LOCUS       XM_015794324            1184 bp    mRNA    linear   PLN 07-AUG-2018
DEFINITION  PREDICTED: Oryza sativa Japonica Group transcription factor ILR3
            (LOC4344627), mRNA.
ACCESSION   XM_015794324
VERSION     XM_015794324.2
DBLINK      BioProject: PRJNA122
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_029263.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Aug 7, 2018 this sequence version replaced XM_015794324.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Oryza sativa Japonica Group
                                           Annotation Release 102
            Annotation Version          :: 102
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.1
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1184
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /chromosome="8"
     gene            1..1184
                     /gene="LOC4344627"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 mRNAs, 50 ESTs, 18 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 134 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:4344627"
     CDS             133..894
                     /gene="LOC4344627"
                     /codon_start=1
                     /product="transcription factor ILR3"
                     /protein_id="XP_015649810.1"
                     /db_xref="GeneID:4344627"
                     /translation="

MSGTPADGGGGGGGGGGGSGDDWFLDCGILEDLPAAACGAFPWDASPSCSNPSVEVSSYVNTTSYVLKEPGSNKRVRSGSCGRPTSKASREKIRRDKMNDRFLELGTTLEPGKPVKSDKAAILSDATRMVIQLRAEAKQLKDTNESLEDKIKELKAEKDELRDEKQKLKVEKETLEQQVKILTATPAYMPHPTLMPAPYPQAPLAPFHHAQGQAAGQKLMMPFVGYPGYPMWQFMPPSEVDTSKDSEACPPVA"

     misc_feature    391..618
                     /gene="LOC4344627"
                     /note="basic helix-loop-helix (bHLH) domain found in
                     Arabidopsis thaliana protein IAA-leucine resistant 3
                     (ILR3) and similar proteins; Region: bHLH_AtILR3_like;
                     cd11446"
                     /db_xref="CDD:381452"
     misc_feature    order(391..396,403..408,412..417,427..429,484..489)
                     /gene="LOC4344627"
                     /note="putative DNA binding site [nucleotide binding];
                     other site"
                     /db_xref="CDD:381452"
     misc_feature    order(421..426,433..435,442..447,454..456,487..492,
                     499..504,511..513,520..522,529..534,541..543,550..555,
                     559..564,571..573,580..585,592..594,601..606)
                     /gene="LOC4344627"
                     /note="putative dimer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:381452"
     misc_feature    547..>846
                     /gene="LOC4344627"
                     /note="conjugal transfer pilus assembly protein TraB;
                     Provisional; Region: PRK13729"
                     /db_xref="CDD:184281"
     misc_feature    <574..678
                     /gene="LOC4344627"
                     /note="N-terminal domain of unknown function (DUF4140);
                     Region: DUF4140; pfam13600"
                     /db_xref="CDD:433340"
ORIGIN      

acccacccaccctcctaatctccacccaaaattctccaatcgcgaggcgaggcgaggcgaagctcctcgtcgtcagaatccgcgaaaacatcgccaccaccacgagaggaggaggaggagagcgcggcggcgatgtccggtaccccggcggacggcggcggcggaggcggcggaggcggcggagggagcggggacgactggttcctcgactgcggcatcctcgaggacctcccggcggccgcgtgcggggccttcccgtgggacgcatccccgtcctgctccaacccgagtgtggaagtaagcagctatgtgaacaccacctcttatgtcctcaaggaacctggcagtaataaacgtgtaaggtcagggtcttgtggtaggccaacatcaaaagcttccagggaaaagatcagaagagataagatgaatgataggtttcttgaattggggactactttggagcctgggaagccagtaaaatctgacaaagctgctatcctaagtgatgccactcgcatggtaattcaacttcgtgctgaagcgaagcagctaaaggatactaacgagagtcttgaagataagattaaagaactgaaggcagagaaggacgagcttcgtgatgagaagcagaagctgaaagtagagaaggagacattagagcagcaggtgaagattctgactgcaactccagcctacatgcctcaccccacattgatgccagcaccgtacccacaagcaccacttgcccccttccaccatgcccaggggcaagccgcggggcagaagctgatgatgccttttgttggatacccggggtacccgatgtggcagttcatgccgccttccgaagtcgacacctccaaggacagcgaagcgtgcccgcctgtcgcgtaatgcttcatcggttgcgttatgtgaattaatcgtaacctgaaaccgcttagttgctcaatccattggttgggcatcgtcgtccctgattcacattcactattgttcttgtgttagtagttcgtttttgtatggaagtaagctgacatttgtggcgctctatagaggctactgcccccttttaatgtacaatacaatttttccggagaaaggaagaatgctcattcttgttctctgcagacacccggtgtcaaattcagtagcatcatatacaccatttcttatcacccaaa

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