2024-04-27 09:30:59, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_015786059 1153 bp mRNA linear PLN 07-AUG-2018 DEFINITION PREDICTED: Oryza sativa Japonica Group 39S ribosomal protein L46, mitochondrial (LOC4340823), mRNA. ACCESSION XM_015786059 VERSION XM_015786059.2 DBLINK BioProject: PRJNA122 KEYWORDS RefSeq. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_029261.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Aug 7, 2018 this sequence version replaced XM_015786059.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Oryza sativa Japonica Group Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1153 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /cultivar="Nipponbare" /db_xref="taxon:39947" /chromosome="6" gene 1..1153 /gene="LOC4340823" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 17 ESTs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 89 samples with support for all annotated introns" /db_xref="GeneID:4340823" CDS 80..826 /gene="LOC4340823" /codon_start=1 /product="39S ribosomal protein L46, mitochondrial" /protein_id="XP_015641545.1" /db_xref="GeneID:4340823" /translation="
MLLRSPARSSPHLRSLLRARGFISSASPSAATAAEGDDGKIVASVLFERLPVVIPKIHPVVYAFQEFSFRWRQQYRRKYPDDVLGKADARGKGDYQIDYVPAPRITDADKTNDRKSLQRALDNRLYLLLYGKAYGAPDDKPVWHFPEKVYDNEDTLRLCAESALKSVLGGLNNTYFVGNAPMAHMVVDQKEDSSISSFKRFFFKSQVVGATKYDIGKCQDHVWVTKDELLEYFPEHKAFFNKMIIHIR"
misc_feature 413..787 /gene="LOC4340823" /note="Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+...; Region: Nudix_Hydrolase; cl00447" /db_xref="CDD:444909" misc_feature order(521..529,542..568) /gene="LOC4340823" /note="nudix motif; other site" /db_xref="CDD:239217" ORIGIN
tccttcccccacactgacacacgcaccacccccccttgcggcggcgcctcccctcccctccccctctcactccggcaccatgctgctgcgatcgccggcgaggtcgagcccccacctccgctcgctcctgcgggcgcgaggcttcatctcctccgcctcgccctcggccgccaccgcggcggaaggggacgacgggaagatcgtggcgtccgtgctgttcgagcgcctccccgtcgtcatccccaagatccaccccgtcgtctacgccttccaagaattctcgtttcggtggaggcagcagtacagacggaagtaccccgacgacgtgctgggaaaggccgacgcgaggggcaagggagattatcagatagattatgtgcctgctccaagaatcacagacgctgacaaaacaaacgacaggaagtcactacaacgagctcttgataatagactctatctccttctgtatggcaaggcttatggggctcctgatgacaagcctgtttggcattttccagaaaaagtttatgacaatgaagacactttgcgattgtgtgctgaatcagcattaaaatctgttcttggtggactcaacaatacgtattttgttggcaacgcgccaatggctcatatggtagttgaccagaaggaagattcaagcatttcatcattcaagcgattcttctttaagtcacaagtggtcggtgccacgaaatatgatatcggaaaatgccaggaccacgtgtgggtgaccaaagatgagttactggagtattttccggagcacaaggctttcttcaacaagatgatcattcacataagatagcccttttatctgattggggcaagctgggacactctgaagtttgaacaatgagcattgtgttgcttgacctgtgtacaagtttcctgccaccacttatcatcctgaacacaattggcaaggaaaattactcatcaagtgttcctccaaagacacccacatagatgtattgcccatttttgtcaatcatatggcaatcctgtagccttgtaggcttttttcccagctgctgtatttttaacatgatgtactaccgttctattattcttggtgaaataattaacatggcattttggcccctccttcctttgttggggtttctagttttaa
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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