GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-04-20 00:32:52, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_026023911             699 bp    mRNA    linear   PLN 07-AUG-2018
DEFINITION  PREDICTED: Oryza sativa Japonica Group disease resistance protein
            Pik-2-like (LOC107278598), mRNA.
ACCESSION   XM_026023911
VERSION     XM_026023911.1
DBLINK      BioProject: PRJNA122
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_029258.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Oryza sativa Japonica Group
                                           Annotation Release 102
            Annotation Version          :: 102
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.1
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 100% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..699
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /chromosome="3"
     gene            1..699
                     /gene="LOC107278598"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins"
                     /db_xref="GeneID:107278598"
     CDS             1..699
                     /gene="LOC107278598"
                     /codon_start=1
                     /product="disease resistance protein Pik-2-like"
                     /protein_id="XP_025879696.1"
                     /db_xref="GeneID:107278598"
                     /translation="
MESVVVTAAEGAVKTLLGKLGSFLSQEPRLLGGVRGELQYIKDELESMNAFLQNLAATSSHSVQVKIWMKQVREMAYDAEDCIDEFQHHFGGYCGNGIVGFIYRMKHLMYTLKVRHRIVMQVQELKVRARDVSDRQVIGFIQDDLLVGINNRRDRVLTYLRVDSDQELRVISIFGFGGLGKTTLAKAIYDSPQLIPPASDQHVSSDIEDEHLKAIEKLAPSDFPNDLTIIRY"
     misc_feature    25..402
                     /gene="LOC107278598"
                     /note="Coiled-coil domain of the potato virux X resistance
                     protein and similar proteins; Region: RX-CC_like; cd14798"
                     /db_xref="CDD:271353"
     misc_feature    order(223..225,235..237,244..246,316..318,325..327,
                     334..342,346..354,358..363)
                     /gene="LOC107278598"
                     /note="RanGAP2 interaction site [polypeptide binding];
                     other site"
                     /db_xref="CDD:271353"
     misc_feature    436..>567
                     /gene="LOC107278598"
                     /note="Resistant to P. syringae 6; Provisional; Region:
                     PLN03210"
                     /db_xref="CDD:215633"
ORIGIN      
atggaaagtgtcgttgttactgctgctgagggtgctgtgaaaacactgctgggtaaactgggctcttttctttcgcaagagccccgacttcttggtggggtcagaggtgagttgcaatacatcaaggatgaacttgagagcatgaacgcattcctccagaaccttgcagccacaagcagccacagtgtccaagtgaagatctggatgaagcaagtcagagagatggcttatgacgctgaggactgcattgatgagttccaacaccactttggtggctattgtggtaatggtattgtagggtttatatataggatgaagcatcttatgtacactctgaaggtccgccatcgaattgtcatgcaagtgcaagagcttaaggttcgtgctcgagatgttagtgacaggcaagttattggttttatacaggatgatctacttgtgggaatcaacaatcggagggacagggtcctaacatatctaagagtggacagtgatcaagaactaagggtaatatcaatttttggctttggaggattgggcaagactacccttgccaaggcaatatatgatagtccacagcttattccacctgcttctgatcaacatgtcagctcagacattgaggatgaacatctcaaagctattgaaaagcttgctccatcagatttcccgaatgatctaacaatcatcaggtactag
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]