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2024-03-29 21:26:58, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_015795183            7977 bp    mRNA    linear   PLN 07-AUG-2018
DEFINITION  PREDICTED: Oryza sativa Japonica Group starch synthase 3,
            chloroplastic/amyloplastic (LOC9268758), transcript variant X2,
            mRNA.
ACCESSION   XM_015795183
VERSION     XM_015795183.2
DBLINK      BioProject: PRJNA122
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_029263.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Aug 7, 2018 this sequence version replaced XM_015795183.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Oryza sativa Japonica Group
                                           Annotation Release 102
            Annotation Version          :: 102
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.1
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7977
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /chromosome="8"
     gene            1..7977
                     /gene="LOC9268758"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 mRNAs, 26 ESTs, 21 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 56 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:9268758"
     CDS             2178..7544
                     /gene="LOC9268758"
                     /codon_start=1
                     /product="starch synthase 3, chloroplastic/amyloplastic"
                     /protein_id="XP_015650669.1"
                     /db_xref="GeneID:9268758"
                     /translation="
MEMALRPQSLLCPRSRLKVVIRPASSASGGGLAQYFLMTRRYTGSRIVRCMVSSSDCPNRKAKRTISLHTEVASSRGYAPRIAAESSIQEREHINSDEETFDTYNRLLRNESTEWKKLDTTEVDLSQDVSSSSMRKVDATDEAKLDILEDDLPRNLLNGVTMGEVDMLDEAGAEDDVFEVDLSALHNSTVGKMDAVNEVGTENDLFEVDLSALHSAAVGKVDVVDGAKAKEDLFEMDSLALHSVTMGKVDAINAAGAEGDKFEVDLSALASNNSMIEAVNVMDEAKAIEDTLEVDLSGNATSSSTYGEVKFEVDSLGNTSSTVMYGPADGAYEPRSDEVTFKVDSSENASNNVMYGRADVVDESWADEGIFEVDFFTNASSGAEYGKVDVVDEAKTDDFTFEIDSLEKDSNNKMHGKAHMVDEAWDDEAIFEVDLFGNASSIPIYGEVNVLDEARADDGKFEVDLLGNTSSNSTHEEVDVVDEAQTGEATFEVDLLGNALSSAIYKEVPVMGGAQDDEVDVDFSINASITETEKEADAVDEARVEDETFDMDLVGKQISIDSMNDDVVEEGTKHHRYPMLSSAFIEVKTIHETPVSLKPELMSVVMDQEQDKPISSVYQQEGSIFNLHAENQSTVDFHEREQMAITFDKQKESVAKLSKEDQQTAGLPEQNMSFDGVHRKSQSIIGLPFQHQSIVSSPEKYRSIVGFHGQNQSIISSHKQDKSIVGVPKKIQSIVGSTKHDDSIVGFRKQDRSIVSVPEQKQSIVGFHKQDLSIVAVSEQNLSIVAIPRESQSKQISIVRRHDPLHLKEVETKDRDGISKKSGGDDDLPHMLFEEELSQVEDVARAIAYKKQHEVDVISLTPDIQESPQDNIDPQELRRMLQELADQNCSMGNKLFVFPEAVKANSTIDVYLNRNLSALANEPDVHIKGAFNSWRWRPFTERLHKSELSGDWWSCKLHIPKEAYRLDFVFFNGRLVYDNNDSNDFVLQVESTMDEDSFEEFLVEEKKRELERVATEEAERRRHAEEQQRMGEQRAAEQAAREQAKKEIELKKNKLQNLLSSARTHVDNLWHIEPSTYRQGDTVRLYYNRNSRPLMHSTEIWMHGGCNSWTDGLSIVERLVECDDENGDWWYANVHIPEKAFVLDWVFADGPPGNARNYDNNGRQDFHAILPNAMTNEEYWVEEENCIYTRLLHEIREREEAIKIKVEKRAKMKSEMKEKTMRMFLLSQKHIVYTEPLEIRAGTTVDVLYNPSNTVLNGKPEVWFRWSFNRWMHPSGVLPPKKMVKTEDGCHLKATVSVPSDAYMMDFVFSESEEGGIYDNRNGTDYHIPVSGSNAKEPPIHIVHIAVEMAPIAKVGGLADVVTSLSRAIQELGHHVEVILPKYNFMNQSNVKNLHVRQSFSLGGTEIKVWFGLVEDLSVYFLEPQNGMFGGGWVYGGNDAGRFGLFCQSALEFLLQSGSSPHIIHCHDWSSAPVAWLYKEHYAESRLATARIIFTIHNLEFGAHFIGKAMTYCDKATTVSHTYSKEVAGHGAIAPHRGKFYGILNGIDPDIWDPYTDNFIPMHYTSENVVEGKNAAKRALQQRFGLQQTDVPIVGIITRLTAQKGIHLIKHALHRTLERNGQVVLLGSAPDPRIQSDFCRLADSLHGENHGRVRLCLTYDEPLSHLIYAGSDFILVPSIFEPCGLTQLVAMRYGSIPIVRKTGGLYDTVFDVDHDKDRARVLGLEPNGFSFDGADCNGVDYALNRAISSWFEARGWFHSLCKRVMEQDWSWNRPALDYIELYHSAHKF"
     misc_feature    2391..>2723
                     /gene="LOC9268758"
                     /note="synthase/transferase; Region: PLN02316"
                     /db_xref="CDD:215180"
     misc_feature    4800..7538
                     /gene="LOC9268758"
                     /note="synthase/transferase; Region: PLN02316"
                     /db_xref="CDD:215180"
ORIGIN      
aggcaaagtcagcccaccaccaaatcgacacgcagatcccggatcctcgccggccaccgtccccctcactccttcaccgccgccgtccgccgccgacgccgaccaccgtgcgccgcgatcttcaccgccgcccgccgccggcttccccccaccgccttccttcctgctacttcatccccatcgcccggcgccacctccactcccgccgcatgcttcaccgccgctcgtctccccgccagcccttcacctccgccgacaccgatatgcgcttgtgtgttgatgtcgggcgccagattctgggcgttaccactgactgcggttaattttgttggctacattggtaatctattcatgacacggggaattttgttattactggatttggggctttgtggatgtggatgaacagttcagggaaaaaagaaatgacgaaaagcaaaatttattttcttgctttttttgttgagtgcctgatgtagtgaattgttgatgcatgttgacacgcggcaaatggagatgactggagctcttggagttgggaggacccttcaaactggagctgcccataatggtttaccagtttggtatggtttccattgattccaataatctcattcacgtttcgttgcgttggcaagtctatgagatcgtctgaaagttgaattgattctgggtgcttcgattaatatcgcaaacaactatcgaactgtcatatgttaacgtcagagtgttgatgcatttctggtgatagccattcaggactgaaaacatgaaatttgtgaagaaactgctctaaggggtttcatcatgctactcttcaagataagctatgaaagtatttctgtactttgatgccttatttccacattttgatgtctcattaagacacgacacgtttactaaacctacacgagaattggttctctttacacatgtctagaaatttgaagacccggataattacattcccggtctcgtacgcttacgcacgggcttgtgtgtgcacataaatggctagaacatgactccgccacccaccaaaatggcttctagctatattttgtttgacaacttgatttctggaaaattaaacgtaacggcatctccttctgcgctggaatcaaacagccaaggctactgttggaagtcacgcaaccaattataacttgcctctcttgtcgtgtgtaaatggtactacgagcatgaccacactagagattatgtaagctaaccacgcttaggggttaaatatactttttcaaaaatagaacacaaaagaataagtaaaaatatgattttcgttgcttcacatgaaaattaagaaggtgagggcctgggcgtgcctacgaattctcaatggaaaacatttgtgaaataggagatttctagaagaactatgagatacattccaaaaaggaccacataggaaactttttatcaggtttgaatcctttatagtccctactttatttttgcattgttctaaatgaggttcaaatgacaaattgatcagaatacatgtaataaagaaaaaatcatgcaggcaaagtcaaaataaaggagagtaatgttaacgcacctggcaatgtgacaacaatctccacttacatctgattatgtatctacaaatgtgaactacctagacagaaaaataaatactcaattaggtttaactcaacattcacataagggtaaatggttttccaaaataggttcggcagttttgaaacatgtccataattttacgtataacttccgtgataagttgcttgacttgttggcatgaggcacatggaatgttccagaacagcacacaattcacaagaacactactgtccacactcatgcctctcatgagcaaccaggtggcccacggggcccacagtatgccacttacatattccttgtgtgcacacaaaaaaacaaacagcagaggaaaactaactacagggtagaagccaagacggaaaggaaggatcataattagtttaataaaaaaagataagaaaaaaacaaggttctcagtgtggtgtttgtcaggacagtgcaaaactccactaaagatgtgctcatgtgctgtacctgtgttctatatttagttcttcttgagagatagagatcaagcagaggaggcaccgctaggtggtgtgttcagcgggctttaggaggttttggcaatggagatggctctccggcctcaaagccttctatgccctcggagcaggctgaaggtcgtcatccggccagctagcagtgccagcggtggtggcctcgcgcagtatttcttaatgaccaggagatatactggaagcagaattgttcgatgcatggtttcaagttcagactgtcctaataggaaagcaaagaggacgatttcccttcatacggaagtcgcttcttctaggggatatgctccgagaattgctgctgaatcaagtattcaggagcgagaacatattaatagtgatgaagaaacatttgatacgtacaacagattactacgtaatgagtcaacagagtggaaaaagttagatactactgaagtggatttgtcacaagatgtttcaagcagttcaatgaggaaagtggatgcgacggatgaagctaagctagatatacttgaggatgatttgcccagaaatttgttgaacggtgtaacaatgggggaagtagatatgttggatgaagctggggcagaagatgatgtatttgaggtggacttgtcagccttgcataattccacagtggggaaaatggatgcggtaaatgaagttgggactgaaaatgacttatttgaggtggatctgtcagcattgcatagtgctgcagtggggaaggtggatgtagtagatggagctaaagctaaagaagatttgtttgagatggattcattagcattgcacagtgttacaatggggaaggtggatgcaataaatgcagctggagctgaaggagacaaatttgaggtggatctgtctgcgctcgcgtcgaacaattcaatgatagaggcagttaatgtgatggatgaagctaaggctatagaagacacactcgaggtggatttgtcaggaaatgctacaagcagttcaacatatggggaagttaaatttgaggtggattcattaggaaatacttcaagcactgtaatgtatgggccagcggatggagcgtatgaacctcggtccgatgaagtcacttttaaggtggattcatcagaaaatgcgtcaaacaatgtaatgtatgggagagcagatgtggtggatgaatcttgggctgatgaaggcatatttgaggtggatttttttacaaatgcttcaagcggcgcagaatatggaaaagtggatgtggtggatgaagctaaaactgatgatttcacatttgagattgattcattagaaaaagattcaaacaataaaatgcatgggaaagctcatatggtggatgaagcttgggacgatgaagccatatttgaggttgatttgtttggaaatgcttcaagcattccgatatatggggaggtgaatgtgttggatgaagctcgggctgatgatggaaaatttgaggttgacttattagggaatacttctagcaattcaacacatgaggaagtggatgtggtagatgaagctcaaacaggtgaagccacatttgaggtggatttgcttggaaatgctttaagcagtgcaatatataaagaagtgcctgtcatgggtggagctcaggatgatgaagttgatgtagatttctcaataaatgcttcaatcaccgaaacagaaaaggaagcagatgcagttgatgaagctagagttgaagatgagacatttgatatggatttagtaggtaaacagatatcaatcgattctatgaatgatgatgtagttgaagaagggactaaacatcacagatatccaatgttgtcttcagcattcatagaagtcaagaccattcatgaaacacctgtaagtttaaagcctgaacttatgtcagttgtcatggatcaggaacaagacaaaccaatttccagcgtttatcaacaagaaggatcaatttttaatttgcatgcagaaaaccaatcaacggtagattttcatgaacgggagcaaatggctattacttttgataaacaaaaggaatcagttgctaaactctctaaagaagaccaacagactgctggtttacctgagcaaaacatgtcctttgatggtgtccataggaaaagccagtcaattattgggctcccatttcaacaccaatcaattgttagttcccctgaaaaataccgatcaattgtgggttttcatggacaaaatcaatcaatcatcagctctcataaacaagacaaatcaattgttggtgttcctaaaaaaattcaatccattgttggttccactaagcatgatgattcaattgttggtttccgcaaacaagacagatcaattgttagtgtgcctgagcaaaaacaatcaatagttggttttcataaacaagatctatcaattgttgctgtcagcgaacaaaatctatcaattgttgctatacctagagagagtcaatcaaagcaaatttctattgttcggagacatgatccactacatttgaaggaagtggaaacaaaggatagagatggcatatctaaaaaatctggtggtgacgatgatttgccacatatgctcttcgaagaagagctttcacaggttgaagatgtagcaagggcaatcgcctataaaaagcagcatgaagttgatgtaatctctttgactccagatatccaggagtcaccacaggacaatatcgacccacaagaactccgaaggatgctccaagaacttgctgaccagaattgttcaatgggtaacaagcttttcgtttttccagaggcagtgaaggctaattcgacaattgatgtatatttgaatcgtaacctatcggctttggcgaatgagcctgatgtccacatcaaaggagcattcaatagttggagatggaggcctttcaccgaaagactgcacaagagtgaattgagtggggattggtggtcttgcaaactgcacatacccaaggaagcttatagattagactttgtgttcttcaatggtcgtttagtctatgataacaatgatagtaatgattttgtgctgcaagtagaaagtacaatggatgaagattcctttgaggagttcttggttgaagaaaagaaaagagaacttgagagagttgccactgaagaagctgaaaggaggaggcatgctgaagagcagcagcgaatgggagaacaaagggctgcagaacaagctgccagggaacaggctaagaaggagatagagttgaagaagaacaaattgcaaaatctgttgagttcagccagaacacatgttgataatttgtggcacatagagcctagcacatatagacaaggggacactgtcagattgtactataacagaaactcaaggccgcttatgcatagtactgagatctggatgcatggtggttgcaatagttggactgatggactctctattgttgaaagacttgtcgaatgtgatgacgaaaatggtgattggtggtatgctaatgttcatatacctgaaaaggcctttgtattggactgggtttttgctgacgggccacctggaaatgcaaggaattatgacaacaatggtcgacaagattttcatgctattcttccaaatgccatgactaacgaagaatattgggttgaagaggaaaactgtatctatacaaggcttctccacgagatcagagaacgggaggaagctattaaaataaaggttgagaaaagagcaaaaatgaaatctgagatgaaggaaaagactatgagaatgtttctactttctcagaaacacattgtttatactgaaccacttgaaatacgtgctggaacaactgtggatgttctatataatccttctaatacggtgctgaatggaaagccagaggtttggtttaggtggtcctttaaccgatggatgcatccaagtggtgttttaccacccaagaagatggtgaaaacagaagatggttgtcacttaaaagcgacagttagtgttccatcggatgcttatatgatggactttgttttctctgagtcggaagaaggtggaatctatgacaacaggaatgggacagactatcatattcctgtttctggttccaatgcaaaggagcctcccattcatattgtccatatagcggttgagatggcacccattgcaaaggttggaggccttgctgacgttgtcacaagtctttcacgtgcaattcaagagttaggccatcatgttgaggttattctcccgaaatataattttatgaatcaaagcaatgtgaagaatttgcatgtacgtcaaagcttttctttgggtggtacagaaattaaagtgtggtttggactagttgaagacctgtctgtttacttcttggaacctcaaaatgggatgtttgggggtggatgggtatatggagggaacgatgctggcagatttggcttgttctgtcagtctgctctagagttcctccttcagagtggatcttctccacatataatacactgccatgattggtcaagtgcaccagttgcctggctatacaaggaacactatgcagaatccaggttggcaactgcccggattatatttaccatccataatcttgagtttggagcacattttattggaaaagcaatgacatactgcgacaaagccacaactgtttctcacacgtattcaaaggaagtcgcaggtcatggtgccatagctcctcatcgtggaaaattctatggaattctcaatggaattgatccagatatctgggatccatatactgataacttcatcccgatgcattatacttctgaaaatgtggttgaaggcaagaatgctgcaaagagagcattgcagcagaggtttggactgcagcagactgatgtccccattgttggaatcatcactcgtctgacagcccagaagggtatccacctcattaaacatgcacttcatcggacacttgaacgcaatggacaggtggttttgcttggttcagctccagatcctcggatacagagtgatttctgcagattggctgatagtcttcatggtgaaaaccatggcagggttagactatgtttaacttatgacgagcctctctcacacctgatatatgctggctctgacttcatccttgttccatccatctttgaaccttgcggtttgactcaacttgttgccatgcgctatggatccatccctattgttcggaaaaccggaggactttacgacactgttttcgacgtagaccatgacaaagaccgggctcgagttctaggccttgaaccaaatgggttcagctttgatggagctgactgtaatggtgtggattacgccctgaacagagcaatctcttcttggtttgaagcccgcggttggttccactccctctgcaaaagggtcatggagcaagactggtcctggaaccggcctgccctggactacattgaactgtaccattcagctcacaaattttgaggcccccatccaacggtggcaagagaaagcaagcattggcagatactacaaattaaatgaaacatggctcaaagttaaaatattttatctgagctgcagatacaaattaactcaaacatggttcaaagttaagatcttttatctgagctacacatatatatgcagaataaagactctttacagcatgcataaacaattgtgggagtatgtatcagctatgtttcctattctcagttttaattatgaatacttgatttagtaccagaaccgtgtacatatgtttgcaaaattgcaagtaaaatgaaggtgtagaactataatgttgttctatggtttcttttgcgctacatctggactatggctatggcgtggctgtgtatgccttgcaagagaaatattcccaatgacaatatatggctgctcaattggcttc
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]