LOCUS       XM_015792104            3307 bp    mRNA    linear   PLN 10-JUL-2024
DEFINITION  PREDICTED: Oryza sativa Japonica Group protein argonaute 16-like
            (LOC4342886), mRNA.
ACCESSION   XM_015792104
VERSION     XM_015792104.3
DBLINK      BioProject: PRJNA1123306
KEYWORDS    RefSeq; corrected model.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_089041) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jul 10, 2024 this sequence version replaced XM_015792104.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_034140825.1-RS_2024_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/21/2024
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 2 indels
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-348               CP132241.1         9562758-9563105     c
            349-528             CP132241.1         9560935-9561114     c
            529-731             CP132241.1         9560638-9560840     c
            732-950             CP132241.1         9559703-9559921     c
            951-1087            CP132241.1         9559456-9559592     c
            1088-1185           CP132241.1         9559284-9559381     c
            1186-1283           CP132241.1         9559096-9559193     c
            1284-1440           CP132241.1         9558278-9558434     c
            1441-1557           CP132241.1         9558054-9558170     c
            1558-1665           CP132241.1         9557870-9557977     c
            1666-1728           CP132241.1         9557727-9557789     c
            1729-1842           CP132241.1         9557532-9557645     c
            1843-2008           CP132241.1         9557263-9557428     c
            2009-2124           CP132241.1         9557061-9557176     c
            2125-2262           CP132241.1         9556819-9556956     c
            2263-2393           CP132241.1         9555380-9555510     c
            2394-2459           CP132241.1         9555145-9555210     c
            2460-2523           CP132241.1         9551073-9551136     c
            2524-2635           CP132241.1         9550884-9550995     c
            2636-2709           CP132241.1         9550720-9550793     c
            2710-2804           CP132241.1         9550502-9550596     c
            2805-2836           CP132241.1         9550366-9550397     c
            2837-2916           CP132241.1         9550194-9550273     c
            2917-2955           CP132241.1         9550153-9550191     c
            2956-2956           "N"                1-1
            2957-3307           CP132241.1         9549802-9550152     c
FEATURES             Location/Qualifiers
     source          1..3307
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="7"
     gene            1..3307
                     /gene="LOC4342886"
                     /note="protein argonaute 16-like; The sequence of the
                     model RefSeq transcript was modified relative to its
                     source genomic sequence to represent the inferred CDS:
                     inserted 1 base in 1 codon; deleted 2 bases in 1 codon;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 3 ESTs, 59 long SRA reads, 15 Proteins, and
                     97% coverage of the annotated genomic feature by RNAseq
                     alignments, including 83 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:4342886"
     misc_feature    1
                     /gene="LOC4342886"
                     /experiment="COORDINATES: cap analysis [ECO:0007248]"
                     /note="transcription start site"
     CDS             349..3030
                     /gene="LOC4342886"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     deleted 2 bases in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: protein argonaute 16-like"
                     /protein_id="XP_015647590.1"
                     /db_xref="GeneID:4342886"
                     /translation="

MSDNMAAKIGEIVQVHNDNPVKRVPIARPSFGREGKQIKLLSNHFTVKLSGIDAVFYQYSVSIKSEDDKVIDGKGIGRKVMDKVLQTYSSELAGKEFAYDGEKCLFTVGPLPQNNFEFTVILEETSSRAAGGSLGHGSPNQGDKKRSKCTHLAKKIVVGISYAAKIPLKSVALALQGSESDHAQDALRVLDIVLRQQQAKRGCLLVRQSFFSDDFRNLVDLTGGVSGCRGLHSSFRTTIGGLSLNMDVSTTMIVTPGPVFDFLLTNQNVRDIRDIDWPRAKKMLKNLRVKAIHNNMEFKIIGLSDEPCSRQTFPMKVRNGSSEGETVEITVQEYFKSKQVDLTMPYLPCLDVGKPKRPNYVPIELCHMVSLQRYTKALSSQQRATLVEKSRQKPQERMRVVTDAVKNNRYDDDPILSSCGIKIEKQLTRVDGRVLSAPTLVVGNSEDCIPNRGRWNYNNKRLFEPVKIERWAIVNFSARCDMSRISRDLINCGRTKGIIIERPFTLVDEDSQSRRCTPVVRVESMFEKVKANLPGPPEFLLCVLPERKNCDLYGPWKKKNLHEMGIITQCIVPSVKMNDQYYTNVLLKINAKLGGMNSKLSLEHRHMIPIVNQTPTLILGMDVSHGSPGRADVPSIAAVVGSRCWPLISRYRASVRTQSPKVEMIDSLFKPLDDGKDDGIIRELLLDFYKTSQQRKPKQIIIFRDGVSESQFSQVLNVELNQIIKAYQYMDQGPIPKFTVIIAQKNHHTKLFQENTPDNVPPGTVVDSGIVHPRQYDFYMYAHAGPIGTSRPTHYHVLLDEIGFLPDDVQKLVLSLSYVYQRSTTAISVVAPICYAHLAAAQMGQFMKFEEFAETSWKWWCPFVIRSSGXQSCRACMLMSAVRCSFVEVVLVS"

     misc_feature    403..2916
                     /gene="LOC4342886"
                     /note="protein argonaute; Provisional; Region: PLN03202"
                     /db_xref="CDD:215631"
     polyA_site      3307
                     /gene="LOC4342886"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

ggttcgatattttccctctcctctctcgttttcccgtcgcgttcgctggggtggagcggcatttagggtttgtgcgccggccgccgccctccccgcacgacgccgacgccgccctcctcgcccaacgccggctcagccccttctcctccccgcccgacgccgccccttctcctccccgtcccacgccgaccccgcccgacgccggcgccactctgcttgtccccggccggcgccgagcctgctcctccccgcccgacgccggcgccgccgacgctgctctgctcctccccgaccggcgccgacctgctcctcccagcccggagcccgacgccggcacatctcatccagatgtccgataacatggctgccaaaattggtgaaattgtccaagtacataatgataatcctgtaaagagagtacctattgcacgacctagctttggccgtgaaggaaagcaaatcaagctgctctcaaaccacttcactgtgaagcttagtggaattgatgcggttttctaccaatacagtgtttccatcaaatctgaggatgataaggtgattgatggaaagggtattggccgaaaggtcatggataaagtgctgcaaacatacagctctgagcttgctgggaaggaatttgcgtatgatggtgaaaaatgtctatttactgtggggcctcttccacagaacaactttgagttcactgttatcttggaggaaacatcttcaagagctgctggtgggagtctagggcatggaagccctaatcaaggtgacaagaagcgatcaaagtgcacacatcttgcaaaaaaaattgtagtgggcataagttatgcagcaaagattcccctgaagtcagtagctttggcccttcaaggaagcgagtcagatcatgctcaggatgctctgagagtccttgatattgtcttaaggcaacaacaggctaagcgaggttgcctgcttgttaggcaatcatttttcagtgatgactttagaaacttagttgatttaactggtggagttagtggatgtcgtggactccactcgagtttccgtactaccattggtggtttatctttgaacatggatgtttcaaccactatgattgtgactcctggaccggtttttgatttcctccttacaaatcaaaatgtcagagacattagagatatcgactggcccagggccaagaaaatgttgaaaaacctgagagttaaagctattcacaataacatggagttcaagatcattggtctgagtgatgagccatgctctagacaaacattccccatgaaagtacgaaatggaagcagtgaaggtgaaaccgttgaaattactgtccaggaatattttaagtccaagcaggtggatttaacaatgccttatttgccatgtcttgatgtgggaaaaccaaaacgcccaaattatgttccaattgagctgtgccatatggtatcacttcaaagatatacaaaggcgctttcttctcaacaaagagcaaccttggttgaaaaatcacgtcagaaacctcaagagcgcatgcgagttgttactgatgctgtaaaaaacaatagatatgatgatgatccaatcttatcttcttgtggaattaaaattgagaaacaactcactcgtgtcgatggtcgtgttctgtctgcaccaacgctagtcgtggggaatagtgaagattgcattccaaacagaggcagatggaactacaataacaagaggctatttgagcctgtcaagattgagcgttgggcaattgttaatttctctgctcggtgtgacatgagccggatctcaagagacctgataaactgtggacgaactaaaggcattattattgaacgccctttcaccttggtagatgaggatagccaatctaggagatgtactcctgttgtaagggttgaaagcatgtttgaaaaagtgaaagcaaaccttcctggtcctcctgaatttttgctgtgtgttttaccagaaaggaaaaattgtgatctctatgggccatggaagaagaaaaaccttcatgagatgggtattattactcaatgcattgttcctagtgttaagatgaatgatcagtactataccaatgttcttctgaaaatcaatgctaagcttggtggaatgaactccaagctttcattggagcatcgacatatgattcccattgtcaatcaaacacccacattaattttgggaatggatgtttcacatggttcgccaggtcgagctgatgtaccatcaattgctgcggttgttgggtccagatgttggccgctgatatcacgctacagagcatctgtccggacccagtctccaaaggtagagatgattgattctctttttaagccactggacgatggaaaagatgatggcataataagggaacttctactggacttctacaagaccagtcaacaaagaaagccgaagcagataatcattttcagggatggtgtgagcgagtctcaatttagccaagtactgaatgttgagcttaatcaaattataaaggcatatcaatatatggatcaggggccaattcctaagttcacagtgatcattgctcaaaagaatcaccacacaaaacttttccaagaaaatactccagacaacgttcctccagggactgttgtagattctggtattgttcatccaagacagtatgatttctacatgtatgctcatgctggacctataggtacctcaaggcccacccattaccatgtcttgctcgatgagattggtttcttgcccgatgacgtgcagaaactagttttgtcgctttcttatgtgtatcagaggagcaccactgcaatatctgttgtggcacctatctgttatgctcatctcgcagcagcgcagatgggccagttcatgaaattcgaggaattcgctgagacttcgtggaagtggtggtgtcccttcgtcatcaggagcagtggtncccagagttgccgcgcctgcatgctgatgtctgcagttcgatgttcttttgttgaggtggtgttagtcagctagtgtgcagcagggctgatccttcttttttttttgaaggaaccaaatacggagtacttgttaggcacttttgtagtactctagattgatactatgagatacatctaggttgggtagggagcatttttttttagatgatatagtgctcctaatgatatagttctgttagtgctcagctattaggaagtaaaggcttacccttgatggtaggtttatgaattcaagacgctaactttgcgccatatctaattgtcaaccagttaaacagatgattcgcaca

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