2024-04-25 23:51:28, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_015790527 2700 bp mRNA linear PLN 07-AUG-2018 DEFINITION PREDICTED: Oryza sativa Japonica Group WUSCHEL-related homeobox 13 (LOC107281632), mRNA. ACCESSION XM_015790527 VERSION XM_015790527.2 DBLINK BioProject: PRJNA122 KEYWORDS RefSeq; includes ab initio. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_029262.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Aug 7, 2018 this sequence version replaced XM_015790527.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Oryza sativa Japonica Group Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 17% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..2700 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /cultivar="Nipponbare" /db_xref="taxon:39947" /chromosome="7" gene 1..2700 /gene="LOC107281632" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 94% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:107281632" CDS 1..843 /gene="LOC107281632" /codon_start=1 /product="WUSCHEL-related homeobox 13" /protein_id="XP_015646013.1" /db_xref="GeneID:107281632" /translation="
MTLLAVIVFGGGGGGSRSSALPSLSTGVAGVEGSATGPWLPESLTLNAATHRIPSTSPLSIPQTLTITRDPPYPMLPRSHGHRTGGGGFSLKSSPFSSVGEERVPDPKPRRNPRPEQIRILEAIFNSGMVNPPRDEIPRIRMQLQEYGQVGDANVFYWFQNRKSRSKNKLRSGGTGRAGLGLGGNRASEPPAAATAHREAVAPSFTPPPILPPQPVQPQQQLVSPVAAPTSLSSSSSDRSSGSSKPARATLTQAMSVTAAMDLLSPLRRSARPRQEQRHV"
misc_feature order(319..333,337..339,391..393,409..411,460..462, 466..471,478..483,487..495,499..504) /gene="LOC107281632" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature 325..501 /gene="LOC107281632" /note="Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner; Region: homeodomain; cl00084" /db_xref="CDD:444687" misc_feature order(325..327,334..336,469..471,478..483,490..492) /gene="LOC107281632" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" ORIGIN
atgacacttttggcggtgatcgtgttcggcggcggcggcggtggctcaaggagcagtgccctgccatcattgtccacgggggtggcaggcgtggaggggtcggccacagggccctggctgccggagtctctaaccctaaacgccgccacccaccggatcccctccacctcgcccttaagtatccctcagaccctcaccatcacccgcgatcctccctacccaatgctgcctcgaagtcacggccaccggaccggcggcggcggcttctccctcaagtcctcgcccttctcgtcagtgggcgaggagagggttccggacccgaagccgcggcggaacccgcggccggagcagatccggatcctggaggccatcttcaactccggcatggtcaacccgccgcgcgacgagatcccgcgcatccgcatgcagctgcaggagtacggccaggtcggcgacgccaacgtcttctactggttccagaaccgcaagtcccgctccaagaacaagctgcgctccggcgggacaggccgcgcggggctcgggctcggcggcaaccgggcctcagagccgccggcggcggcgacggcgcaccgggaggccgtggcaccgtcgttcacgccgccaccgatcctcccgccccagccggtgcagccgcagcagcagcttgtctcgccggtggcggcgcccacctcgttgtcgtcatcgtcctccgaccgctcgtccgggtccagcaagcccgcgagggctacgttgacgcaggcgatgtccgtgacggcggccatggacctgctctcgccgctccgccgatcagctcggccacggcaagagcagcgccatgtctaggccggaggaggcgcacgacgtcgatgccacgaagctcggtctgctacagcatggctttggcatcatcacgctggccgtgcacgtggacgttgcctcctccgctgctggcgttctgcctcctattccgtcctcgccgtcgccgccggacgccgccgtcaccgttgcgagcgtggctatcaccgctagcctgactgattttgctgcaagtgctatatctactgggcactggcgccgtcgctaacaatcagttgcaaggtactctttttgttctttgatatgaacaatttaattaactgatcaaatcgtgaatcaccaccatttagctagattattagtatcacatgcatgcatcatattcatacgctcatgtttaaatggattaattagaagtgttatttggggggagtcaataacttctcttgtagtgttgccctccatttcagtttcgtttggatttaactacaaaatgacaatgaccgtactgtcgccacgctgtcaagtcgtcgctcccccgatttctcggcgcctgctcgcatcaactccacgcaggccaggtttcagggtgctagctactcactttttcagtgtatcgtctcagttttatgtttgatatgaggcttttttctgttgtgttttccatatgttttttatgtttggtggaacaattggtgaataatacagcaccttatctgaaaatgctgatagcacgatatggtgttaaactcaccgattcaatttttttgagcccttcagtgttttgattaaaatgcgtatcaaacagtaaattcttatgagcatctaactgaaccatgtcatggtacctgtctaacatgctcaatagcactaaaactacacaaaagggaagtaatggcttcactatcaagttttttcatcactttgattgcttaaccattttcctcggtgaccactgttgattggtgctattaacatttttctgctaatgacacaaggatgacagcgttgcattttttcttgtttagggtgtgtttagttcgtgaaaagaaattttttgggtgtcacatcggatgtttgacgggatattggaaggggtttctggatacgaatgaaaaaaactaatttcggatacgaataaaaaaactaatttcggatacattgtccatagagaggtcacatcccctcctatgtttctttttatgatggagggagtgtctgatattaatgcatgtcaagtatttctcattgtatcacaaccggtgataaagttatacacttattatttaatcaatattttttaaatggatagagtgatttatcagtactcactatcttgtctaatgtatctggggtatttattcaattttaatttcataccgatgaaaattggattagctacatgcaatccagattactcccttttacaaatgagattgttaatatatttttgccctgttcagatgaataaccttgattcatagagggtatctccgttggggtggccacgagtactactgcgtctcagccaactagattggtgaggattgaaggccttttgttgtataataggccagatgattaacaacaggaaccaacaagattgtaatctaccctatattgttagcctactcatttttccagatgcaagatgctataatgcctctgggcttcattttgttctgcttttatgcctccaatttttttgtcagtggactgattttgtttcctggtgataatgcaatctgtcaaaagcaacaggccttgtataatctttttattataaatgactgatgatggggcaccatgtatgatttgtcgccatgttcttcctcttcgtccacggccgcaagctctccgaccaggtcacctgatccccttatt
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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