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2024-04-29 14:28:59, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_026023844            2480 bp    mRNA    linear   PLN 07-AUG-2018
DEFINITION  PREDICTED: Oryza sativa Japonica Group protein argonaute MEL1-like
            (LOC112938223), transcript variant X1, mRNA.
ACCESSION   XM_026023844
VERSION     XM_026023844.1
DBLINK      BioProject: PRJNA122
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_029258.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Oryza sativa Japonica Group
                                           Annotation Release 102
            Annotation Version          :: 102
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.1
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2480
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /chromosome="3"
     gene            1..2480
                     /gene="LOC112938223"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 EST, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     2 samples with support for all annotated introns"
                     /db_xref="GeneID:112938223"
     CDS             714..2330
                     /gene="LOC112938223"
                     /codon_start=1
                     /product="uncharacterized protein LOC112938223 isoform X1"
                     /protein_id="XP_025879629.1"
                     /db_xref="GeneID:112938223"
                     /translation="
MFKGEQQNCLSDMLKEVTRVKKLLAITDNVHKLLFEAFDGWLIIQFRSYPAGTVLDSQIGLLGEIDSNINATGLQHTHDLMKKMKFAASATPHPRRVLAVALALMVAFAVGPMVALAKCEQQAHAVASLCGGTGIYARCCFALKRSLDGGDPLCLCSLANNREVAEMGLNSTRILSLYRKCEGNVFPVLPAGGCEEVPALSPSPPPLHGSVMPPPLPPATVEPVISAPMVEPPPPPAMITPLPPSTPVFTLPPPPPVTTAPSTALPAGASAAAPSTGVLRRIYQALIGLLCLVAGFLLVAVFVVVRKYWKPQLNNDVEMGSSNAADQSAIENAKKAAAEAQSSAEAAASAAAGSLATAQAASGAAQAAQAATEEVVTVQANAAEQAVLFVEALGRAAQQISTCTITLGQLLQLVSQIIQAVRAAQGGAASAAAAITGLFARFGEIFGRVGAATAFVEAQAVAAQGAPSDLIDIDCINRPGGDRGVSSFDEGGSNEDEDEANVERSTSRTSNRIRKSNVRYSEDVWVLDPPARGKGRRI"
     misc_feature    1005..1256
                     /gene="LOC112938223"
                     /note="Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT)
                     and Seed Storage (SS) Protein family; a protein family
                     unique to higher plants that includes cereal-type
                     alpha-amylase inhibitors, lipid transfer proteins, seed
                     storage proteins, and similar proteins; Region: AAI_LTSS;
                     cl07890"
                     /db_xref="CDD:447555"
ORIGIN      
tcaccacccctttctccctcccaccggtctagggtttctcgtcgattacttcctttgcatataaacgcccccctcccttccattcgaatcatagccactccacccttcccttccccacccatccggcctcacctccatctcgttccctagcttcctccacatctctgccatggcctacctcggcggcgaccctggccgtggcggtggagccccgccggggatgacgccgtggccggggcctcctcctcagccgggccagccggccgtcgtctacacggcgctgcaccagggcgcgtaccagcccggggtggcgcaggtcgtgtactgggcgccctccccgggggctccttctctgggtggcatccgcgcgcctccggctccgtaccagccggcgcaggtggctgcgccacaggcggccgcgccgttcgccgctgctctggccaaggaggtcgagcagaagctgttcgtgacggagaacgcgctggggccacccgctgcggcggcggcggtctcgaagaaggggcccgcccaccctgggcgaccggggtacggcgcggccgggaagaaggtgatgatccacgagaacaacttcctccacaacgtcgtcgacaacaacctcttccacaacgatgaaatgatcaatggaggaactgaggaaccaaggttctgcggcggcctgattcagatgtgcaatgtggagaatgctctgagggatgttcaaaggagaacaacagaactgcctgtcagatatgctcaaggaagtcacaagagtgaaaaaattgttggctattactgacaatgtacataagttactatttgaagcatttgatggttggcttattattcagtttcgatcttatcctgcaggaactgttctggacagtcagattggccttcttggagaaatagattcgaacataaatgctactggcttgcagcatactcatgacttgatgaaaaagatgaagtttgcagcctcggcaactccgcatccacgccgggttctcgctgtagctctagccctcatggtggcctttgcagttggccccatggtggctctagctaagtgcgagcagcaggcccacgccgtggcttctctgtgcggtgggacaggcatatatgcaagatgctgttttgccttgaagaggtcccttgatggtggagatcctctatgcctctgttcgctcgccaacaacagggaggtggctgagatggggttgaattcaacccgaatcctttctctttatcggaaatgcgagggcaatgtgtttcctgttctacccgctggtggatgtgaagaggtccccgctttgtctccctctccgccgccgctgcatggctctgtgatgccacctccactgccaccggcgacggttgaaccggtcatttcagcaccgatggtcgagccgccgcctccgcctgccatgattacaccattgccaccatccacgccagtgtttacgctgcctccgccaccaccagttactactgcgccgagcacggccctgccagccggtgcaagtgcggcagcgccgagcacgggggtgctgagaagaatctatcaggcgctcattggtcttctatgtcttgtggctggttttctgctggtggcggtgtttgttgtggttcgcaagtattggaagcctcagttgaacaatgacgtggagatgggctcctcaaatgccgcagatcagtcagccattgagaatgccaagaaggcagcggccgaggcccaaagctccgccgaagcagctgcaagtgctgccgctgggtccctggccactgcgcaggctgcttctggagcggcgcaggcagcgcaagcagcaactgaagaggtggtgacggtacaggcaaatgcggctgaacaggcagtgctatttgtggaagcattggggcgagccgcacagcagataagtacttgcaccattacattaggccagcttctacaacttgtgtcacagattattcaggcagtgagagcagcccaaggaggcgcagcttcagccgccgcagcaattacgggcttgttcgcccgctttggggagatctttgggcgtgttggagccgctacagcatttgtggaggctcaggccgtggctgcacagggcgccccgtcagatttgattgatatcgactgcattaataggcctggaggagatagaggcgtatcctcatttgatgaaggagggtccaatgaagatgaagatgaagccaatgtagaaagaagtactagtaggactagtaataggattagaaaaagtaatgtgcgttattctgaagatgtttgggttttagatcctccagctaggggtaagggtagacgtatttgagagaatttttcagtttgaagatttctgactttgagagaatttttcagtttgaggatttttggctttttgagtaccattgagatgttgttcatatatgatctatcagatttgcagaaacaatattgcatacttcatcgttcactatcttta
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]