttcttgcctcgtctcttcccccaaatcgggcgaatcccaaatcaaccaaaccctagcccgcggcggccaccgcgatggccacctccacgcggctgcggcggcgacggccgcctccgccccttgcatgcctcccccaccgaggagcggtgtgccagtgccagaggcggcggcggcggcgaccggatcatggcgcttctcctgtcggtggacggccgcataaggtgtgggggtgacatcgcgtcggtcgagctcgacggcgtgcggtgacctcctcggcggcgcgttctccctcctccctctcctcgag...
position 61
XR_003238989.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278998 (LOC107278998), transcript variant X1, ncRNA. (1616 bp)
with support for all annotated introns" /db_xref="GeneID:107278998" ncRNA 1..1616 /ncRNA_class="lncRNA" /gene="LOC107278998" /product="uncharacterized LOC107278998, transcript variant X1" /db_xref="GeneID:107278998" ORIGIN // ccgccgcttacaggtgggtcccactccgcactgcaatcccttcccttccgcttcctctctcaatctcttcttgcctcgtctcttcccccaaatcgggcgaatcccaaatcaaccaaaccctagcccgcggcggccaccgcgatggccacctccacgcggctgcggcggcgacggccgcctccgccccttgcatgcctcccccaccgaggagcggtgtgccagtgccagaggcggcggcggcggcgaccggatcatggcgcttctcctgtcggtggacggccgcataaggtgtgggggtgacatcgcgtcggtcgagctcgacggcgtgcggtgacctcctcggcggcgcgttctccctcctccctctcctcgag...
position 61
XR_001540355.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278998 (LOC107278998), transcript variant X5, ncRNA. (1621 bp)
with support for all annotated introns" /db_xref="GeneID:107278998" ncRNA 1..1621 /ncRNA_class="lncRNA" /gene="LOC107278998" /product="uncharacterized LOC107278998, transcript variant X5" /db_xref="GeneID:107278998" ORIGIN // tccgccgcttacaggtgggtcccactccgcactgcaatcccttcccttccgcttcctctctcaatctcttcttgcctcgtctcttcccccaaatcgggcgaatcccaaatcaaccaaaccctagcccgcggcggccaccgcgatggccacctccacgcggctgcggcggcgacggccgcctccgccccttgcatgcctcccccaccgaggagcggtgtgccagtgccagaggcggcggcggcggcgaccggatcatggcgcttctcctgtcggtggacggccgcataaggtgtgggggtgacatcgcgtcggtcgagctcgacggcgtgcggtgacctcctcggcggcgcgttctccctcctccctctcctcga...
position 62
XR_003238986.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278998 (LOC107278998), transcript variant X3, ncRNA. (1693 bp)
with support for all annotated introns" /db_xref="GeneID:107278998" ncRNA 1..1693 /ncRNA_class="lncRNA" /gene="LOC107278998" /product="uncharacterized LOC107278998, transcript variant X3" /db_xref="GeneID:107278998" ORIGIN // tccgccgcttacaggtgggtcccactccgcactgcaatcccttcccttccgcttcctctctcaatctcttcttgcctcgtctcttcccccaaatcgggcgaatcccaaatcaaccaaaccctagcccgcggcggccaccgcgatggccacctccacgcggctgcggcggcgacggccgcctccgccccttgcatgcctcccccaccgaggagcggtgtgccagtgccagaggcggcggcggcggcgaccggatcatggcgcttctcctgtcggtggacggccgcataaggtgtgggggtgacatcgcgtcggtcgagctcgacggcgtgcggtgacctcctcggcggcgcgttctccctcctccctctcctcga...
position 62
XR_003238985.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278998 (LOC107278998), transcript variant X6, ncRNA. (1737 bp)
with support for all annotated introns" /db_xref="GeneID:107278998" ncRNA 1..1737 /ncRNA_class="lncRNA" /gene="LOC107278998" /product="uncharacterized LOC107278998, transcript variant X6" /db_xref="GeneID:107278998" ORIGIN // ttccgccgcttacaggtgggtcccactccgcactgcaatcccttcccttccgcttcctctctcaatctcttcttgcctcgtctcttcccccaaatcgggcgaatcccaaatcaaccaaaccctagcccgcggcggccaccgcgatggccacctccacgcggctgcggcggcgacggccgcctccgccccttgcatgcctcccccaccgaggagcggtgtgccagtgccagaggcggcggcggcggcgaccggatcatggcgcttctcctgtcggtggacggccgcataaggtgtgggggtgacatcgcgtcggtcgagctcgacggcgtgcggtgacctcctcggcggcgcgttctccctcctccctctcctcg...
position 63
XR_003238987.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266982 (LOC9266982), mRNA. (1924 bp)
caatgtgcaggagataaaaataagtccaggaatcatgctcttgatatatgaaagaacaccatgtcatgttcctttgaagatattgtcaattgaagatggaagaccactaaaatccttcacgcatttgttgcaccgtaataagaaaattgattttatcgagcaattcaatgaaaagctccttgtcaagcaagaagatgagaaccttcagatacttgatgtacggagttctgagctaattgaagtcagtgttaccaagtttatgactccatcagcattcatttttctgtacgagaacaatctcttcttgacattccgaaacaggacggttgctgtatggaattttcgaggagagctcgtgacctcatttgaagaccatttgctttggcatcaagattgtagcaccaacaatatctacattaccagtgatcaggatctgattatctcatactgcaaatctgaggcaggggttgatgatggtacagtacctccaattgggtctatcaacatgagtgacattatgactggcaaatgcatcgccaagattgctgctaatgatcccaccctccgtattggccctcgcaagaatggtaactctgagag...
position 1198
XM_015765258.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278998 (LOC107278998), transcript variant X2, ncRNA. (1989 bp)
with support for all annotated introns" /db_xref="GeneID:107278998" ncRNA 1..1989 /ncRNA_class="lncRNA" /gene="LOC107278998" /product="uncharacterized LOC107278998, transcript variant X2" /db_xref="GeneID:107278998" ORIGIN // tccgccgcttacaggtgggtcccactccgcactgcaatcccttcccttccgcttcctctctcaatctcttcttgcctcgtctcttcccccaaatcgggcgaatcccaaatcaaccaaaccctagcccgcggcggccaccgcgatggccacctccacgcggctgcggcggcgacggccgcctccgccccttgcatgcctcccccaccgaggagcggtgtgccagtgccagaggcggcggcggcggcgaccggatcatggcgcttctcctgtcggtggacggccgcataaggtgtgggggtgacatcgcgtcggtcgagctcgacggcgtgcggtgacctcctcggcggcgcgttctccctcctccctctcctcga...
position 62
XR_003238984.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group aspartic proteinase-like (LOC4337744), mRNA. (2009 bp)
ttccccactctctcttcttcttgggaggctgggagctaccagcacaacacaccaaggaagctgaggtgagaacgattgattactttgctggctgctcttagctactactacaactgttttgtcttaatcggttgattacatctcatatttcatcggtttagctcgctctgtgcgttgatttcttgatatcatggccaagaggcacctcttgttggtgacaacttgtttgtgggctctgtcatgtgccttgctgcttcatgcttcctctgatgggttcctgagagtcaacctcaacaagaagagattggacaaggaagatctcactgccgccaagttggcgcagcagggcaaccgtcttctgaagaccggcagttcagacagtgatcctgtccctctggtggactacctcaacacccagtactatggggtgattggcctcggctcaccgccgcagaacttcacggtgatatttgacactggaagctccaacctgtgggttccttcagcaaaatgctatttttcgatagcatgctacctccacagcagatacaactcgaaaaagtcgagctcttacaaagcagatggagaaacttgcaaaat...
position 362
XM_026025509.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group protein NETWORKED 2A (LOC4327456), transcript variant X5, mRNA. (2828 bp)
gcagacctatacttcaagagcaggcccgatcttataaaccatgtagaggagacatatagatcttaccaggcgcttgctgatagatatgaccgggtatcaggggagcttcacaagtccaaccacaccatagcaactgcatttccggagcaagtccagctctctctgcaagatgacaatggtgatggtttcccaaaaggtatcacagggattaatatcaacagaggaaccagcgcagctccaaagaggacgcaaacacataaaaagatcagctctaagatgagtaaagacaaggcacaagaagagattgagaggctacagaagaaaatccttgtcttgcagactgaaaaggaattcttcaagagctcatatgaatcttcgctgaacaagtatttgagcattgaaagacaggcggcagagatgcaagaggaggtatggagcttgcaggagacttttagcaccagcgcagttattgaagacaatgaagctcgagctttaatggctgcacaagcccttatttcttgcgaggataaattggctagcttgcattgtgagcaaaagagatcatatgaagagacaaccatggagattcaaagagtcata...
position 474
XM_015768273.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI
Oryza sativa Japonica Group kinesin-like protein KIN-7K, chloroplastic (LOC4349100), mRNA; nuclear gene for chloroplast product. (3715 bp)
ggaatacagaaatccagaatttgaacctcttcttgttcgtctcaaggctaaaattcaagagatgaaggagaaggaaactgattccttgggtgacaaagatggaaattcccatgtctgcaaagtatgttttgaatctgccactgctgcagttttgcttccttgtcggcatttttgcttgtgcaagccttgctcgcttgcctgttcagaatgccctctatgccgtacaagaatcgcagacaggataattaccttcacctaaagtgcatgttatcttaaaaggtaacttgaagcacccaatctcttcttgtaaaatcatcagtggtatatgattcttttttcccctagcaaagaaggtgcctttttatgttccttctgtgtttgtatcccaattctttttttttttggtttgctctatagctttcccagttcaacctgttctttgttgtacgagaagttacaagatataacttctctgcaaatatgtatagatatgcgactcgacagtataatacatttgcttttttttttctcctttggcttttgggaagtaaagcaaccaaagaacatgagatccaagagacagagactggtacactttgc...
position 3395
Synonym: KIN7K; OsJ_32142
NM_001423083.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group protein NETWORKED 2A (LOC4327456), transcript variant X4, mRNA. (2981 bp)
gcagacctatacttcaagagcaggcccgatcttataaaccatgtagaggagacatatagatcttaccaggcgcttgctgatagatatgaccgggtatcaggggagcttcacaagtccaaccacaccatagcaactgcatttccggagcaagtccagctctctctgcaagatgacaatggtgatggtttcccaaaaggtatcacagggattaatatcaacagaggaaccagcgcagctccaaagaggacgcaaacacataaaaagatcagctctaagatgagtaaagacaaggcacaagaagagattgagaggctacagaagaaaatccttgtcttgcagactgaaaaggaattcttcaagagctcatatgaatcttcgctgaacaagtatttgagcattgaaagacaggcggcagagatgcaagaggaggtatggagcttgcaggagacttttagcaccagcgcagttattgaagacaatgaagctcgagctttaatggctgcacaagcccttatttcttgcgaggataaattggctagcttgcattgtgagcaaaagagatcatatgaagagacaaccatggagattcaaagagtcata...
position 745
XM_015768261.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI
Oryza sativa Japonica Group cadmium/zinc-transporting ATPase HMA2-like (LOC4341965), mRNA. (3861 bp)
of International Science Genome Sequencing & Analysis Group; RIKEN TITLE Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice JOURNAL Science 301 (5631), 376-379 (2003) PUBMED 12869764 REMARK Erratum:[Science. 2003 Sep;301(5641):1849] ctatccccgattcgcacagccaatctcttcttgcttcctcctcctcctcctccagccgccgccgccgacgacgattcttggtagagagattcttgcgttgttttacctgcgtcttgttcttcttgggagttgggtggatcgattgatcgaggttttggaggttggaagaagtgtgtgttgtggtggggggtttgtagagagagagagggcaaaggcacgcaaagagggagagagtgaggagagatggcggcggagggagggaggtgtcagaagagctacttcgacgtgctggggatttgctgcccgtcggaggttcccctcgtcgagaagcttctg...
position 21
Synonym: HMA2; OsHMA2; OsJ_22530
NM_001402933.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group protein NETWORKED 2A (LOC4327456), transcript variant X1, mRNA. (3146 bp)
gcagacctatacttcaagagcaggcccgatcttataaaccatgtagaggagacatatagatcttaccaggcgcttgctgatagatatgaccgggtatcaggggagcttcacaagtccaaccacaccatagcaactgcatttccggagcaagtccagctctctctgcaagatgacaatggtgatggtttcccaaaaggtatcacagggattaatatcaacagaggaaccagcgcagctccaaagaggacgcaaacacataaaaagatcagctctaagatgagtaaagacaaggcacaagaagagattgagaggctacagaagaaaatccttgtcttgcagactgaaaaggaattcttcaagagctcatatgaatcttcgctgaacaagtatttgagcattgaaagacaggcggcagagatgcaagaggaggtatggagcttgcaggagacttttagcaccagcgcagttattgaagacaatgaagctcgagctttaatggctgcacaagcccttatttcttgcgaggataaattggctagcttgcattgtgagcaaaagagatcatatgaagagacaaccatggagattcaaagagtcata...
position 792
XM_015768253.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group protein NETWORKED 2A (LOC4327456), transcript variant X3, misc_RNA. (3765 bp)
gcagacctatacttcaagagcaggcccgatcttataaaccatgtagaggagacatatagatcttaccaggcgcttgctgatagatatgaccgggtatcaggggagcttcacaagtccaaccacaccatagcaactgcatttccggagcaagtccagctctctctgcaagatgacaatggtgatggtttcccaaaaggtatcacagggattaatatcaacagaggaaccagcgcagctccaaagaggacgcaaacacataaaaagatcagctctaagatgagtaaagacaaggcacaagaagagattgagaggctacagaagaaaatccttgtcttgcagactgaaaaggaattcttcaagagctcatatgaatcttcgctgaacaagtatttgagcattgaaagacaggcggcagagatgcaagaggaggtatggagcttgcaggagacttttagcaccagcgcagttattgaagacaatgaagctcgagctttaatggctgcacaagcccttatttcttgcgaggataaattggctagcttgcattgtgagcaaaagagatcatatgaagagacaaccatggagattcaaagagtcata...
position 745
XR_001542944.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At1g03100, mitochondrial (LOC9269715), transcript variant X6, mRNA. (3912 bp)
agctgcacttctgaaagacgctcaacaagcaggtattcagcttgatccaagctgctatgaggatttgatacaatccagagcacatcacaataataccacaggtgctctcaatctttttaaagagttgaagagtttgaatattttgaaagctggtcagaatgaatttgagatgttagtacaaggctgcaataacaatggagctgctttgacaactaagctagtggaggaagtcagaagtggccacccggttaatcatgctattcatgactggaataatgttatccatttcttctgcaagaagagattgatgcatgatgctcacaaagcacttggcaagatgaaagctttaggacacacgccaaatgcacagacattccattctttagtaactggttatgctgctgttggtggtaaatatgtagaggtgacagatttgtggggtgaaatgaaagttttggccacctcaagttcaatgaattttgatcaagagctcctggactctctgctgtattgctttgtgagaggcggtttcttccttcgagccatggaagttatagaaatgatggaaaaaggcaagatgtttatagacaaatacaagta...
position 2003
XM_026020801.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At1g03100, mitochondrial (LOC9269715), transcript variant X2, mRNA. (4042 bp)
agctgcacttctgaaagacgctcaacaagcaggtattcagcttgatccaagctgctatgaggatttgatacaatccagagcacatcacaataataccacaggtgctctcaatctttttaaagagttgaagagtttgaatattttgaaagctggtcagaatgaatttgagatgttagtacaaggctgcaataacaatggagctgctttgacaactaagctagtggaggaagtcagaagtggccacccggttaatcatgctattcatgactggaataatgttatccatttcttctgcaagaagagattgatgcatgatgctcacaaagcacttggcaagatgaaagctttaggacacacgccaaatgcacagacattccattctttagtaactggttatgctgctgttggtggtaaatatgtagaggtgacagatttgtggggtgaaatgaaagttttggccacctcaagttcaatgaattttgatcaagagctcctggactctctgctgtattgctttgtgagaggcggtttcttccttcgagccatggaagttatagaaatgatggaaaaaggcaagatgtttatagacaaatacaagta...
position 2003
XM_026020798.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At1g03100, mitochondrial (LOC9269715), transcript variant X5, mRNA. (4055 bp)
agctgcacttctgaaagacgctcaacaagcaggtattcagcttgatccaagctgctatgaggatttgatacaatccagagcacatcacaataataccacaggtgctctcaatctttttaaagagttgaagagtttgaatattttgaaagctggtcagaatgaatttgagatgttagtacaaggctgcaataacaatggagctgctttgacaactaagctagtggaggaagtcagaagtggccacccggttaatcatgctattcatgactggaataatgttatccatttcttctgcaagaagagattgatgcatgatgctcacaaagcacttggcaagatgaaagctttaggacacacgccaaatgcacagacattccattctttagtaactggttatgctgctgttggtggtaaatatgtagaggtgacagatttgtggggtgaaatgaaagttttggccacctcaagttcaatgaattttgatcaagagctcctggactctctgctgtattgctttgtgagaggcggtttcttccttcgagccatggaagttatagaaatgatggaaaaaggcaagatgtttatagacaaatacaagta...
position 2003
XM_026020800.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At1g03100, mitochondrial (LOC9269715), transcript variant X3, mRNA. (4100 bp)
agctgcacttctgaaagacgctcaacaagcaggtattcagcttgatccaagctgctatgaggatttgatacaatccagagcacatcacaataataccacaggtgctctcaatctttttaaagagttgaagagtttgaatattttgaaagctggtcagaatgaatttgagatgttagtacaaggctgcaataacaatggagctgctttgacaactaagctagtggaggaagtcagaagtggccacccggttaatcatgctattcatgactggaataatgttatccatttcttctgcaagaagagattgatgcatgatgctcacaaagcacttggcaagatgaaagctttaggacacacgccaaatgcacagacattccattctttagtaactggttatgctgctgttggtggtaaatatgtagaggtgacagatttgtggggtgaaatgaaagttttggccacctcaagttcaatgaattttgatcaagagctcctggactctctgctgtattgctttgtgagaggcggtttcttccttcgagccatggaagttatagaaatgatggaaaaaggcaagatgtttatagacaaatacaagta...
position 2003
XM_015759312.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At1g03100, mitochondrial (LOC9269715), transcript variant X1, mRNA. (4187 bp)
agctgcacttctgaaagacgctcaacaagcaggtattcagcttgatccaagctgctatgaggatttgatacaatccagagcacatcacaataataccacaggtgctctcaatctttttaaagagttgaagagtttgaatattttgaaagctggtcagaatgaatttgagatgttagtacaaggctgcaataacaatggagctgctttgacaactaagctagtggaggaagtcagaagtggccacccggttaatcatgctattcatgactggaataatgttatccatttcttctgcaagaagagattgatgcatgatgctcacaaagcacttggcaagatgaaagctttaggacacacgccaaatgcacagacattccattctttagtaactggttatgctgctgttggtggtaaatatgtagaggtgacagatttgtggggtgaaatgaaagttttggccacctcaagttcaatgaattttgatcaagagctcctggactctctgctgtattgctttgtgagaggcggtttcttccttcgagccatggaagttatagaaatgatggaaaaaggcaagatgtttatagacaaatacaagta...
position 2003
XM_015759311.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At1g03100, mitochondrial (LOC9269715), transcript variant X4, mRNA. (4625 bp)
agctgcacttctgaaagacgctcaacaagcaggtattcagcttgatccaagctgctatgaggatttgatacaatccagagcacatcacaataataccacaggtgctctcaatctttttaaagagttgaagagtttgaatattttgaaagctggtcagaatgaatttgagatgttagtacaaggctgcaataacaatggagctgctttgacaactaagctagtggaggaagtcagaagtggccacccggttaatcatgctattcatgactggaataatgttatccatttcttctgcaagaagagattgatgcatgatgctcacaaagcacttggcaagatgaaagctttaggacacacgccaaatgcacagacattccattctttagtaactggttatgctgctgttggtggtaaatatgtagaggtgacagatttgtggggtgaaatgaaagttttggccacctcaagttcaatgaattttgatcaagagctcctggactctctgctgtattgctttgtgagaggcggtttcttccttcgagccatggaagttatagaaatgatggaaaaaggcaagatgtttatagacaaatacaagta...
position 2003
XM_026020799.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group protein NETWORKED 2A (LOC4327456), transcript variant X2, misc_RNA. (4956 bp)
gcagacctatacttcaagagcaggcccgatcttataaaccatgtagaggagacatatagatcttaccaggcgcttgctgatagatatgaccgggtatcaggggagcttcacaagtccaaccacaccatagcaactgcatttccggagcaagtccagctctctctgcaagatgacaatggtgatggtttcccaaaaggtatcacagggattaatatcaacagaggaaccagcgcagctccaaagaggacgcaaacacataaaaagatcagctctaagatgagtaaagacaaggcacaagaagagattgagaggctacagaagaaaatccttgtcttgcagactgaaaaggaattcttcaagagctcatatgaatcttcgctgaacaagtatttgagcattgaaagacaggcggcagagatgcaagaggaggtatggagcttgcaggagacttttagcaccagcgcagttattgaagacaatgaagctcgagctttaatggctgcacaagcccttatttcttgcgaggataaattggctagcttgcattgtgagcaaaagagatcatatgaagagacaaccatggagattcaaagagtcata...
position 745
XR_003240207.1 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group starch synthase 3, chloroplastic/amyloplastic (LOC9268758), transcript variant X4, mRNA. (6282 bp)
aaaaccatggcagggttagactatgtttaacttatgacgagcctctctcacacctgatatatgctggctctgacttcatccttgttccatccatctttgaaccttgcggtttgactcaacttgttgccatgcgctatggatccatccctattgttcggaaaaccggaggactttacgacactgttttcgacgtagaccatgacaaagaccgggctcgagttctaggccttgaaccaaatgggttcagctttgatggagctgactgtaatggtgtggattacgccctgaacagagcaatctcttcttggtttgaagcccgcggttggttccactccctctgcaaaagggtcatggagcaagactggtcctggaaccggcctgccctggactacattgaactgtaccattcagctcacaaattttgaggcccccatccaacggtggcaagagaaagcaagcattggcagatactacaaattaaatgaaacatggctcaaagttaaaatattttatctgagctgcagatacaaattaactcaaacatggttcaaagttaagatcttttatctgagctacacatatatatgcagaataaagact...
position 5719
XM_015795185.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group starch synthase 3, chloroplastic/amyloplastic (LOC9268758), transcript variant X1, mRNA. (6462 bp)
aaaaccatggcagggttagactatgtttaacttatgacgagcctctctcacacctgatatatgctggctctgacttcatccttgttccatccatctttgaaccttgcggtttgactcaacttgttgccatgcgctatggatccatccctattgttcggaaaaccggaggactttacgacactgttttcgacgtagaccatgacaaagaccgggctcgagttctaggccttgaaccaaatgggttcagctttgatggagctgactgtaatggtgtggattacgccctgaacagagcaatctcttcttggtttgaagcccgcggttggttccactccctctgcaaaagggtcatggagcaagactggtcctggaaccggcctgccctggactacattgaactgtaccattcagctcacaaattttgaggcccccatccaacggtggcaagagaaagcaagcattggcagatactacaaattaaatgaaacatggctcaaagttaaaatattttatctgagctgcagatacaaattaactcaaacatggttcaaagttaagatcttttatctgagctacacatatatatgcagaataaagact...
position 5899
XM_015795182.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group starch synthase 3, chloroplastic/amyloplastic (LOC9268758), transcript variant X3, mRNA. (7797 bp)
aaaaccatggcagggttagactatgtttaacttatgacgagcctctctcacacctgatatatgctggctctgacttcatccttgttccatccatctttgaaccttgcggtttgactcaacttgttgccatgcgctatggatccatccctattgttcggaaaaccggaggactttacgacactgttttcgacgtagaccatgacaaagaccgggctcgagttctaggccttgaaccaaatgggttcagctttgatggagctgactgtaatggtgtggattacgccctgaacagagcaatctcttcttggtttgaagcccgcggttggttccactccctctgcaaaagggtcatggagcaagactggtcctggaaccggcctgccctggactacattgaactgtaccattcagctcacaaattttgaggcccccatccaacggtggcaagagaaagcaagcattggcagatactacaaattaaatgaaacatggctcaaagttaaaatattttatctgagctgcagatacaaattaactcaaacatggttcaaagttaagatcttttatctgagctacacatatatatgcagaataaagact...
position 7234
XM_015795184.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI
PREDICTED: Oryza sativa Japonica Group starch synthase 3, chloroplastic/amyloplastic (LOC9268758), transcript variant X2, mRNA. (7977 bp)
aaaaccatggcagggttagactatgtttaacttatgacgagcctctctcacacctgatatatgctggctctgacttcatccttgttccatccatctttgaaccttgcggtttgactcaacttgttgccatgcgctatggatccatccctattgttcggaaaaccggaggactttacgacactgttttcgacgtagaccatgacaaagaccgggctcgagttctaggccttgaaccaaatgggttcagctttgatggagctgactgtaatggtgtggattacgccctgaacagagcaatctcttcttggtttgaagcccgcggttggttccactccctctgcaaaagggtcatggagcaagactggtcctggaaccggcctgccctggactacattgaactgtaccattcagctcacaaattttgaggcccccatccaacggtggcaagagaaagcaagcattggcagatactacaaattaaatgaaacatggctcaaagttaaaatattttatctgagctgcagatacaaattaactcaaacatggttcaaagttaagatcttttatctgagctacacatatatatgcagaataaagact...
position 7414
XM_015795183.2 - Oryza sativa Japonica Group (Japanese rice) - NCBI

Data Export:

Maximum 10000 results can be retrieved as Tab-delimited text or JSON format.

Debug Info:

Redirect URI : http://ggrna.dbcls.jp/os/both%3acaagaagagattg
lang : en | div : | spe : os | query_string : both:caagaagagattg | format : html | download : 

0.000 | 0.000 | search_start;
0.084 | 0.084 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=((nt:caagaagagattg)%7C(nt:caatctcttcttg))?source=Oryza sativa Japonica Group (Japanese rice)?to=0&format=json
0.139 | 0.055 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=((nt:caagaagagattg)%7C(nt:caatctcttcttg))?source=Oryza sativa Japonica Group (Japanese rice)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.144 | 0.005 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]