LOCUS       XM_066312878            1438 bp    mRNA    linear   PLN 10-JUL-2024
DEFINITION  PREDICTED: Oryza sativa Japonica Group homeobox-leucine zipper
            protein HOX5-like (LOC4345576), transcript variant X1, mRNA.
ACCESSION   XM_066312878
VERSION     XM_066312878.1
DBLINK      BioProject: PRJNA1123306
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_089042) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_034140825.1-RS_2024_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/21/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1438
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="8"
     gene            1..1438
                     /gene="LOC4345576"
                     /gene_synonym="HOX5; OsHox5; OsJ_026223"
                     /note="homeobox-leucine zipper protein HOX5-like; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 mRNAs, 26 ESTs, 54 long SRA reads, 4 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 81 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:4345576"
     misc_feature    1
                     /gene="LOC4345576"
                     /gene_synonym="HOX5; OsHox5; OsJ_026223"
                     /experiment="COORDINATES: cap analysis [ECO:0007248]"
                     /note="transcription start site"
     CDS             493..1134
                     /gene="LOC4345576"
                     /gene_synonym="HOX5; OsHox5; OsJ_026223"
                     /codon_start=1
                     /product="homeobox-leucine zipper protein HOX5 isoform X1"
                     /protein_id="XP_066168975.1"
                     /db_xref="GeneID:4345576"
                     /translation="

MDPGRVVFDSGVARRACPGGAQMLLFGGGGSANSGGFFRGVPAAVLGMDESRSSSSAAGAGAKRPFFTTHEELLEEEYYDEQAPEKKRRLTAEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQLEHDFDRLKAAYDALAADHHALLSDNDRLRAQVKCLLTCNPQRRKKEAFQAGGYFTKLEQMFICPITLFFC"

     misc_feature    748..909
                     /gene="LOC4345576"
                     /gene_synonym="HOX5; OsHox5; OsJ_026223"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
     misc_feature    913..1026
                     /gene="LOC4345576"
                     /gene_synonym="HOX5; OsHox5; OsJ_026223"
                     /note="Homeobox associated leucine zipper; Region: HALZ;
                     pfam02183"
                     /db_xref="CDD:460477"
     polyA_site      1438
                     /gene="LOC4345576"
                     /gene_synonym="HOX5; OsHox5; OsJ_026223"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

agcaacaaaattcagaagtcaaaaaaatcccaaaaacaaaaaataataaaaaaaaagaaagagagagacatttcgcatctgctgccctgcctcctctcccatcacctgcccattttttcacattgaggcccctctgaaaatattatatttacaactaggtccctggccgggccggccggccaccggaaggagcacctcgccggagaaggctttgtctcttctttttcttctcctcctcctcctccatcggcggcggcatggggttctcgctgtaccccatgaagacgtcgacgcgcatgctgtggagcaccagcttcttccgccataaggtcgcctcctccttctaagcccacgccctctcgggcggcggcggcgagccggcggcggagcgcgcggttggtaggtgcgcgtgcgtgcgtgaacgggagagcagcttcgagatcgggttttcttgggttcttggagaagggaggagaagagggggaggagagcatggatcccggccgcgtcgtgttcgactccggcgtggcgcggcgggcgtgccccggcggcgcgcagatgcttctcttcggcggcggcggcagcgccaacagcggcggcttcttccgaggcgtgccggcggcggtgctggggatggatgaatcgcggtcgtcgtcgtcggcggcgggggcgggggcgaagcggccgttcttcacgacgcacgaggagctcctggaggaggagtactacgacgagcaggcgccggagaagaagcggcggctgacggcggagcaggtgcagatgctggagcggagcttcgaggaggagaacaagctggagccggagcggaagacggagctcgcccgccgcctcggcatggccccccggcaggtcgccgtctggttccagaaccgccgcgcccgctggaagaccaagcagctcgagcacgacttcgaccgcctcaaggccgcctacgacgccctcgccgccgaccaccatgccctcctctccgacaacgaccgcctccgcgcgcaggtcaagtgccttttaacttgtaacccacaaagaagaaaaaaagaagcctttcaagctggtgggtatttcaccaagctagaacagatgtttatttgtccaatcactttgtttttttgttaatatcatgttcatgtaaaaaataaggcaaaaatgtatttttgttcaaattactaggcagagcttcgtgagtttagtttagttttttttagggtcttgagtttagttgcaacaatggtgaaagcatcatccttattttttcaattagaagttgcaaaaatggtgaaagcatcatctttatttttttcaattagaagttgttgatctaaattctagagcatgttattttcttagtgaggaagagaagtagagaacatcataatttgaggaatttcttatcttgatataaggagtgaccatgcattca

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