LOCUS       XM_026023643            6635 bp    mRNA    linear   PLN 07-AUG-2018
DEFINITION  PREDICTED: Oryza sativa Japonica Group endoribonuclease Dicer
            homolog 1 (LOC4331440), mRNA.
ACCESSION   XM_026023643
VERSION     XM_026023643.1
DBLINK      BioProject: PRJNA122
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_029258.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Oryza sativa Japonica Group
                                           Annotation Release 102
            Annotation Version          :: 102
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.1
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6635
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /chromosome="3"
     gene            1..6635
                     /gene="LOC4331440"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 17 ESTs, 5 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 69 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:4331440"
     CDS             527..6304
                     /gene="LOC4331440"
                     /codon_start=1
                     /product="endoribonuclease Dicer homolog 1"
                     /protein_id="XP_025879428.1"
                     /db_xref="GeneID:4331440"
                     /translation="

MAGGGGVGGGAGEHAAAAYWYDACEDGASLLCGIDFAASADFDPGLIPAMDTGADDGFVAEIDRILESINAESSPAPPPPPPPPLPEPVPVAPPELPIQEKQLQVASAPVANNAVAVVGVVQRSKGVVARKEPRRESHGCAANGGGGGEWRDGKRPRLASGGVGGPRQEWRRRPMLPPPPSRGWDDRRGRRDFDRVRKHEHHRREARGFWERDRGGKMVFRSGTWEQESDREAKRARTQDGGSMEKKAEADRMGAAQREKPVAEERARQYQLEVLEQAKSRNTIAFLETGAGKTLIAVLLIKSVCDKMLKENKKMLAVFLVPKVPLVYQQAEVIRDRTGYRVGHYCGEMGQDFWDARKWQREFESKQVLVMTAQILLNILRHSIIKMDAIHLLILDECHHAVKKHPYSLVMSEFYHTTPKEKRPAVFGMTASPVNLKGVTSQEDCAIKIRNLESKLDSVVCTIKDRKELEKHVPMPLEVVVQYDKAATLWSLHEQIKQMESTVEEAALSSSKRTKWQFMGARDAGSRDELRLVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFLTALQNDERANYQVDVKFQESYLKKVVDLLHCQLTEGAAMKSETSDVEMQNTEKHNTNDLEEGELPDSHAVSVGEHVDEVIGAAVADGKVTPRVQALIKILLKYQHTEDFRAIIFVERVVTALVLPKVLAELPSLSFIRCASLIGHNNNQEMRACQMQDTISKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMLERGNISHETFLRNARNSEETLRKEAMERTDLSHLDGTSVLSPVDTSPGSMYQVESTGAVVSLNSAVGLIHFYCSQLPSDRYSILHPEFIMQKYEKPGGSVEYSCKLQLPCNAPFEKLEGPICSSIRLAQQAVCLAACKKLHEMGAFTDTLLPDRGSGEGEKTEQNDEGEPLPGTARHREFYPEGVADILRGEWILSGRDGYQNSQFIKLYMYSVNCVNVGTSKDPFVTQLSNFAIIFGNELDAEVLSTTMDLFVARTMITKASLVFRGRIEITESQLVLLKSFHVRLMSIVLDVDVDPSTTPWDPAKAYLFVPVGAEKCTDPLREIDWTLVNNIVNTDAWNNPLQRARPDVYLGTNERTLGGDRREYGFGKLRHGTAFGQKAHPTYGIRGAIAEFDIVKASGLVPARDRGHFSDYQNQGKLFMADSCWNAKDLAGMVVTAAHSGKRFYVDCICYNMNAENSFPRKEGYLGPLEYSSYADYYKQKYGVELIYRKQPLIRARGVSYCKNLLSPRFEHSDAREGDFSENLDKTYYVYLPPELCLVHPLPGSLVRGAQRLPSIMRRVESMLLAVQLKDIIDYPVPATKILEALTAASCQETLCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQYALNKTLQSYIQADRFAPSRWAAPGVLPVFDEESREYEPSIFDEESTGCELQKESYDDYADNMQEDGEIEGDSSCYRVLSSKTLADVVEALIGVYYVAGGKIAANHLMKWIGIHAELDPEEIPPPKPYDIPESIMRSINFDTLKGVLGIEFQNKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALETQIREFVKDVQEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGYDTSVVWKVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYKASRAGNIATVEVFVDGVQIGVAQNPQKKMAQKLAARNALVVLKEKETATKKEDERDGEKKNGAQMFTRQTLNDICLRRQWPMPQYRCVNEGGPAHAKRFVYSVRVNTSDRGWTDECIGEPMPSVKKAKDSAAVLLLELLNRDFPDKPDGKQP"

     misc_feature    1322..1921
                     /gene="LOC4331440"
                     /note="DEXH-box helicase domain of endoribonuclease Dicer;
                     Region: DEXHc_dicer; cd18034"
                     /db_xref="CDD:350792"
     misc_feature    order(1322..1330,1337..1339,1388..1411,1526..1528,
                     1715..1717,1817..1819)
                     /gene="LOC4331440"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:350792"
     misc_feature    order(1490..1495,1562..1567,1640..1642,1646..1651,
                     1658..1660,1733..1741)
                     /gene="LOC4331440"
                     /note="nucleic acid binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:350792"
     misc_feature    2516..2908
                     /gene="LOC4331440"
                     /note="C-terminal helicase domain of the endoribonuclease
                     Dicer; Region: SF2_C_dicer; cd18802"
                     /db_xref="CDD:350189"
     misc_feature    order(2597..2605,2777..2779,2834..2836,2840..2842)
                     /gene="LOC4331440"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:350189"
     misc_feature    order(2789..2791,2795..2797,2870..2872,2876..2878)
                     /gene="LOC4331440"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:350189"
     misc_feature    3101..3364
                     /gene="LOC4331440"
                     /note="Dicer dimerization domain; Region: Dicer_dimer;
                     pfam03368"
                     /db_xref="CDD:427264"
     misc_feature    4106..4546
                     /gene="LOC4331440"
                     /note="PAZ domain, CAF_like subfamily. CAF (for carpel
                     factory) is a plant homolog of Dicer. CAF has been
                     implicated in flower morphogenesis and in early
                     Arabidopsis development and might function through
                     posttranscriptional regulation of specific mRNA...;
                     Region: PAZ_CAF_like; cd02844"
                     /db_xref="CDD:239210"
     misc_feature    order(4250..4252,4337..4339,4349..4351,4403..4405,
                     4505..4507,4511..4513)
                     /gene="LOC4331440"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239210"
     misc_feature    4661..5206
                     /gene="LOC4331440"
                     /note="Ribonuclease III C terminal domain. This group
                     consists of eukaryotic, bacterial and archeal ribonuclease
                     III (RNAse III) proteins. RNAse III is a double stranded
                     RNA-specific endonuclease. Prokaryotic RNAse III is
                     important in post-transcriptional...; Region: RIBOc;
                     cd00593"
                     /db_xref="CDD:238333"
     misc_feature    order(4709..4714,4721..4726,4733..4735,4742..4747,
                     4754..4759,4763..4771,4799..4801,5132..5134,5159..5161)
                     /gene="LOC4331440"
                     /note="dimerization interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:238333"
     misc_feature    order(4709..4711,4718..4720,4730..4732,5102..5104,
                     5111..5113)
                     /gene="LOC4331440"
                     /note="active site"
                     /db_xref="CDD:238333"
     misc_feature    order(4718..4720,5102..5104,5111..5113)
                     /gene="LOC4331440"
                     /note="metal binding site [ion binding]; metal-binding
                     site"
                     /db_xref="CDD:238333"
     misc_feature    5264..5989
                     /gene="LOC4331440"
                     /note="dsRNA-specific ribonuclease [Transcription];
                     Region: Rnc; COG0571"
                     /db_xref="CDD:223644"
     misc_feature    6059..6268
                     /gene="LOC4331440"
                     /note="double-stranded RNA binding motif of plant
                     Dicer-like proteins; Region: DSRM_DCL_plant; cd19869"
                     /db_xref="CDD:380698"
     misc_feature    order(6059..6064,6071..6076,6089..6094,6122..6136,
                     6140..6142,6209..6220,6227..6232)
                     /gene="LOC4331440"
                     /note="putative RNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:380698"
ORIGIN      

tcctcctcgtccgccatctcaatcgagagagcgagcacacgagagagagagagagggaagcggaggagggagaagagatcagaggaaagaggaagagagagagagagagaagagagagagagtgaagagaaagagtagcgttgatacaccgtcgaatcgaatcgaatcgtgccggacccccaccatcgcctcccctctccccatatcggaatcggaatggggagcatcgcatcccttccctttcctttccctcttgcgtttgcgtgattcgtacggtttatcaccgcctctttctcttccactctccccgtcgcatcgtcgtcaccgccgcgcgcgccgcaacgcccacgcccaccggaagtagtagcagcagcagcagcagtagtagtaccaacattcgttttcccctcctcatctctcgtcttttgtattctgctgcttctgattaatggaggagtgaagtggtcgggtgttggtgtggtgctgtgtgactgcttgcttgcagctgctgttgacggcgggagcgatggcgggaggaggaggagttggaggaggcgctggcgagcacgcggcggcggcgtactggtacgacgcgtgcgaggacggcgcgtcgctgctgtgcggcatcgacttcgccgcgtccgcggacttcgaccccggcctcatacccgcgatggacaccggcgccgacgacggcttcgtcgccgagatcgacaggatactcgagagcatcaacgcggagagctcccctgcgcccccacccccgccgccgccgccgctacctgagcccgtgcctgtggctccgccggagctaccgattcaggaaaagcaattacaggtggcctctgcgcccgtggccaacaatgccgtggcggtggtgggcgttgtgcagagaagtaaaggcgtggtggcgaggaaggagccgaggagggagtcgcatggctgtgctgcaaatggcggcggcggtggggagtggagggacgggaagcgcccgcgcctcgcctccggtggtgtcgggggaccgcgtcaggagtggcggcggaggccgatgctgccaccaccgccctcgcgtgggtgggatgacaggcgtggaaggcgcgatttcgacagggtccgcaagcacgagcaccatcggcgcgaggcccggggtttctgggagcgtgaccgcggcggcaagatggtgttccgctcaggcacctgggagcaggagtctgaccgcgaggcaaagcgtgccaggacgcaagatggaggctccatggagaagaaggcagaggcagataggatgggggctgcgcagcgggagaagcctgtcgcggaggagcgtgcaaggcaataccagctagaggtgcttgagcaagctaagagcaggaacacaatagccttcctggagactggcgcagggaagactctcatcgccgtgcttctcatcaaaagtgtgtgcgataaaatgctcaaggagaacaagaagatgcttgctgtcttcttggttcccaaggtgcctcttgtgtatcagcaagctgaggtgattcgtgacagaaccggctatcgtgttgggcattattgtggagagatgggacaggatttctgggatgctagaaagtggcagcgcgaattcgagtcgaaacaggtactagttatgacagcccaaattttgttaaacatcctcaggcacagtattattaaaatggatgcgatacatcttttgattttagatgagtgccatcatgcagtgaaaaaacatccatattctctagtgatgtcagaattttatcacacgactccgaaggagaagaggccagcagttttcggtatgacggcttctcctgtcaatctaaaaggagtgacgagtcaagaggactgtgccatcaagataagaaatcttgagagcaaactagattcagtagtttgtaccatcaaagatcgtaaagagcttgagaagcatgtccccatgcctttggaagttgttgtccaatatgacaaagcagccactctttggtccttgcatgagcaaatcaaacaaatggaaagcacggttgaagaagctgcactctctagctctaagagaactaaatggcagttcatgggggctagggatgctgggtctagagatgagctgcgtcttgtctatggtgtttcagagcgtacagagagtgatggtgcggctaatttaatccagaagttgagagctataaattatgctttaggtgaacttggacaatggtgtgcatataaggttgcacagtcctttttgactgcattacaaaatgatgaaagggcaaactatcaggttgatgtcaagtttcaagagtcttatttaaaaaaggttgttgatctgttacactgccagttgactgaaggggctgcaatgaaaagtgagaccagtgatgttgaaatgcaaaatactgaaaaacacaacacaaatgaccttgaggagggggagctgcctgacagtcatgctgtttctgtaggtgagcatgtagatgaagttatcggtgctgccgtagcagatggtaaagttactcctagggtgcaggctttgatcaaaatacttctcaaatatcagcatactgaggattttcgtgccataatctttgtggagagagttgtgacagcattagttcttcctaaggtattggcagaacttccatctctaagttttattcgatgtgcaagcttgataggccataacaataatcaagagatgcgcgcgtgccagatgcaggatacaatttcaaaatttcgtgatggccgtgttacacttttagtcgcaacaagcgttgcagaggaagggcttgatattcgacagtgcaatgttgtcattcgatttgaccttgcaaagaccgtcttagcctacatacagtcacgtggtcgtgcaagaaagcctggatctgattatatattaatgcttgaaaggggcaatatatcacatgaaacttttttgaggaatgctcggaatagtgaggagacgttgagaaaggaagctatggaaagaaccgatcttagtcatttggatggtacttctgtgttgagtcctgttgatacatcacctggttcaatgtatcaggttgaatcaacaggtgctgttgtcagcttgaactcagcagttggactcatacatttttactgttcacagttgccaagtgacagatactcaattcttcatccggaattcattatgcaaaagtatgagaagccaggtggttcagtggaatattcttgcaagcttcagctcccttgtaatgccccgttcgaaaaacttgagggtcctatatgcagttcaatacgactggcacagcaggctgtttgtttggctgcttgtaagaagctgcatgagatgggtgccttcacagatacgctcttacctgacagaggaagcggggaaggggaaaaaactgagcagaatgatgaaggtgaaccacttcctggaacagctcgccatagagagttttatcctgaaggtgttgctgatattctacggggagaatggattttatctggcagagatggctaccaaaactctcaatttattaagttatatatgtattctgtgaactgtgtaaacgttgggacttctaaggaccctttcgttacacaactttcaaattttgcaattatttttggcaatgagctggatgcagaggttttatcgacgacgatggatctctttgttgcaaggacaatgataacaaaggcatctctcgtattccgtggacgaattgaaattacagaaagtcagctggtgttgctgaagagctttcatgttaggctcatgagcatagtacttgatgttgatgttgatccctcaactacaccttgggatcccgcaaaagcatacctctttgtccctgtaggagctgagaagtgtacagatcctttaagagagattgattggactttggttaacaacattgttaacactgatgcctggaacaatccacttcagagggcacgcccagatgtctatctaggcaccaatgaacgaacacttggtggggataggagggaatacgggtttgggaaattgcgccatgggactgcttttggacaaaaggcccatcctacttatggtattaggggagctattgctgaatttgacattgtgaaagcatctggattagttcctgctcgtgatagaggacattttagtgattatcagaaccaaggcaagttgttcatggcagattcatgttggaatgctaaagatcttgctggaatggttgtcactgctgcccactcagggaagaggttttatgtggactgcatttgctataacatgaatgcagaaaattcattccctaggaaagaaggctacctggggccattggagtatagttcatatgctgattactacaagcagaagtacggtgtggagttaatctataggaaacagcctcttatacgggcccgtggtgtttcatattgcaagaatcttctttctcctagatttgagcattctgacgctagagaaggtgacttctctgagaaccttgacaaaacatactacgtgtatttgccacctgagttgtgccttgtgcacccacttcctggatcactagttcgtggagctcagaggttgccctcaataatgagaagggtggagagcatgcttcttgcagttcaattgaaggacataattgattaccctgttcctgcaactaagatactagaagccttgactgctgcatcatgccaggagacattatgctatgaaagagcagagctgctgggtgatgcatacctgaaatgggtcgtgagtagattcctcttcctaaaatatcctcaaaagcatgagggacagcttacaaggatgcggcagcagatggttagtaacatggtcctgtaccaatatgctctgaataaaaccctccaatcatatattcaagcagaccggtttgctccatcaagatgggcagctccaggagtgctacctgtattcgatgaagagtctagagagtatgaaccttccatctttgacgaggaatcaactggttgcgagttacagaaggaatcctatgatgactatgcagataacatgcaagaagatggtgaaattgaaggagactctagctgctatcgggttctgtcgagcaaaactttagcggatgttgttgaggcacttattggggtgtattatgtagcaggagggaaaatcgctgcaaaccacctgatgaaatggattggaattcatgcagagttggatcctgaagagatcccacctccaaagccatatgacattcctgagagcataatgagaagcatcaactttgacacgttgaaaggtgtcttgggtatcgaattccagaataaaggtttacttgttgaggccataacacatgcatcgagaccatcttctggtgtttcctgttaccagcgtttggaatttgttggtgatgctgtgttggatcatctcataaccaggcatttgttttttacatatactgacctacctcctggccgcttgactgatttgagagctgcagctgttaataatgagaattttgcaagggttgcagttaagcataagctgcatgtacatcttcgccatggatcatctgcattagaaacacagattcgagagtttgtgaaagatgtccaagaggagcttttgaaaccaggtttcaattcttttgggcttggggattgtaaggctcctaaagttcttggtgacattgttgagtcgattgctggcgcgatattcctggatagtggatatgatacctcagttgtctggaaggtttttcagccactccttcatccaatggtgacgccagagacccttccgatgcatccagttagggagctccaagaacgctgccaacagcaggctgaaggcctggaatacaaagcatcccgagcaggcaacatagctactgttgaagtatttgttgatggtgttcagatcggtgtagctcagaaccctcagaagaagatggcacagaagttggcagcgaggaatgcacttgtggtcctgaaggagaaggaaaccgcaacaaagaaagaagatgaaagggatggcgagaagaaaaatggtgctcagatgttcaccaggcagaccctgaacgacatctgcttgagaaggcagtggccaatgcctcagtacaggtgcgtaaacgagggtggccctgcccatgctaaaagattcgtctattcggtgagggtgaacacttctgatcgtggatggacggatgaatgcattggagagccaatgcctagtgtgaagaaggctaaagactctgctgcagttcttctcctcgagcttctgaatagagatttccctgacaagcctgacggtaagcagccgtaggcactgtggttgttattggtggtggcattgtgggcatttgtggtgttaggcattcagcattcttacacaaacacaaaattaattacccattcagtgctcctcagctttggctaataaggacataaccagagctggtgagtgagagtagaggattatttttacctgcgctggcgattatagtggtgagatgtgataaataggagccgcgatagaaaaaggatagcttgatagcataggataggcgcggggcctcataattctgtcgtgcaatgtgtaaacaaaacaatgcattaatccaataaatttatattaccattgcgctggcatgcta

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