LOCUS       XM_026023926             624 bp    mRNA    linear   PLN 10-JUL-2024
DEFINITION  PREDICTED: Oryza sativa Japonica Group putative homeobox protein
            knotted-1-like 5 (LOC107275599), mRNA.
ACCESSION   XM_026023926
VERSION     XM_026023926.2
DBLINK      BioProject: PRJNA1123306
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_089037) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jul 10, 2024 this sequence version replaced XM_026023926.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_034140825.1-RS_2024_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/21/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..624
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="3"
     gene            1..624
                     /gene="LOC107275599"
                     /note="putative homeobox protein knotted-1-like 5; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 1 Protein, and 64% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:107275599"
     CDS             40..624
                     /gene="LOC107275599"
                     /codon_start=1
                     /product="putative homeobox protein knotted-1-like 5"
                     /protein_id="XP_025879711.2"
                     /db_xref="GeneID:107275599"
                     /translation="

MEQLHLLLASGGGSKASTTITPFCLARDHASTSSPSPAAVAAPAPPPEATSGSEQSIHGSGTGLQSSEAMIKAKIMSHPLYPSLLRAFVDCKKVGAPPEVVGRLSSLAVVTDVPQYSGDRCLPAQQPAADPELDQFMETYCYMLTRYGQELARPIQEAEEFFRGIEEQIDSLALGAYTRTICQLIIGFSLFRSE"

     misc_feature    250..363
                     /gene="LOC107275599"
                     /note="KNOX1 domain; Region: KNOX1; pfam03790"
                     /db_xref="CDD:461051"
     misc_feature    415..555
                     /gene="LOC107275599"
                     /note="KNOX2 domain; Region: KNOX2; pfam03791"
                     /db_xref="CDD:427506"
ORIGIN      

tcgattgtcccaagaagataattcacagatcacactcacatggagcaacttcatcttctccttgcaagcggtggcggatccaaggccagcaccacaattactcccttctgcctcgctcgagatcatgcgtccacttcttcgccatcgccggccgccgtggcggcgccggcgccgccgccagaggcgacctcaggctctgagcaatccatccatggcagcggcaccggcctgcaatcatcggaagcaatgatcaaggccaagatcatgtcgcaccctctgtatccgtctctcctgagagccttcgtcgactgcaagaaggtcggagcgccaccggaagttgttggccggctctcctccctcgccgtcgtcaccgacgtcccgcagtactccggcgaccggtgtcttcctgcacaacagccggcggctgaccctgagctcgaccaattcatggaaacctactgttacatgctgacgaggtatgggcaggagctagcgaggccaatccaagaagctgaagagttcttcaggggcatagaggagcagatcgactccttggcactaggtgcatatactcgcactatttgtcaattgatcattggcttttccctgttcagatctgaataa

//