2024-04-18 23:50:55, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_015785518 2306 bp mRNA linear PLN 07-AUG-2018 DEFINITION PREDICTED: Oryza sativa Japonica Group homeobox protein BEL1 homolog (LOC4339876), mRNA. ACCESSION XM_015785518 VERSION XM_015785518.2 DBLINK BioProject: PRJNA122 KEYWORDS RefSeq. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_029261.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Aug 7, 2018 this sequence version replaced XM_015785518.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Oryza sativa Japonica Group Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2306 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /cultivar="Nipponbare" /db_xref="taxon:39947" /chromosome="6" gene 1..2306 /gene="LOC4339876" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 12 ESTs, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 43 samples with support for all annotated introns" /db_xref="GeneID:4339876" CDS 521..2113 /gene="LOC4339876" /codon_start=1 /product="homeobox protein BEL1 homolog" /protein_id="XP_015641004.1" /db_xref="GeneID:4339876" /translation="
MMAAHHHHHEHHHLLDMSSPPNASGAIISSFDHAAGLLSLHDVAAAADHHHHHLRGGGGGLQLPSPWSQQQVSLSLYNNAAGAAGSPPSSLVAHQQLAAAQPLMFQLRGSKYLGPVKALLAEFCSLDVEAMDGAKQQRPPNPNPKIGKWDDVEGSGSWGNLSLSSMDLLDLERRKARILSMVEEVDRRYRRYREQMRAVEVSFEAVAGGGAAQVYTKLAMRAMSRHFRCLRDALVGQVRALRNAMGESQRDAAGGVAAAAPGATKGDTPRLRVLDQCLRQQRAFQQSGAVDSFPWRPQRGLPERAVAVLRAWLFEHFLHPYPNDVDKHILARQTGLSRSQVSNWFINARVRLWKPMIEDMYKEETKPESSDGNNKLNPSAAGNKQQHRDDPKKNYTATTAEASLVQQSSYHLHLRSSGNRNSSSLMIPAAASTSIDHHHDSSHQLLGGHSYSSAAGLHHGHGGAVSLTLGLQQQQQPFAASMMHQHQQHQHQHQQQQSFMVEAAEEEEDDVLPYRNLMESQLLHDFAGAS"
misc_feature 821..1228 /gene="LOC4339876" /note="domain associated with HOX domains; Region: POX; smart00574" /db_xref="CDD:214728" misc_feature order(1403..1417,1421..1423,1481..1483,1499..1501, 1538..1540,1544..1549,1556..1561,1565..1573,1577..1582) /gene="LOC4339876" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(1409..1411,1418..1420,1547..1549,1556..1561, 1568..1570) /gene="LOC4339876" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 1457..1573 /gene="LOC4339876" /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920" /db_xref="CDD:428673" ORIGIN
cagagacaaaaaaaaagttactacaccaagaattgaattaattatgtatatatattgccaatctatatatattaattaattaattcctagccacccatgcacccaacatgtataggtatatccagtactatctagctagcttaatatttcttgttgttgcatgtgtctaactagctagctagcttgcacttgcacatgcatataattaattagttgcatgaaatcttgacatctgcaggttgtagctatatcagttagcaacaattaagcaggtgttgtagctgacttttctgagtgacaatcaaactagctagcacacatttcatcactttcacatatatactatactagactagagctatatacagtagtagtaccatggtttaattatttgtagccttatagagagagagaagagaagaagagagagagatcagtgtgaggcaccgacgaagacgaagacgaagacgacgacgacgacaagcacacaacaaatttgcacacacgcgcgcgagcatcgatgatggcggcccatcatcatcatcatgagcaccaccacctcttggacatgtcgtcgcccccaaacgccagcggcgccatcatctcctccttcgaccacgccgccggcctcctctccctccacgacgtcgccgccgccgccgaccaccaccaccaccacctacgaggaggaggagggggtttgcaattgccatcgccgtggtcgcagcagcaggtttccctctccctctacaacaacgctgccggcgcagcaggctcgccgccgtcgtcgttggttgcccatcagcagctggcggcggcgcagccattaatgttccagctgagggggtccaagtacctgggccctgtgaaggcgctgctcgccgagttctgcagcctcgacgttgaggccatggatggcgccaagcagcagagacctcccaatcccaatcccaagattggaaagtgggacgacgtggagggttcaggttcgtggggcaacctgtctctgagctccatggacctcctggatctcgagaggaggaaggccaggatcttgtccatggttgaagaggtggacagacgttaccggcgataccgtgagcagatgagggcggtggaggtgtcgttcgaggcggtggccggcggcggcgcggcgcaggtgtacacgaagctggcgatgcgagccatgtcgcggcacttccggtgcctgagggacgcgctggtggggcaggtgcgcgcgctgaggaacgccatgggggagagccagagggacgccgccggcggcgtggcggcggcggcgcccggtgccaccaagggcgacacgcctcggctgcgggtgctggaccagtgcctgaggcagcagagggcgttccagcagtccggcgccgtcgacagcttcccgtggcgcccgcagcgcggtctgccggagcgcgccgtcgccgtcctccgcgcctggctcttcgagcacttcctccacccgtatccaaatgatgtggacaagcacattttggcgcgccaaacaggcttgtcaagaagccaggtttcgaattggttcatcaatgcaagggtgaggctatggaagcctatgatagaagacatgtacaaggaagaaacgaagccggaatcatctgatggcaacaacaaattaaaccctagcgcagccggcaacaaacagcagcatcgagatgatcccaagaagaattacacggcaacgacagcagaagccagcttagtacaacaaagcagctaccatctccaccttcgcagcagcggaaaccgtaactcctcctcgttgatgatccctgcagcagcatcaacatccatcgatcatcaccatgacagcagccaccagctgttgggcggccatagctattcttcagcagcaggattgcatcatggtcatggcggcgccgtgtcgcttactctagggctccagcagcagcagcagccatttgcggcgtcgatgatgcatcagcatcagcagcaccagcaccagcaccagcagcagcagtcattcatggtggaggcggcggaggaagaagaagatgacgtgctcccttacaggaacctcatggagtctcagttgctgcatgattttgcaggagctagctaaggcaggctccagcttagcatgcagctaatttatttgattgttaaaggagattattgcgctcaaaagtttaatttaattaaggagatgtaggtaattaaatattacattattgttcttttatgaccaaacatttcgttacattatttggggatttcttttgtaaaaatcagcccaccacttctgttctggccta
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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