LOCUS       XM_026027222            1037 bp    mRNA    linear   PLN 10-JUL-2024
DEFINITION  PREDICTED: Oryza sativa Japonica Group homeobox-leucine zipper
            protein HDG12 (LOC112939688), mRNA.
ACCESSION   XM_026027222
VERSION     XM_026027222.2
DBLINK      BioProject: PRJNA1123306
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_089041) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jul 10, 2024 this sequence version replaced XM_026027222.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_034140825.1-RS_2024_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/21/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1037
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="7"
     gene            1..1037
                     /gene="LOC112939688"
                     /note="homeobox-leucine zipper protein HDG12; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 12 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:112939688"
     CDS             1..804
                     /gene="LOC112939688"
                     /codon_start=1
                     /product="homeobox-leucine zipper protein HDG12"
                     /protein_id="XP_025883007.2"
                     /db_xref="GeneID:112939688"
                     /translation="

MWVPHVILSLSLLPPLSHPFSISPSFSSCVGSGVRIGGGDGGRGPERQAGWRVGGRWSCGPGGSGGGLSRWTTIVVAPSIVLRSHAQEVNFVRYCRQIEQGLWAITDIFVNLQRDAYFGVPPLRSRRLPSGCLIANMANSYSEVTRVEHMEVEEKNPINVLYRDLVLSGDVFGAHCWLAALQRACDRYASLVALGVPHHITGGMHTLCHAPSPDPELRIGHDGRLEDGPQGGAAPAPVARGPPPGTRSPPPPLEPPRRRLMSRGRER"

     misc_feature    <256..555
                     /gene="LOC112939688"
                     /note="START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC)
                     ligand-binding domain superfamily; Region: SRPBCC;
                     cl14643"
                     /db_xref="CDD:472699"
ORIGIN      

atgtgggtcccacatgtcatcctctctttatcccttcttcctcctctctctcatcccttctctatctctccctctttctcttcgtgcgtggggagcggcgtccggatcggcggcggcgacggagggcgggggccagagcggcaggcaggatggcgggtgggcggtcgctggagttgtggacctggaggcagcggcggtggcttgtcacggtggaccacgattgtggtggcgccgtcgatagtgttgcgcagccatgcacaggaggtgaacttcgtccgctactgccgacagatcgagcaggggctatgggccatcactgacatcttcgtcaacctgcagcgcgacgcctacttcggcgtgccaccgctgcgttcccgccgactcccgtcgggatgcctcatcgctaacatggccaatagctactccgaggtgaccagggtcgaacacatggaggtggaggagaagaacccgatcaacgtgctctaccgtgacctcgtgctgagcggcgatgtattcggggcgcactgctggctcgccgcgctccagcgcgcgtgcgaccgctacgcctccctcgtcgcgctcggcgtcccgcaccacatcaccggaggtatgcacacgctatgccacgcacctagcccagatccagagcttcgaatcggccacgacgggcggctagaggacgggccgcaaggaggagctgctcctgcgcctgtcgcccgaggtccgccgcctggcacccgctcgccgccgcctccactcgagcccccgcgccgccggctcatgtcaagggggagagagagataagggagagaggaggaagaagaagggtagtgagagagaagatgacatgtgggacccacatgtcagtgggtcccacatttttttttgtgtgaatgacaaatgggccccgcatattttttttaattttaatgccacataagcgccacgtcaatgccacgcgggatgaagaccaagtcaactgatgcatccggcccacgtggtgttggccgaggcccaataactaaaggttgtccgga

//