LOCUS       XM_015788201            1267 bp    mRNA    linear   PLN 07-AUG-2018
DEFINITION  PREDICTED: Oryza sativa Japonica Group homeobox-leucine zipper
            protein HOX18 (LOC107276211), mRNA.
ACCESSION   XM_015788201
VERSION     XM_015788201.2
DBLINK      BioProject: PRJNA122
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_029261.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Aug 7, 2018 this sequence version replaced XM_015788201.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Oryza sativa Japonica Group
                                           Annotation Release 102
            Annotation Version          :: 102
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.1
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1267
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /chromosome="6"
     gene            1..1267
                     /gene="LOC107276211"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 14 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:107276211"
     CDS             331..1119
                     /gene="LOC107276211"
                     /codon_start=1
                     /product="homeobox-leucine zipper protein HOX18"
                     /protein_id="XP_015643687.1"
                     /db_xref="GeneID:107276211"
                     /translation="

MYSSSSMEGEDLGSWLGLGIGGGGYAYGGDDCRRSPSSPSPVQMLFSQHVKEEITRGYDHGRDEEQASGSKIMKGERGARLRVMRSIRNSGGDGSRSRVLSLGDDGGDGGSGGGGGGGTRKKLQLTKEQSTLLEDSFRVHNILSHAQKHELARQLKLKPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCESLTEENKQLKHELMELRRLASPAAAAAGSQLYVQFPRAAAAAMVNVCPSCEKVTVMGGGGGETGKSSSSYSS"

     misc_feature    order(688..699,703..705,754..756,772..774,811..813,
                     817..822,829..834,838..846,850..855)
                     /gene="LOC107276211"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(691..693,700..702,820..822,829..834,841..843)
                     /gene="LOC107276211"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    703..852
                     /gene="LOC107276211"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    856..>957
                     /gene="LOC107276211"
                     /note="Homeobox associated leucine zipper; Region: HALZ;
                     cl23880"
                     /db_xref="CDD:451592"
ORIGIN      

aagcaaacgcctgctagcttaattgatccccataattaaccgcatgcggtataattttcttcttcaatttacacaagaaaccgaccttgttgatcgagttgttgttgtcacctataaagctagcataaacacactactcctcttcttgaccccttcttctcttctccatagctatcaaacacaccttgtaagcttctagcttcttcttcttcttctacatacacttcatcttctccatagcaaacaccttaaacttatagctgcttcttcttcttcttcttcttcttcttcttctacatagaatagaagcttctacataagatatagtccatgtatagctctagtagcatggaaggagaggatctaggttcatggcttggtctcgggatcggcggcggcggttacgcatacggcggcgacgattgccggaggtcaccgtcgtctccgtcgccggtgcagatgttgttctcccagcatgtcaaggaagagatcacgaggggatatgatcatggccgtgatgaagaacaagcttcagggagcaagatcatgaagggagagagaggtgcaaggctaagggtgatgaggtccatcaggaacagcggcggcgacggtagccgctcgcgtgtactgagcctcggcgacgacggcggcgatggcggcagcggcggcggcggcggtggcggcacgaggaagaagctccagctcaccaaggagcagtcgaccttgctcgaggacagcttccgcgtccacaacattctttctcatgctcagaagcacgagctcgctcgtcagctgaaactgaagccgagacaggtcgaagtgtggttccaaaatagaagagccaggacgaagctgaagcagactgaggtggactgcgagttcttgaagcgatgctgcgagagcctgaccgaggagaacaagcagctcaagcatgagctcatggagctgcgtcggctggcttcgccggcggcggcggcggccggctcgcagctctacgtccagttcccgagggcggcggcggcggcgatggtgaacgtctgcccgtcctgcgagaaggtcaccgtgatgggcggcggcggcggcgagacgggaaagagctcctccagctatagctcttaataatataaattaatttaactattagtttgtactcggagtttgaacaaacacctgatgaatatggaggtgtgatgatcgatcgacttcgtgtagatgatcaactagctaggtgtgccaatatatatataactcttagtaattgatttga

//